TCONS_00000209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000209
Unique NameTCONS_00000209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000209 ID=TCONS_00000209|Name=TCONS_00000209|organism=Clytia hemisphaerica|type=transcript|length=790bp
ACATCCTTGTTTGTTGGCCAGTCTGTTAAAGTCAAGAACAATTCTACTGC
TTCTAGTTCTCAAAAGAAGTCTTCCCCTGAAGAGAATATTTTGTTACGAA
ATCGAATCAATGGAAAAGCTGTTAATGCTAAACCTCGAGTAAAGTCGATT
CAAAACGTTCAGCTTCAAATAAAGAATAGCGTTGACAACGTACGTCAAAT
TTCTGTGACAAAGATTCTTTCACCAAAGAATACCACTGTAACCACCTTAA
AAACTCAAACAAGCCTTGATGTACCATCGAATCAATCACGTAAAAACATT
CACAAACATCAATCCAATCTCAGTCAAGACCAATGTTTATTTGAGAAATA
CAAAGCTATTGCCACTGGCAAATACAATGCAAACAATAATATACATCTAG
ATATGCTGGATTCACCGCAGAAGCTTAATCATCCAAGTTTCCAATACCAA
TCAAAATCGACAAACAACCTCCACCTAATGCCCACGATGTCATCAACGAA
TTTGAATCGAGGTTCTGCTTGGAATCTTTATTCTTCTAGATACAATGTAT
ATTTAGATGATAGTTTCCAGTCATTGGAGCAATATCGATCAACTTCCAGT
TTTCAGTCTAAAGATACCTTGAACGGCATTCATCAGAGCTACCAAGTAAC
GTCCGGAGAATCATTTCGACCCCACCGCACCAGCAGAAAGGACTCGGTGA
cgaaaagaattacaaaattcTTGACAAAGGGATTGGGGAGGCATTATACG
TACCATAAATGGCGATTTCTATCACTCAAAGAAAGTCAGG
Run BLAST on NCBI

protein sequence of TCONS_00000209-protein

>TCONS_00000209-protein ID=TCONS_00000209-protein|Name=TCONS_00000209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
TSLFVGQSVKVKNNSTASSSQKKSSPEENILLRNRINGKAVNAKPRVKSI
QNVQLQIKNSVDNVRQISVTKILSPKNTTVTTLKTQTSLDVPSNQSRKNI
HKHQSNLSQDQCLFEKYKAIATGKYNANNNIHLDMLDSPQKLNHPSFQYQ
SKSTNNLHLMPTMSSTNLNRGSAWNLYSSRYNVYLDDSFQSLEQYRSTSS
FQSKDTLNGIHQSYQVTSGESFRPHRTSRKDSVTKRITKFLTKGLGRHYT
YHKWRFLSLKESQ
Run BLAST on NCBI

transcript from alignment at sc0000001:1245968..1249651-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000209 ID=TCONS_00000209|Name=TCONS_00000209|organism=Clytia hemisphaerica|type=transcript|length=3684bp|location=Sequence derived from alignment at sc0000001:1245968..1249651- (Clytia hemisphaerica)
ACATCCTTGTTTGTTGGCCAGTCTGTTAAAGTCAAGAACAATTCTACTGC
TTCTAGTTCTCAAAAGAAGTCTTCCCCTGAAGAGAATATTTTGTTACGAA
ATCGAATCAATGGAAAAGCTGTTAATGCTAAACCTCGAGTAAAGTCGATT
CAAAACGTTCAGCTTCAAATAAAGAATAGCGTTGACAACGTACGTCAAAT
TTCTGTGACAAAGATTCTTTCACCAAAGAATACCACTGTAACCACCTTAA
AAACTCAAACAAGCCTTGATGTACCATCGAATCAATCACGTAAAAACATT
CACAAACATCAATCCAATCTCAGTCAAGACCAATGTTTATTTGAGAAATA
