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TCONS_00000257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000257
Unique NameTCONS_00000257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000257 ID=TCONS_00000257|Name=TCONS_00000257|organism=Clytia hemisphaerica|type=transcript|length=3980bp
caGAAAATAGAAAACTGATGTTTATATAAAATGGTTGTGATGGCGGTGAA
CAATCGGTATTGTAGTGACTGTTTAGAATCAGGGGAATTTCTACCCCTGA
GACTTGTCATGATGAATTTGGATAGCGGTCTTTGGATGTGTCCCAAAGAT
GATtgtACATTTCCCTTATCTTCTCCATCCATGCAGTTATACATGGAAGA
AGATTTGACCACTGAACGTGTTTTGCTGTTGACAGGAAACAAAAGTAAAC
AATTAGAGagaCCACCAACTCCAGACTCACTAGTAGCAAGTATTTCATCA
AACAAACAAAGTGACATGTTACAACAAACACAATATGCAGTAAGTACTAC
TTCATCAAGTGGAAGTCGAAAACGTAAACATTCAGATGGTGGCTCATCAA
GCAGATCAACCAAAACAAATAGTTTTCGCAGTGTCAGCAATTCAAACATT
ACAGATCCAATATCGTCAGATTCTTCGAGCTTGATGGCTAACAAAAAGTA
TCCTTCAGTACCTCTATGGGAAAATGAAGAACTGCTGTGCTGGCTGGATT
CAATGCTTGCACTCATAGTCTTGAACCAAACTTTACAGAATTATCCTGAA
GAGTCCAAAGGTACCCTAAATAAATTACTCAGCGAATACAAACATAATAC
TGATATTTACAATGTGACAAAAGACTATGAAACAATAAGAGCAAGCATGC
ACACTTTACGGAAATCGACACTCAACTTCATTCAACCAAAGATGTTATCC
AGCTTCACCGAGGAGGATTCTCCTCTCTTGTCTCTACAGCTTTTAATGAA
AACCAATGCTGAGCTTTATGAAGATTGCGAAGTGGAATACTCGAGTAAAT
TCACTTGTAACCAATGTCAATTCGAAAAAACTGATGGGTTCAAGAAAACC
ATACTGACTCTCCCAGAAGGATATCCAGATTTGAATTTCGTAGAGAATTT
ATACTACAAAAGGAATTGTTACAAATGCAATGCACCAGAGCAAAAGAACG
TTTTCTATATTGAGAAataTCCAGCTGCGTTGTTTGTGTACTGCAGTACA
GGGGTAGGTTGTCGAAAATACTGGAATTGGTTCAACTTCACATCGCCGGC
TGGAGACAATTATATTGTGACGCAAATTGTCCAATACTCTAGAAAGAAGC
ACCACTTCATTTTGTGGAGTTACTCTTACAAAGATAAATTATGGATAGAA
GCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACATGAACGACCCAA
ATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGAAAGTTTCAACAC
TTGAGGAAGcgataaagaaaaatgaacagAAAAATCTTAGCTCCGAGCAA
ACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCTGGAATCACCGCT
TTGCTCTGGAAATAGTAGTGTTATTGTACAATACTCTGGGCAATCGAGTC
GCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCGAACGGAAGATTA
TCGAATGATAGCGACCGCCCAATTGAAGGGCGTAAGGACAGTGGCGAACT
TCCAAATGATCAACTTCGAAAGAAATCCTTGTTGCACGTACCTTATTACA
AGCCGTTTACAGCACGTTCAAAGCAANCAGTACCAAGTAAGTGAGTAAGT
AAGTTGTCTGTGTGTTTGATAAAGGGTACAATATGAAAGGGGTAAGGGTT
ATTAGGGGAGAATTTTTGTGTAGGGGGGTTCAGCATGGGGCGCTTGTTAT
GCATAACTGAGGGGTTTCTTTACCAGTGCAGCCCTAGGAGAGAATAATAG
GACTGCTCTACTATTATTGTGTTACTTTAATTATCTGGATTTTCACGTTC
GATAGAATTCATCTGTTGTTTTGGTTTCCCTTCTTTTCTACTTTCTCATT
TATACTGCCAGGGAATAATATTTGCTCTTATTGTTGTTCTTTAGATAAAT
TATGGATAGAAGCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACAT
GAACGACCCACATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGAA
AGTTTCAACACTTGAGGAAGcgataaagaaaaatgaacagAAAAATCTTA
GCTCCGAGCAAACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCTG
GAATCACCGCTTTGCTCTGGTAATAGTAGTGTTATTGTACAATACTCTGG
GCAATCGAGTCGCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCGA
ACGGAAGATTATTGAATGATAGCGACCGCCCAAGCGAAGGGCGTAAGGAT
AATCGCGATCTTCCAGATGATCAACTTCGAAAGAAATCCTTGTTGCACGT
ACCTTATTACAAGCCGTTTACAGCACGTTCAAAGCGTACAGCTAGAGAAA
GTCCTACAAATTACAACCAGAATGCAACATCTTCTCATCTTAAATCTGAA
AGCAGTAGCATGTCGCACAGTACACCAGCAAAACAGACTGTTCTAAACAA
CCCTGACATTTTACAACAAACCACTAAAACATCAGACATAAAGGCGGATC
CTACGAACGCGATTTTCAGTCAAGCTTTAGCTAACGAACTCGGTGATTTT
TATTCGGATCTTTTAGACCAACAATCTATGGACACTACCCAAGAAGATGG
CATGTTTGATTCGACACAAATTTCCCAGGGAACTATTCCTAACCAAATGT
CGTCTGATCAATTCAGCTCTACCACCCAAAACCAACAGCAAGACTCTACA
ATCGACGTTCAACAAACTCTAGAACGTCGATTTAGTAACGATGTTGATTC
GTTGAGTGATATAGTTGATATAGGTACTGCAATCGCCGGAGGTTCTTTTT
CAAGTACCGTATCTAACGATAAAACTGGATTTAAAGATTATGGAAACCCT
TTGAAAAGACTTATGGAGGAAGAGGAAGATATCAAAGGAGTTTTCCAAGC
TTCTTCTGTCAATTTACAGATGTTTAATAAGACTGAAACGAATGATACCT
CTTCAAGTGGGTCGCATGTAACACCAATGGATATAAATACTGATTTTGGT
GAAATTAAGTCACCAACCGAGGACGAACCCAAGGTCGATTTTGCAATCAC
CATGTCGACGAACAGTTATTCTGGAGCGTATTCGGACGTCAAACTGTCTG
ACGAGGAATTAGAAGAAATTTTAAACGGGTGATGAGTTAAGAATTGAATC
GAATATCTACCGGTAACACAGTTATGTGTGTATGTCACGTGTATAATAAA
TCGCATAAACTGGTCGCTCTTTGTTTGAACGGGAACTGGAAGAGATTAAT
TCTGATTTCGACTCAGAAATTTACTGTAGAGAGTCTCAAAACAGAATGAG
AATCAATATGACATAAATAGTAGAGGTAAAGGTATAGCGttctacagtat
gtggcccccaaaacgtcaatcaaatttgaaatgtctctcaaatctagagg
aaaaaaggttttacaaaaatttttgctgcatgaaaagctttaacatctct
actttatttcctggaagttctttttcaaaattttcaatttcaacaatatt
tttaaatcgcttaaagatagcttttttctaatggccccaaaaacggaggt
ttgcaattttagcgacttctcgagatatctttaagatatgaatacaaaat
tttgaccatagttttgaaatgtgatttagagggttttgggcataaatttg
tttgataaaatttttacagtatacccctggttgtcaaaacggtggtttgg
ggcccccaaaacgtaggtgtagttaaaattaaattattaagcctagtggt
aatagggggaactatgaacatatttgtgttttcccttaaatttacgaccc
gatggatgtaaaatttatgatttttataaagtatttcaagattttcgatg
atgcaaagtccaaactgaaaatttagaaattttcaaaatgacaattttga
tttacaacgtcttaatcaagtttctgaaaa
Run BLAST on NCBI

transcript from alignment at sc0000001:2445250..2452430-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000257 ID=TCONS_00000257|Name=TCONS_00000257|organism=Clytia hemisphaerica|type=transcript|length=7181bp|location=Sequence derived from alignment at sc0000001:2445250..2452430- (Clytia hemisphaerica)
