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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000209 ID=TCONS_00000209|Name=TCONS_00000209|organism=Clytia hemisphaerica|type=transcript|length=790bp ACATCCTTGTTTGTTGGCCAGTCTGTTAAAGTCAAGAACAATTCTACTGC TTCTAGTTCTCAAAAGAAGTCTTCCCCTGAAGAGAATATTTTGTTACGAA ATCGAATCAATGGAAAAGCTGTTAATGCTAAACCTCGAGTAAAGTCGATT CAAAACGTTCAGCTTCAAATAAAGAATAGCGTTGACAACGTACGTCAAAT TTCTGTGACAAAGATTCTTTCACCAAAGAATACCACTGTAACCACCTTAA AAACTCAAACAAGCCTTGATGTACCATCGAATCAATCACGTAAAAACATT CACAAACATCAATCCAATCTCAGTCAAGACCAATGTTTATTTGAGAAATA CAAAGCTATTGCCACTGGCAAATACAATGCAAACAATAATATACATCTAG ATATGCTGGATTCACCGCAGAAGCTTAATCATCCAAGTTTCCAATACCAA TCAAAATCGACAAACAACCTCCACCTAATGCCCACGATGTCATCAACGAA TTTGAATCGAGGTTCTGCTTGGAATCTTTATTCTTCTAGATACAATGTAT ATTTAGATGATAGTTTCCAGTCATTGGAGCAATATCGATCAACTTCCAGT TTTCAGTCTAAAGATACCTTGAACGGCATTCATCAGAGCTACCAAGTAAC GTCCGGAGAATCATTTCGACCCCACCGCACCAGCAGAAAGGACTCGGTGA cgaaaagaattacaaaattcTTGACAAAGGGATTGGGGAGGCATTATACG TACCATAAATGGCGATTTCTATCACTCAAAGAAAGTCAGG Run BLAST on NCBI protein sequence of TCONS_00000209-protein >TCONS_00000209-protein ID=TCONS_00000209-protein|Name=TCONS_00000209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
TSLFVGQSVKVKNNSTASSSQKKSSPEENILLRNRINGKAVNAKPRVKSI QNVQLQIKNSVDNVRQISVTKILSPKNTTVTTLKTQTSLDVPSNQSRKNI HKHQSNLSQDQCLFEKYKAIATGKYNANNNIHLDMLDSPQKLNHPSFQYQ SKSTNNLHLMPTMSSTNLNRGSAWNLYSSRYNVYLDDSFQSLEQYRSTSS FQSKDTLNGIHQSYQVTSGESFRPHRTSRKDSVTKRITKFLTKGLGRHYT YHKWRFLSLKESQ Run BLAST on NCBI transcript from alignment at sc0000001:1245968..1249651- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000209 ID=TCONS_00000209|Name=TCONS_00000209|organism=Clytia hemisphaerica|type=transcript|length=3684bp|location=Sequence derived from alignment at sc0000001:1245968..1249651- (Clytia hemisphaerica) ACATCCTTGTTTGTTGGCCAGTCTGTTAAAGTCAAGAACAATTCTACTGC
TTCTAGTTCTCAAAAGAAGTCTTCCCCTGAAGAGAATATTTTGTTACGAA
ATCGAATCAATGGAAAAGCTGTTAATGCTAAACCTCGAGTAAAGTCGATT
CAAAACGTTCAGCTTCAAATAAAGAATAGCGTTGACAACGTACGTCAAAT
TTCTGTGACAAAGATTCTTTCACCAAAGAATACCACTGTAACCACCTTAA
AAACTCAAACAAGCCTTGATGTACCATCGAATCAATCACGTAAAAACATT
CACAAACATCAATCCAATCTCAGTCAAGACCAATGTTTATTTGAGAAATA
