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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000184 ID=TCONS_00000184|Name=TCONS_00000184|organism=Clytia hemisphaerica|type=transcript|length=3066bp
TAAACATGAAAGGGACATGTGAGATATTGACACTAAAATAATTATCAACC
GTTTGATTGCAATTTAAAGATGTTATTTAAATTTGTTTATTATGCATTTA
CCATTGAATTTCAAGAATCGTTAAATCCATAGGGGAATATGAAATTTACA
GGGCGGAATATCGAAAGAAGCCTCAGTACAAAGTTTAGCTCGACCCAGTC
CCCGGCGAACACGATGTGTTGATTCAGCAAAACTGTGTCCATCTCTTTCC
ATTCAGTTGCAGTTCAGCTAACCTTGTGTTAAGTAGTTGTTTTTGGGTAT
CGTCGTGTCGACGCCTAAGCCTACTTTATTTAAATGTAttgttaaaaatt
tacaaaaaaaaattataaaattataaaaaaccataaaaaaatatatcata
taTACACGTGAAGGAAACCATCCTGAGTACACAGAGATTGCATTGCACGA
GATGAATCAACAAGGACAAGGTGCATCATCCGCAAACTACCCAATCGCTT
CCCTGTACGTTGGTGACTTGAGTCCAGATGTTACAGAAGCCATGCTTTTC
GAGAAGTTCAGTGCTACTGGTCCAGTGTTATCTATCCGAGTCTGTCGTGA
CTTGGTCACTAGACGGTCCCTTGGCTATGCTTATGTCAACTATCAACAAC
CTGCTGATgCTGAGCGAGCCATTGATACTTTGAACTATGACCCCATCAAA
GGACGTCCGTGCCGTATCATGTGGTCTCAACGTGACCCAACTCTACGAAG
ATCTGGTGTTGGAAACATTTTCATCAAGAACTTGGATAAGCATATCGATC
ACAAAGGTCTTTATGATACCTTCAGTGCTTTTGGAAACATTCTCTCATGT
AAAATTGCTGCTGACGACAAAGGTCAATCCAAGGGCTATGGTTTTGTTCA
TTATGAAACTAAAGAAGCTGCCCAAGAAGCTATCAGCAAAGTCAACGGCA
TGATGTTGAACGACAAGAAAGTCTTTGTGGGAGAATTCATGTGTAAGAAA
GAGCGTGTGGACCAGATTGGTGAccaacaaaagaaatttaagaacatctt
ttGCAAGAATTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGT
TTCAAGAATTTGGAGAAATCACCAGTTGTGTTGTTATGACTGATGAGTCT
GGAACAAGCAGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGC
TGAAAAGGCTTGTGATGAGTTGAACAATAAGGAGATTGATGGAAACAAAA
TCACTTGTTGCCGTGCTCAAAAAAAAGCTGAAAGATCCATGGAATTGAAA
AGCAAATTTGAACAACAAAAGAACGAGAGAATTAGCAGATATCAAGGTGT
TAACTTGTACATCAAGAATCTGGAAGATGGCATCGACGATGAACGTCTTC
GAACTGAATTCTCTCAATTTGGAACCATCACCAGCGCGAAAGTCATGAAA
GACGACAAAGTAAATTCCAAAGGATTTGGTTTCGTTTGTTTTTCGTCTCC
TGATGAAGCAACAAAAGCAGTCACAGAAATGAACGGACGCATCATTGTCA
CCAAACCCTTGTATGTTGCATTGGCTCAACGTAAGGAAGAACGTCGTGCA
CAATTGTCTACTCAGTTTATGCAGAGAGTTGGTCCTCTAAGATATCAACC
TGGAGCCGGAATGCCTCAGCAACAAGGTTATTCCTTCCAGCCAGGCCAAC