CAGAAAATAGAAAACTGATGTTTATATAAAATGGTTGTGATGGCGGTGAA CAATCGGTATTGTAGTGACTGTTTAGAATCAGGGGAATTTCTACCCCTGA GACTTGTCATGATGAATTTGGATAGCGGTCTTTGGATGTGTCCCAAAGAT GATGTAAGATTATATTAATTTTTCTCAATTCGGTATTGTAGTGACTGTTT AGAATCAGGGGAATTTTTACCCCTGAGACTTGTTATGATGAATTTGGATA GCAGTCTTTGGATGTGTCAGAAAGAGAATGTAAGATTATCTTAATTTTTC TCGATTCCTTAATTTAGGTGTTATGTCTATACCCTTTTCAGTTTGCATGA TGCACCAATAAAATAATTGATATAATCCTAGTATGTTGGTATACCTGCCA TTATTTTTGAGAGTGTGAATAATTTGTGAATTTTTTTTTTCATTTCAGTG TACATTTCCCTTATCTTCTCCATCCATGCAGTTATACATGGAAGAAGATT TGACCACTGAACGTGTTTTGCTGTTGACAGGAAACAAAAGTAAACAATTA GAGGTTAGTAGAATTTGATTGAAACAAAAGTCATTCAAAAACCAAAAAAA ACAAAGATAAAAGTAAAAAATTTGTAGTGTCATTATGTCGTATCAGACAT CACAACAATTCAAACACAGCTAAAATAGAACAAAAACGGAACAAAAACAA AGACTCAAAAAATCTGCCTTTCATTTAAGATTCTTTAAGAAATTAGTTTT AGTTTTTTGAGCGATGACTCTTTTGATCGTTTTGGTGTCCCAGACCTTAC ATTATCTTTTTTTATTTTCCAGAGACCACCAACTCCAGACTCACTAGTAG CAAGTATTTCATCAAACAAACAAAGTGACATGTTACAACAAACACAATAT GCAGTAAGTACTACTTCATCAAGTGGAAGTCGAAAACGTAAACATTCAGA TGGTGGCTCATCAAGCAGATCAACCAAAACAAATAGTTTTCGCAGTGTCA GCAATTCAAACATTACAGATCCAATATCGTCAGATTCTTCGAGCTTGATG GCTAACAAAAAGTATCCTTCAGTACCTCTATGGGAAAATGAAGAACTGCT GTGCTGGCTGGATTCAATGCTTGCACTCATAGTCTTGAACCAAACTTTAC AGAATTATCCTGAAGAGTCCAAAGGTACCCTAAATAAATTACTCAGCGAA TACAAACATAATACTGATATTTACAATGTGACAAAAGACTATGAAACAAT AAGAGCAAGCATGCACACTTTACGGAAATCGACACTCAACTTCATTCAAC CAAAGATGTTATCCAGCTTCACCGAGGAGGATTCTCCTCTCTTGTCTCTA CAGCTTTTAATGAAAACCAATGCTGAGCTTTATGAAGATTGCGAAGTGGA ATACTCGAGTAAATTCACTTGTAACCAATGTCAATTCGAAAAAACTGATG GGTAAGAAATCATCCCTACGTCTTCTTATTTTTGCTAAAATCTTTTATTT GAGCACTGGTCGATTGTATAGGTTTAATCTGGGTATTGTGGTTTAAACAT AATTCGATGAATATTCAGTTTTGATGGTTATTATTTCTTTTTGATTTTTT ACTAGGTTCAAGAAAACCATACTGACTCTCCCAGAAGGATATCCAGATTT GAATTTCGTAGAGAATTTATACTACAAAAGGAATTGTTACAAATGCAATG CACCAGAGCAAAAGAACGTTTTCTATATTGAGAAGTAAGTACTTACTTTT CATCAAAGTTATTCACAAATCAAACCTCTAATAATAGCTAACGCGTATAC TCATGTGACAGACCAGGGCAGACAGTGAAATGTACAGGGTTCGAATTAAC GTATCGCGTTTCGCAATTCGTGATGCGTTTTTGTACGAAGCAAAAATTTA AAAACTCACCAAAATCGCAATACAACCTATATAAAAATTTTTACAGCTCA CTAAGTCAGTTTTATTAAATGAGCGTCCAAGCAAATAGAACTGTTATTTG GCTTATAAATTAGTTTGGAGAGTGGAAAATGCATTGTATATTTATAAAAA CGCATCGTGAACTATCTAAAATATTTCGCCCCTGCAGCGCACAGATTTAA CTTACTTTGTTCACTAAAAGGTGCCATTCACTTTTAAATCGTCAAATTCA ATCCCTGAATGTATATTTAGGACAAAATTACACCTTTCAATTTACCAGGA AAATCGAGCGTCCAAGATAACAAATTTTTTTTTTACATAATATTTGGTCA