CAAAGCTATTGCCACTGGCAAATACAATGCAAACAATAATATACATCTAG
ATATGCTGGATTCACCGCAGAAGCTTAATCATCCAAGTTTCCAATACCAA
TCAAAATCGACAAACAACCTCCACCTAATGCCCACGATGTCATCAACGAA
TTTGAATCGAGGTTCTGCTTGGAATCTTTATTCTTCTAGATACAATGTAT
ATTTAGATGATAGTTTCCAGTCATTGGAGCAATATCGATCAACTTCCAGT
TTTCAGTCTAAAGGTATTATTTCACTTTTGGAAATTTTCCACTATACTCT
CCCTGGACTCCCTTTCTTGAGGGCAATATTTCTAACTTTGAACGTTATTC
AACGTGTAATGGGGGTATCAGTTTGTTGGTGTGTCAGTATTGATCTTTTT
TTGCGTCGGTATTTCGGTGATCAAAATAACTTATGTCGGTATTTTCAGCT
TGAAACATCGGAAAAGTGGTGCTAAACCAAAGGCTATTTCTCAAAATTTC
CTCTTATCCTCTTATTGGTCCATCGCAGAATGGACCTTTAAAAAGCAACT
GATCGAAAAGATTTTGTCTTTATCGGGGCCTGTGCGCGCAATAAATTAAA
AAGTCCAGGCTAAACCAACCGCCGATCTAGAATTTTTGCCCGCCTACCTG
CGCGATGTTTGACCTATGTTTTGGATTGAATTGGTAGTAGAGTCAAATTT
CCCGGTTAGATTAAAGGGTTGTTTCAGGTAGGGTCAGGTAGGGTTAGGGC
TAGGGTTGGGGTTGGGAGTTAACCCCTGGTTAGGGTTTTAGCCCCGGGTA
CAATCCTGGACAAAAGGTTGTAGACTTTTCAAAAATTGAGAAAAATCTCT
CAAAATGCCCTACTTTCCCCTCTCCCCCCTCTGCAATGTTGTAGTACTGG
TGCTGGCATCGCTACACGGCAATATCAAAACTCATTCTCTATCAACATTG
TGGGGAGAGGAAATTTCTAAAAATCTACAAACCTTTTGTCCATGATTGTA
GAGTTTGGAGTAAATACTATGTTTATAAGCAACTTTGAACGGTTTGAGTG
GTTAAGGCGCTGGCGTTTCAGTCATAGGTGCTTTGTATTTTGTGGGTTCG
AATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAATGCATCAAAAAC
TTTCAAAACTTAGCAATAAAAAGAAAGTGTCAAAGAATAGAAGCTCAGAG
TGGAGGATGGGAAGGAAATTATTTTGCGTCACTTAAGGAACCCGGTACGA
ACNGGAGGATGGGAAGGAAATTTTTTTGCGTCACTTAAGGAACCCGGTAC
GAACGACATTCGGTTATTGCCACGTCAGCTGGACCTTCACGCCGCTCCGG
CTTCTTGTCTCATATTAGAATTTTGTCCCCGACTTTGAATGCTATGCACA
GTTTCTTTTGACGGGCTGTTTTTCTTTATTTACGTTTTTCATGAAAGATG
CTTTGTGCTTTCTTCAGTCGTGGTCAATAGTTTTTCTCCCCAGGCTCTCA
TATAACAATTCTTTCTCAGCACCTTCAGTTGCAACATACCATAAGCTCAT
GATGACGTTGATGGGTTCCAAATAAACGGCCCCACCCGCTTGTTAATTTT
TCGAAAATTTTCCACCCCCCTTCCCCGGACATTATTAGGACCCCATCGTT
TATTGATTTTTAAGAATATTTTCAGCGGTTAAAGAGAAGGCCCCTTATTT
TGCTCTAAATAGCCTGATTTTAGGCTATATAGTTACCTTATTTTTGGGTG
CTCGGAAAAACAATTTCCAACCCCCCCGGCAATTAGGTCCCTTTTTTATT
CAAAATCAATGCGAACTTAGCGAGAACAAAAAAACCATAGTAATCACCCA
GGATCTTGGATGAAGCCGTACCAATCAATGTAATCTCAAAACATCACATA
TATTTCTATATAAGTAGTAATTCATTAAAGTAACTTCAAGAGCATTGTTA
ACTCACAAGAAATACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAAAATA
GTAACCTCTGAAGACAAATAATAGAATTTTATCGCGCATGTGTCAATCTA