CAAAGCTATTGCCACTGGCAAATACAATGCAAACAATAATATACATCTAG
ATATGCTGGATTCACCGCAGAAGCTTAATCATCCAAGTTTCCAATACCAA
TCAAAATCGACAAACAACCTCCACCTAATGCCCACGATGTCATCAACGAA
TTTGAATCGAGGTTCTGCTTGGAATCTTTATTCTTCTAGATACAATGTAT
ATTTAGATGATAGTTTCCAGTCATTGGAGCAATATCGATCAACTTCCAGT
TTTCAGTCTAAAGGTATTATTTCACTTTTGGAAATTTTCCACTATACTCT
CCCTGGACTCCCTTTCTTGAGGGCAATATTTCTAACTTTGAACGTTATTC
AACGTGTAATGGGGGTATCAGTTTGTTGGTGTGTCAGTATTGATCTTTTT
TTGCGTCGGTATTTCGGTGATCAAAATAACTTATGTCGGTATTTTCAGCT
TGAAACATCGGAAAAGTGGTGCTAAACCAAAGGCTATTTCTCAAAATTTC
CTCTTATCCTCTTATTGGTCCATCGCAGAATGGACCTTTAAAAAGCAACT
GATCGAAAAGATTTTGTCTTTATCGGGGCCTGTGCGCGCAATAAATTAAA
AAGTCCAGGCTAAACCAACCGCCGATCTAGAATTTTTGCCCGCCTACCTG
CGCGATGTTTGACCTATGTTTTGGATTGAATTGGTAGTAGAGTCAAATTT
CCCGGTTAGATTAAAGGGTTGTTTCAGGTAGGGTCAGGTAGGGTTAGGGC
TAGGGTTGGGGTTGGGAGTTAACCCCTGGTTAGGGTTTTAGCCCCGGGTA
CAATCCTGGACAAAAGGTTGTAGACTTTTCAAAAATTGAGAAAAATCTCT
CAAAATGCCCTACTTTCCCCTCTCCCCCCTCTGCAATGTTGTAGTACTGG
TGCTGGCATCGCTACACGGCAATATCAAAACTCATTCTCTATCAACATTG
TGGGGAGAGGAAATTTCTAAAAATCTACAAACCTTTTGTCCATGATTGTA
GAGTTTGGAGTAAATACTATGTTTATAAGCAACTTTGAACGGTTTGAGTG
GTTAAGGCGCTGGCGTTTCAGTCATAGGTGCTTTGTATTTTGTGGGTTCG
AATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAATGCATCAAAAAC
TTTCAAAACTTAGCAATAAAAAGAAAGTGTCAAAGAATAGAAGCTCAGAG
TGGAGGATGGGAAGGAAATTATTTTGCGTCACTTAAGGAACCCGGTACGA
ACNGGAGGATGGGAAGGAAATTTTTTTGCGTCACTTAAGGAACCCGGTAC
GAACGACATTCGGTTATTGCCACGTCAGCTGGACCTTCACGCCGCTCCGG
CTTCTTGTCTCATATTAGAATTTTGTCCCCGACTTTGAATGCTATGCACA
GTTTCTTTTGACGGGCTGTTTTTCTTTATTTACGTTTTTCATGAAAGATG
CTTTGTGCTTTCTTCAGTCGTGGTCAATAGTTTTTCTCCCCAGGCTCTCA
TATAACAATTCTTTCTCAGCACCTTCAGTTGCAACATACCATAAGCTCAT
GATGACGTTGATGGGTTCCAAATAAACGGCCCCACCCGCTTGTTAATTTT
TCGAAAATTTTCCACCCCCCTTCCCCGGACATTATTAGGACCCCATCGTT
TATTGATTTTTAAGAATATTTTCAGCGGTTAAAGAGAAGGCCCCTTATTT
TGCTCTAAATAGCCTGATTTTAGGCTATATAGTTACCTTATTTTTGGGTG
CTCGGAAAAACAATTTCCAACCCCCCCGGCAATTAGGTCCCTTTTTTATT
CAAAATCAATGCGAACTTAGCGAGAACAAAAAAACCATAGTAATCACCCA
GGATCTTGGATGAAGCCGTACCAATCAATGTAATCTCAAAACATCACATA
TATTTCTATATAAGTAGTAATTCATTAAAGTAACTTCAAGAGCATTGTTA
ACTCACAAGAAATACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAAAATA
GTAACCTCTGAAGACAAATAATAGAATTTTATCGCGCATGTGTCAATCTA
ATCACTGTAGAAAAAATCAAAGATGAAGAGCAAATATTACCATATTAATG
TCTAGCAGACTGTATCAGTATGCAGTTTACTATTTACGAATTCCCCAGAA