CAAGCTTCTATATCCCAACGATGCCACAAGGTCAACGTGCTGCCTTCATT
GCTCAACCAGTGAGCCAAATGACCAGACCTCGATGGCAATCAGCAAACGT
ACGTCAAATGCAAGGTGGATACCCCAACCCTGGAGGAAACGTTCGCGGAT
CACGACCAAGACACCCCAACTCGGTCCAACCCCGACGTGAAACACCTTAC
AATCAGAAATTTCAACAAGGAGGCAATATGCCAAACCAAGTGATGCGTGC
TGGTGGTCCAGTACCAAACCAAAGAGCTCAATACAAATTGAACCAAAATA
CACGCAATCAATACCCAGCTGGACCAGCACCTCCAGCTGTTGTCCCACAA
CAAGTTGCTGATCAACCAGCTCCAATGATGCCAGGAcaACAAGAGCCATT
GACTGCTTCCACTTTGGCTGGAGCCACTCCATCCGAGCAAAAGCAGATGA
TTGGTGAACGTCTTTTCCCCTTGGTCCAAGAACATCAACCCAAGATGGCC
GGCAAGATCACTGGAATGTTGTTGGAGATCGATAATGGTGAATTGTTGAA
CATGTTGGAAAGTCGTGATTTGTTGAAAGATAAAGTGGGAGAAGCTGTGG
CAGTACTTCAAGCTCATCAAGCTAAAGAGGCTCAAACCCAGGCTAAGACT
GGTGAACAAGCCTAATTCCCTTCACACCCTAGCGTTGAGCATGCTTTGAA
TGGactaaaagaaagttttaatgGAAGATTATTTCGGAAAGTTGTgtatg
ttttgatgttttttgaagctttgttgttttgaaaaatttctctgGAGAAC
GTTTTTCTGCTATTCCGGCGCTGAAGAaatttagtttaacttttattttt
tagtaAAGAAATactatatatggaaattttacAGTATATTGCATAACAGG
ATTGATTAGGACGGTATTTATCAGAggttttaaggatttttatcGTTAAT
GTGAAAGTTATATGAAAGGGTTAACAATGGTTTATGTGTTGATGGATCTT
AAAATTTCTCTGTGCCTCTTTTAAAATCTAGTTTGCAATCAATATGTTCT
TCTAATTTTCTATGtacactttattttttcattaaaatacataaaataaa
aacagacaaaaaacaaaaaggtcATGTCGACTGTAAACTTTGCATGTTTG
TATTTGGTATCGCTTGTGAACAgtactgaatcaatcttccattTATTGTA
ATNTGTTTGTATTTGGTATCGCTTGTGAACAgtactgaatcaatcttcca
ttTTTTgtaacattgtagtatggtaTTATGTCATGAAAGAAGAATATAGC
AGCATGCTTACACTTAACCAAACAATGcgttttctatatttttactTGCC
AACTTTATTTGCTATT Run BLAST on NCBI transcript from alignment at sc0000001:996620..1005215- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000184 ID=TCONS_00000184|Name=TCONS_00000184|organism=Clytia hemisphaerica|type=transcript|length=8596bp|location=Sequence derived from alignment at sc0000001:996620..1005215- (Clytia hemisphaerica)
TAAACATGAAAGGGACATGTGAGATATTGACACTAAAATAATTATCAACC
GTTTGATTGCAATTTAAAGATGTTATTTAAATTTGTTTATTATGCATTTA
CCATTGAATTTCAAGAATCGTTAAATCCATAGGGGAATATGAAATTTACA
GGGCGGAATATCGAAAGAAGCCTCAGTACAAAGTTTAGCTCGACCCAGTC
CCCGGCGAACACGATGTGTTGATTCAGCAAAACTGTGTCCATCTCTTTCC
ATTCAGTTGCAGTTCAGCTAACCTTGTGTTAAGTAGTTGTTTTTGGGTAT