ATCACTGTAGAAAAAATCAAAGATGAAGAGCAAATATTACCATATTAATG
TCTAGCAGACTGTATCAGTATGCAGTTTACTATTTACGAATTCCCCAGAA
ATCTCCAAGTTTAGTTGAAATGAGTTTATTTCGAAAGAAATCTTTTACAT
GATCCCCAAATGTATAACAGTAATTACTAAACTTTTAATTATGGAAATGT
CACTTTAATTGAATCGAAATAATAGACAGACTTTATGTTATGATTCTCTA
TCACTGACTCTTTTTACAAAGCATCGATGACTTTTTGTAAGTTGTGTTTT
CAACGACGGGAATAAAAATATCGACTATGACGCTCATCCAAGATCTTGGA
TGGTCGTCATGGTACTTTTGTCTTCGCTGATTGCGCGATGAATAGAATCT
CGATTCGTCGGCACAGCGTAAATATATGATTTTGAGCTGTGCTTTTCACG
GTACACAAGAAAGCCTAAGCAGCTTAGCGTATTTTTTTGCCGTCAGCGGC
CGCAGCCCAACTTCAGCGGTCTAAATCCAAAATAGCGATCGAAATTCATT
TCAGCGGTAAAAACCGATGTTATAAATTGAAGGGGATTTTTAGCGGTCGA
GACTAAACTCAGGTGAATAAATAAACTTCACAGATGAATGATTCTTTACG
CAGCGGAGTAAAGGCCCAGCAGTGTTGGTAGTGTTAAATGGGCAGACTAT
TACTGTTACACGCTGGGAAGATTTCTTTTAAATTCACTTATTATAATGAG
TCTCAGAAGAGTTTTAAATAACTGGAAATAAAAAAATATGTAATCTGCTT
GAGCTTAACATGGTGATATGTGTTTTCCATATTCGAATCTTTTTCGGATA
TCAATGTTATTGAGACTTGCGCGATTGAATTCTTACATTCCGTCTCCACA
GCTTAATTTTCAAAAAAAAAGTTAACCTTTGGAGCTCACGCTACTCTGTT
TCGGTAACATTCTTAAGTTAGAATAATGATACGTTGCGGTTCAGTTAACC
AGAAACAGACTTTGATTTAAAGTTCAGATGTCTACAACGACTATTCTACC
TCTACTATTTTTCCCGAGGCATTATAATTGATACAGATTTTTTTGTTAAT
AACGTAGATACCTTGAACGGCATTCATCAGAGCTACCAAGTAACGTCCGG
AGAATCATTTCGACCCCACCGCACCAGCAGAAAGGACTCGGTGACGAAAA
GAATTACAAAATTCTTGACAAAGGGATTGGGGAGGCATTATACGTACCAT
AAATGGCGATTTCTATCACTCAAAGAAAGTCAGG Coding sequence (CDS) from alignment at sc0000001:1245968..1249651- >TCONS_00000209 ID=TCONS_00000209|Name=TCONS_00000209|organism=Clytia hemisphaerica|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0000001:1245968..1249651- (Clytia hemisphaerica) ATACCTTGAACGGCATTCATCAGAGCTACCAAGTAACGTCCGGAGAATCA TTTCGACCCCACCGCACCAGCAGAAAGGACTCGGTGACGAAAAGAATTAC AAAATTCTTGACAAAGGGATTGGGGAGGCATTATACGTACCATAAATGGC GATTTCTATCACTCAAAGAAAGTCAGACATCCTTGTTTGTTGGCCAGTCT GTTAAAGTCAAGAACAATTCTACTGCTTCTAGTTCTCAAAAGAAGTCTTC CCCTGAAGAGAATATTTTGTTACGAAATCGAATCAATGGAAAAGCTGTTA ATGCTAAACCTCGAGTAAAGTCGATTCAAAACGTTCAGCTTCAAATAAAG AATAGCGTTGACAACGTACGTCAAATTTCTGTGACAAAGATTCTTTCACC AAAGAATACCACTGTAACCACCTTAAAAACTCAAACAAGCCTTGATGTAC CATCGAATCAATCACGTAAAAACATTCACAAACATCAATCCAATCTCAGT CAAGACCAATGTTTATTTGAGAAATACAAAGCTATTGCCACTGGCAAATA CAATGCAAACAATAATATACATCTAGATATGCTGGATTCACCGCAGAAGC