CTTCTCCATAAAATTATTCTCTTGCCAAAAATATTGTAATGTCAGTTGTT AACTTTTGGTTACTTACTCTGACTTTTTTCCCTGATTTGATGCTTTATCA TGACGTGCTAATAATCTCTAATCAAACCTCATTTAACCTTCTCTAAGGAA GGACATGGATAATGCAAAGTAATTCATTCATGTAATTCCTTTTCAAATTT TAGATATCCAGCTGCGTTGTTTGTGTACTGCAGTACAGGGGTAGGTTGTC GAAAATACTGGAATTGGTTCAACTTCACATCGCCGGCTGGAGACAATTAT ATTGTGACGCAAATTGTCCAATACTCTAGAAAGAAGCACCACTTCATTTT GTGGAGTTACTCTTACAAAGGTAGGTGTTTAAACTGTGTTTTAATTCAAT ATTCCCAGCATTCAAGATTACTGACAGTAATATTCAAGGCAAAATTGAGT AAAATTGCTTTGGTGCTTGGTGCATCTTCACCAATGCTCTTTAATATTCT GTCCGAAACCTTGAACTTGCTTGTTTTGTCCTGGTACTACCATTGCTTTT GAAAAAAACTTTCTTGTAGAAGTCAAGCTAAGCATAAGTGTGCAAAACCT GACTTCTTGAGAAAGGGGACTTCCAGTCTTTTAAAAATAGGATGCAAGCT GCTATTAAACCAGTTAGCTGTTTTTTTGCATCCTATGAAAACACAAAGAC AACATTCTACTGTCAAAACTAGAACAGTACTTTTTAAATGTGCTGATTCG AAGAAAACCCAGAGCTGAAAAAATTGTTTTCTTCTTGAAACAAATCTTCA CAGAAAAAAGTACTGTAAATATTTTTGAGAATAATTAACCTTCGGTTCCG AAATTTTCTGAGACTTTGTTTTCTGTATATATAGACTAGAGAAAATTTTC AAATTTCAAAAAATAGTTATCCCAACAGATTCAAAAACTTTAAAATAAAA AAGATTAGTATTGTGAAATCGATAACTTTAGTAAAATGTTGTAAAGGCGC GCGATATTGGGAAAAGTTTTCACCTTCTAAACGATTTGTTTATCGTTTCA AAAAACGGTTAGTATACTTAATTTTTACAAAATCGATTTTGCTTCGATCT TTTATCGAATATTTCTCGATTTTTCCTCGATTTTTCATTCGATACTTTTT ATTGAAATATAGTCAAGCCTTGAATATTTGGGATTTTGTTTTCACTTCGT TCTCTCAAGATGAACAGGTTAGCCATTCCATTCCATTATTGGCGAAGTTG AAATACAACATTCAAATTTTCTATATTTGGCTATATTTAGCTGTAAAGTT CAACTTGTACACTCTTTTAATCCTGACTCTTCCCTTTATCTTATAGGTTG ATGTTATAAACAAAGTTAACATAAAATATCTAGAAAGTTTTATGATAAAT ACTTTCTCCCCTTTTAAGACCCCATTACTTAACATGGGTTCTTAAAAGTG AAAGTGTTTTCAGGCTAAAGTCGTAAGTATAAAGGCCATGAATCTTTCCG GCGTGATATTTTTCTAGCTTTTCAGCTTTTAGACGATGATTCTTTTGCAG TATAACTTTTCATCGAATCTCCTTCATTTCGCCGTTTTTTGTTTCATTCT TCAATCAATGTTTCTACTTTATGCGTTCTCTCTTCTTACATCGCGAAAAG TCCTTTTCCAACTACCCATATCCTTTTCAAAACTACTATATATTTGATCG CTGAGTGATTTCACTGAAGATTGCCATCCTAGATGGCATCAAACTTTGAG TATGAAATTAACTTATAAATCGTTTTTTTTTACTCAAACTAGTATATTTG AGCACTGTGTTATTTAGACAGTACCAAGTAAGTGAGTAAGTAAGTTGTCT GTGTGTTTGATAAAGGGTACAATATGAAAGGGGTAAGGGTTATTAGGGGA GAATTTTTGTGTAGGGGGGTTCAGCATGGGGCGCTTGTTATGCATAACTG AGGGGTTTCTTACCAGTGCAGCCCTAGGGGAGAATAATAGGACTGCTCTA CTATTATTGTGTTACTTTAATTATCTGGATTTTCACGTTCGATAGAATTC ATCTGTTGTTTTGGTTTCCCTTCTTTTCTACTTTCTCATTTATACTGCCA GGGAATAATATTTGCTCTTATTGTTGTTCTTTAGATAAATTATGGATAGA AGCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACATGAACGACCCA AATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGAAAGTTTCAACA CTTGAGGAAGCGATAAAGAAAAATGAACAGAAAAATCTTAGCTCCGAGCA AACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCTGGAATCACCGC TTTGCTCTGGAAATAGTAGTGTTATTGTACAATACTCTGGGCAATCGAGT CGCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCGAACGGAAGATT ATCGAATGATAGCGACCGCCCAATTGAAGGGCGTAAGGACAGTGGCGAAC TTCCAAATGATCAACTTCGAAAGAAATCCTTGTTGCACGTACCTTATTAC AAGCCGTTTACAGCACGTTCAAAGCAANCAGTACCAAGTAAGTGAGTAAG TAAGTTGTCTGTGTGTTTGATAAAGGGTACAATATGAAAGGGGTAAGGGT TATTAGGGGAGAATTTTTGTGTAGGGGGGTTCAGCATGGGGCGCTTGTTA TGCATAACTGAGGGGTTTCTTTACCAGTGCAGCCCTAGGAGAGAATAATA GGACTGCTCTACTATTATTGTGTTACTTTAATTATCTGGATTTTCACGTT CGATAGAATTCATCTGTTGTTTTGGTTTCCCTTCTTTTCTACTTTCTCAT TTATACTGCCAGGGAATAATATTTGCTCTTATTGTTGTTCTTTAGATAAA TTATGGATAGAAGCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACA TGAACGACCCACATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGA AAGTTTCAACACTTGAGGAAGCGATAAAGAAAAATGAACAGAAAAATCTT AGCTCCGAGCAAACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCT GGAATCACCGCTTTGCTCTGGTAATAGTAGTGTTATTGTACAATACTCTG GGCAATCGAGTCGCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCG AACGGAAGATTATTGAATGATAGCGACCGCCCAAGCGAAGGGCGTAAGGA TAATCGCGATCTTCCAGATGATCAACTTCGAAAGAAATCCTTGTTGCACG TACCTTATTACAAGCCGTTTACAGCACGTTCAAAGCGTACAGCTAGAGAA AGTCCTACAAATTACAACCAGAATGCAACATCTTCTCATCTTAAATCTGA AAGCAGTAGCATGTCGCACAGTACACCAGCAAAACAGACTGTTCTAAACA ACCCTGACATTTTACAACAAACCACTAAAACATCAGACATAAAGGCGGAT CCTACGAACGCGATTTTCAGTCAAGCTTTAGCTAACGAACTCGGTGATTT TTATTCGGATCTTTTAGACCAACAATCTATGGACACTACCCAAGAAGATG GCATGTTTGATTCGACACAAATTTCCCAGGGAACTATTCCTAACCAAATG TCGTCTGATCAATTCAGCTCTACCACCCAAAACCAACAGCAAGACTCTAC AATCGACGTTCAACAAACTCTAGAACGTCGATTTAGTAACGATGTTGATT CGTTGAGTGATATAGTTGATATAGGTACTGCAATCGCCGGAGGTTCTTTT TCAAGTACCGTATCTAACGATAAAACTGGATTTAAAGATTATGGAAACCC TTTGAAAAGACTTATGGAGGAAGAGGAAGATATCAAAGGAGTTTTCCAAG CTTCTTCTGTCAATTTACAGATGTTTAATAAGACTGAAACGAATGATACC TCTTCAAGTGGGTCGCATGTAACACCAATGGATATAAATACTGATTTTGG TGAAATTAAGTCACCAACCGAGGACGAACCCAAGGTCGATTTTGCAATCA CCATGTCGACGAACAGTTATTCTGGAGCGTATTCGGACGTCAAACTGTCT GACGAGGAATTAGAAGAAATTTTAAACGGGTGATGAGTTAAGAATTGAAT CGAATATCTACCGGTAACACAGTTATGTGTGTATGTCACGTGTATAATAA ATCGCATAAACTGGTCGCTCTTTGTTTGAACGGGAACTGGAAGAGATTAA TTCTGATTTCGACTCAGAAATTTACTGTAGAGAGTCTCAAAACAGAATGA GAATCAATATGACATAAATAGTAGAGGTAAAGGTATAGCGTTCTACAGTA TGTGGCCCCCAAAACGTCAATCAAATTTGAAATGTCTCTCAAATCTAGAG GAAAAAAGGTTTTACAAAAATTTTTGCTGCATGAAAAGCTTTAACATCTC TACTTTATTTCCTGGAAGTTCTTTTTCAAAATTTTCAATTTCAACAATAT TTTTAAATCGCTTAAAGATAGCTTTTTTCTAATGGCCCCAAAAACGGAGG