ATCTCCAAGTTTAGTTGAAATGAGTTTATTTCGAAAGAAATCTTTTACAT
GATCCCCAAATGTATAACAGTAATTACTAAACTTTTAATTATGGAAATGT
CACTTTAATTGAATCGAAATAATAGACAGACTTTATGTTATGATTCTCTA
TCACTGACTCTTTTTACAAAGCATCGATGACTTTTTGTAAGTTGTGTTTT
CAACGACGGGAATAAAAATATCGACTATGACGCTCATCCAAGATCTTGGA
TGGTCGTCATGGTACTTTTGTCTTCGCTGATTGCGCGATGAATAGAATCT
CGATTCGTCGGCACAGCGTAAATATATGATTTTGAGCTGTGCTTTTCACG
GTACACAAGAAAGCCTAAGCAGCTTAGCGTATTTTTTTGCCGTCAGCGGC
CGCAGCCCAACTTCAGCGGTCTAAATCCAAAATAGCGATCGAAATTCATT
TCAGCGGTAAAAACCGATGTTATAAATTGAAGGGGATTTTTAGCGGTCGA
GACTAAACTCAGGTGAATAAATAAACTTCACAGATGAATGATTCTTTACG
CAGCGGAGTAAAGGCCCAGCAGTGTTGGTAGTGTTAAATGGGCAGACTAT
TACTGTTACACGCTGGGAAGATTTCTTTTAAATTCACTTATTATAATGAG
TCTCAGAAGAGTTTTAAATAACTGGAAATAAAAAAATATGTAATCTGCTT
GAGCTTAACATGGTGATATGTGTTTTCCATATTCGAATCTTTTTCGGATA
TCAATGTTATTGAGACTTGCGCGATTGAATTCTTACATTCCGTCTCCACA
GCTTAATTTTCAAAAAAAAAGTTAACCTTTGGAGCTCACGCTACTCTGTT
TCGGTAACATTCTTAAGTTAGAATAATGATACGTTGCGGTTCAGTTAACC
AGAAACAGACTTTGATTTAAAGTTCAGATGTCTACAACGACTATTCTACC
TCTACTATTTTTCCCGAGGCATTATAATTGATACAGATTTTTTTGTTAAT
AACGTAGATACCTTGAACGGCATTCATCAGAGCTACCAAGTAACGTCCGG
AGAATCATTTCGACCCCACCGCACCAGCAGAAAGGACTCGGTGACGAAAA
GAATTACAAAATTCTTGACAAAGGGATTGGGGAGGCATTATACGTACCAT
AAATGGCGATTTCTATCACTCAAAGAAAGTCAGG

Coding sequence (CDS) from alignment at sc0000001:1245968..1249651-

>TCONS_00000209 ID=TCONS_00000209|Name=TCONS_00000209|organism=Clytia hemisphaerica|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0000001:1245968..1249651- (Clytia hemisphaerica)
ATACCTTGAACGGCATTCATCAGAGCTACCAAGTAACGTCCGGAGAATCA
TTTCGACCCCACCGCACCAGCAGAAAGGACTCGGTGACGAAAAGAATTAC
AAAATTCTTGACAAAGGGATTGGGGAGGCATTATACGTACCATAAATGGC
GATTTCTATCACTCAAAGAAAGTCAGACATCCTTGTTTGTTGGCCAGTCT
GTTAAAGTCAAGAACAATTCTACTGCTTCTAGTTCTCAAAAGAAGTCTTC
CCCTGAAGAGAATATTTTGTTACGAAATCGAATCAATGGAAAAGCTGTTA
ATGCTAAACCTCGAGTAAAGTCGATTCAAAACGTTCAGCTTCAAATAAAG
AATAGCGTTGACAACGTACGTCAAATTTCTGTGACAAAGATTCTTTCACC
AAAGAATACCACTGTAACCACCTTAAAAACTCAAACAAGCCTTGATGTAC
CATCGAATCAATCACGTAAAAACATTCACAAACATCAATCCAATCTCAGT
CAAGACCAATGTTTATTTGAGAAATACAAAGCTATTGCCACTGGCAAATA
CAATGCAAACAATAATATACATCTAGATATGCTGGATTCACCGCAGAAGC
TTAATCATCCAAGTTTCCAATACCAATCAAAATCGACAAACAACCTCCAC
CTAATGCCCACGATGTCATCAACGAATTTGAATCGAGGTTCTGCTTGGAA
TCTTTATTCTTCTAGATACAATGTATATTTAGATGATAGTTTCCAGTCAT