TTAATCATCCAAGTTTCCAATACCAATCAAAATCGACAAACAACCTCCAC CTAATGCCCACGATGTCATCAACGAATTTGAATCGAGGTTCTGCTTGGAA TCTTTATTCTTCTAGATACAATGTATATTTAGATGATAGTTTCCAGTCAT TGGAGCAATATCGATCAACTTCCAGTTTTCAGTCTAAAGATACCTTGAAC GGCATTCATCAGAGCTACCAAGTAACGTCCGGAGAATCATTTCGACCCCA CCGCACCAGCAGAAAGGACTCGGTGACGAAAAGAATTACAAAATTCTTGA CAAAGGGATTGGGGAGGCATTATACGTACCATAAATGGCGATTTCTATCA CTCAAAGAAAGTCAGACATCCTTGTTTGTTGGCCAGTCTGTTAAAGTCAA GAACAATTCTACTGCTTCTAGTTCTCAAAAGAAGTCTTCCCCTGAAGAGA ATATTTTGTTACGAAATCGAATCAATGGAAAAGCTGTTAATGCTAAACCT CGAGTAAAGTCGATTCAAAACGTTCAGCTTCAAATAAAGAATAGCGTTGA CAACGTACGTCAAATTTCTGTGACAAAGATTCTTTCACCAAAGAATACCA CTGTAACCACCTTAAAAACTCAAACAAGCCTTGATGTACCATCGAATCAA TCACGTAAAAACATTCACAAACATCAATCCAATCTCAGTCAAGACCAATG TTTATTTGAGAAATACAAAGCTATTGCCACTGGCAAATACAATGCAAACA ATAATATACATCTAGATATGCTGGATTCACCGCAGAAGCTTAATCATCCA AGTTTCCAATACCAATCAAAATCGACAAACAACCTCCACCTAATGCCCAC GATGTCATCAACGAATTTGAATCGAGGTTCTGCTTGGAATCTTTATTCTT CTAGATACAATGTATATTTAGATGATAGTTTCCAGTCATTGGAGCAATAT CGATCAACTTCCAGTTTTCAGTCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000209-exon-sc0000001-1575043694:1249039..1249651 | TCONS_00000209-exon-sc0000001-1575043694:1249039..1249651 | Clytia hemisphaerica | exon |
TCONS_00000209-exon-sc0000001-1575043694:1245968..1246144 | TCONS_00000209-exon-sc0000001-1575043694:1245968..1246144 | Clytia hemisphaerica | exon |
TCONS_00000209-exon-sc0000001-1510915933:1249039..1249651 | TCONS_00000209-exon-sc0000001-1510915933:1249039..1249651 | Clytia hemisphaerica | exon |
TCONS_00000209-exon-sc0000001-1510915933:1245968..1246144 | TCONS_00000209-exon-sc0000001-1510915933:1245968..1246144 | Clytia hemisphaerica | exon |
TCONS_00000209-exon-sc0000001-1491911889:1249039..1249651 | TCONS_00000209-exon-sc0000001-1491911889:1249039..1249651 | Clytia hemisphaerica | exon |
TCONS_00000209-exon-sc0000001-1491911889:1245968..1246144 | TCONS_00000209-exon-sc0000001-1491911889:1245968..1246144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000001 | supercontig | sc0000001:1245968..1249651 - |
Blast
The following BLAST results are available for this feature:
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