TTTGCAATTTTAGCGACTTCTCGAGATATCTTTAAGATATGAATACAAAA TTTTGACCATAGTTTTGAAATGTGATTTAGAGGGTTTTGGGCATAAATTT GTTTGATAAAATTTTTACAGTATACCCCTGGTTGTCAAAACGGTGGTTTG GGGCCCCCAAAACGTAGGTGTAGTTAAAATTAAATTATTAAGCCTAGTGG TAATAGGGGGAACTATGAACATATTTGTGTTTTCCCTTAAATTTACGACC CGATGGATGTAAAATTTATGATTTTTATAAAGTATTTCAAGATTTTCGAT GATGCAAAGTCCAAACTGAAAATTTAGAAATTTTCAAAATGACAATTTTG ATTTACAACGTCTTAATCAAGTTTCTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000139XLOC_000139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000257-exon-sc0000001-1575043694:2452278..2452430TCONS_00000257-exon-sc0000001-1575043694:2452278..2452430Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1575043694:2451878..2451982TCONS_00000257-exon-sc0000001-1575043694:2451878..2451982Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1575043694:2450980..2451608TCONS_00000257-exon-sc0000001-1575043694:2450980..2451608Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1575043694:2450697..2450825TCONS_00000257-exon-sc0000001-1575043694:2450697..2450825Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1575043694:2449811..2449977TCONS_00000257-exon-sc0000001-1575043694:2449811..2449977Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1575043694:2445250..2448046TCONS_00000257-exon-sc0000001-1575043694:2445250..2448046Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1510915933:2452278..2452430TCONS_00000257-exon-sc0000001-1510915933:2452278..2452430Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1510915933:2451878..2451982TCONS_00000257-exon-sc0000001-1510915933:2451878..2451982Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1510915933:2450980..2451608TCONS_00000257-exon-sc0000001-1510915933:2450980..2451608Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1510915933:2450697..2450825TCONS_00000257-exon-sc0000001-1510915933:2450697..2450825Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1510915933:2449811..2449977TCONS_00000257-exon-sc0000001-1510915933:2449811..2449977Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1510915933:2445250..2448046TCONS_00000257-exon-sc0000001-1510915933:2445250..2448046Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1491911889:2452278..2452430TCONS_00000257-exon-sc0000001-1491911889:2452278..2452430Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1491911889:2451878..2451982TCONS_00000257-exon-sc0000001-1491911889:2451878..