TGGAGCAATATCGATCAACTTCCAGTTTTCAGTCTAAAGATACCTTGAAC
GGCATTCATCAGAGCTACCAAGTAACGTCCGGAGAATCATTTCGACCCCA
CCGCACCAGCAGAAAGGACTCGGTGACGAAAAGAATTACAAAATTCTTGA
CAAAGGGATTGGGGAGGCATTATACGTACCATAAATGGCGATTTCTATCA
CTCAAAGAAAGTCAGACATCCTTGTTTGTTGGCCAGTCTGTTAAAGTCAA
GAACAATTCTACTGCTTCTAGTTCTCAAAAGAAGTCTTCCCCTGAAGAGA
ATATTTTGTTACGAAATCGAATCAATGGAAAAGCTGTTAATGCTAAACCT
CGAGTAAAGTCGATTCAAAACGTTCAGCTTCAAATAAAGAATAGCGTTGA
CAACGTACGTCAAATTTCTGTGACAAAGATTCTTTCACCAAAGAATACCA
CTGTAACCACCTTAAAAACTCAAACAAGCCTTGATGTACCATCGAATCAA
TCACGTAAAAACATTCACAAACATCAATCCAATCTCAGTCAAGACCAATG
TTTATTTGAGAAATACAAAGCTATTGCCACTGGCAAATACAATGCAAACA
ATAATATACATCTAGATATGCTGGATTCACCGCAGAAGCTTAATCATCCA
AGTTTCCAATACCAATCAAAATCGACAAACAACCTCCACCTAATGCCCAC
GATGTCATCAACGAATTTGAATCGAGGTTCTGCTTGGAATCTTTATTCTT
CTAGATACAATGTATATTTAGATGATAGTTTCCAGTCATTGGAGCAATAT
CGATCAACTTCCAGTTTTCAGTCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000113XLOC_000113Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000209-proteinTCONS_00000209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000209-exon-sc0000001-1575043694:1249039..1249651TCONS_00000209-exon-sc0000001-1575043694:1249039..1249651Clytia hemisphaericaexon
TCONS_00000209-exon-sc0000001-1575043694:1245968..1246144TCONS_00000209-exon-sc0000001-1575043694:1245968..1246144Clytia hemisphaericaexon
TCONS_00000209-exon-sc0000001-1510915933:1249039..1249651TCONS_00000209-exon-sc0000001-1510915933:1249039..1249651Clytia hemisphaericaexon
TCONS_00000209-exon-sc0000001-1510915933:1245968..1246144TCONS_00000209-exon-sc0000001-1510915933:1245968..1246144Clytia hemisphaericaexon
TCONS_00000209-exon-sc0000001-1491911889:1249039..1249651TCONS_00000209-exon-sc0000001-1491911889:1249039..1249651Clytia hemisphaericaexon
TCONS_00000209-exon-sc0000001-1491911889:1245968..1246144TCONS_00000209-exon-sc0000001-1491911889:1245968..1246144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1245968..1249651 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.127475	0	0	0.0406112	0.126526	0.138695	0	0.0458399	0.140953	0	0.135851	0.0590394	0	6.0212	4.64665	2.688	2.0479	0.0837298	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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