2451982Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1491911889:2450980..2451608TCONS_00000257-exon-sc0000001-1491911889:2450980..2451608Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1491911889:2450697..2450825TCONS_00000257-exon-sc0000001-1491911889:2450697..2450825Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1491911889:2449811..2449977TCONS_00000257-exon-sc0000001-1491911889:2449811..2449977Clytia hemisphaericaexon
TCONS_00000257-exon-sc0000001-1491911889:2445250..2448046TCONS_00000257-exon-sc0000001-1491911889:2445250..2448046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2445250..2452430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88182 1.17923 0.364532 0.361704 14.2718 10.9447 7.47192 9.57404 6.42081 8.17733 8.78269 5.25694 8.44606 9.13289 4.15853 5.32187 9.73897 10.0107 5.40498 3.8355 2.5315 3.72899 2.27825 3.2239 7.71334 5.73775 2.23989 1.40176 2.82701 3.35887
Blast
BLAST of TCONS_00000257 vs. Swiss-Prot (Human)
Match: USPL1 (SUMO-specific isopeptidase USPL1 OS=Homo sapiens GN=USPL1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.508e-18
Identity = 74/306 (24.18%), Postives = 143/306 (46.73%), Query Frame = 1
Query:  517 WENEELLCWLDSMLALIVLNQTLQNYP----EESKGTLNKLLSEYKH-NTDIYN--------------VTKDYETIRASMHTLRKSTLNFIQPKMLSSFTEEDSPLLSLQLLMKTNAELYEDCEVEYSSKFTCNQCQFEKTDGFKKTILTLPEGYPDLNFVENLYYKRNCYKCNAPEQKNVFYIEKYPAALFVYCSTGVGCRKYWNW-FNFTSPAGDNYIVTQIVQYSRKKHHFILWSYSYKDKLWIEADDLKHPVVQYQHERPKCRSHEVHFMVLEK----VSTLEEAI----KKNEQKNLSSEQ 1350
            W+N   LCWLD +L+ +V ++ L+N       + +    +LL++Y   NT +Y                ++ +  I   ++ +R      +QP++  +  + +SP+ +  LL+K    + +     +S  F C+QC  +  +   K+++T     P+ + +   ++   C  CN+  Q     +EK      ++   G+      ++ F+F    G  Y +T ++QY R  +HFI W     D  W+E DDLK P  + +H++ +  + E+H ++ E+    V+  E A     K N+Q  LS+E+
Sbjct:  229 WKNAYALCWLDCILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEIFAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGP-CNNCNSKSQIRKMVLEKVSPIFMLHFVEGLPQNDLQHYAFHF---EGCLYQITSVIQY-RANNHFITWILD-ADGSWLECDDLKGPCSE-RHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEK 527          
The following BLAST results are available for this feature:
BLAST of TCONS_00000257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USPL17.508e-1824.18SUMO-specific isopeptidase USPL1 OS=Homo sapiens G... [more]
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