CGTCGTGTCGACGCCTAAGCCTACTTTATTTAAATGTATTGTTAAAAATT
TACAAAAAAAAATTATAAAATTATAAAAAACCATAAAAAAATATATCATA
TATACACGTGAAGGAAACCATCCTGAGTACACAGAGATTGCATTGCACGA
GGTTTGTTTACAACGACTAGCAGTGTAACACATTTTACCAGGCGTGACAA
CAACATTCGCCTCTTTATTATTATTCAAGAAGAATTTATAATCAAACTCG
AAGTTTTATTTACTTGAGAACTTTACACATACAAGATGAATCAACAAGGA
CAAGGTGCATCATCCGCAAACTACCCAATCGCTTCCCTGTACGTTGGTGA
CTTGAGTCCAGATGTTACAGAAGCCATGCTTTTCGAGAAGTTCAGTGCTA
CTGGTCCAGTGTTATCTATCCGAGTCTGTCGTGACTTGGTCACTAGACGG
TCCCTTGGCTATGCTTATGTCAACTATCAACAACCTGCTGATGGTAATAT
TTATTTTTGTTGTTTAAAAAGACATCTTCCATGGTTTTGCATGAATTAGA
TGAAAATAATGCAGGAATTGATTAGCTATATGGTTAAAGAACGAAAAATG
ATGCATGCGTGTTACAATGCAGGATTCTTTAGAGGATGATATAAATTCTG
ATGCAAAAGATTTGTTATGAAATTGGAAGTAAAACAGATTTAGATTTCAT
AAAATGTTATGCTGTAGTCAGTTATACTTAATTTGAGGGTGCTGACTCAG
AATTGGGCTATTCCAAAAAAAAATTGTATAGGGGTATTGATAAACTTTTT
TTCACTAACCCCCCTGGAAATTTTGGATAACAAACTATCCCCTGGAAATT
AGGAGTCGACACCCCTGGAAAGTTAAATATTGTGAAAAAGTGCCTGGAAA
GTGGCTATTGATGCCAGTGTAGGAGGAGAGAACCCCCTGGAAACCTTTAA
TAACCCCCTTGGAAAATCTGAAAATGACCAAAAGCCCCTTGGAAAATCGA
GGCTCAGTCCCCCCTGGAAAAGTTCGTCAATACCCCTGTATGGTTTAAAA
ATAGAATAGCCCATTAGTGTTATCCAAGTTTAGGTTTAATTTTTTGTCTA
TCATGTGTTCTTTTCTTTTACATTGGGCTATTCAAAAATAAAATTGTACA
TGGGTATTAACAAACTTTTTACATTAACCCCTTGGAAATTGGGTCAACAC
CCCTGGAAATTAAAATTTTATGAAAAAGGGGCTGGAAAATGACTAGTAAT
GATGTCAGTTTAGGAAGAGAAAACCCCTTGTAGAATTAAGGCTCAAACAC
CCCTGTACCGTAAGTTGGTCTAATATCAACATCCCCCGTTTAATTCCGAC
ACGCTTCTTTACAGACAGGAATAATATGAAAGCTTGAATCACTGGTTTAA
AAAAGGATTATTCCTCTCTGACCACTAAGCAAAGAAAAACAGTTTAAACC
ATTCTATCAATTTCAGCTGATAAAAAGGGTGTCGGAATTAAGTTACGGTA
TGGTTTAAAAATGGAATAGCCCATTCCAGGCTAAAATTTAAGGCCTAAAA
AATTATGATTTTTGGTTTTTTTTGCCATTTGTAGATCAGAAGTTTTAGCC
TTTGTTTAAAAACAAAGGAAATGGGGAATTTCCCTAAATTCTGCTTCTAA
TATACGCATAATTAAAGACCTTTTTCACCACAAACATTAACAACTTTTGA
TCTTAATGTCAGAAATTTTCACTGGCAGTTCAAGTTCCTTTGCTTTTATT
AAAACATTGGATAAGGATAGTATTTGCTATTTTAAGCTCAAAAAAGAATT
TAGTGAATTGAAGTACTTTAAATATTGTTCATGCAGCCCTGTGAATCGAG
GTCGGCATTCGGCAATGCCGACTTGAAAGCCGACGTAACTTGAGCTGAAG
TCGGCTTTTATTTGCTGACGTAATTTACACTCTAGGTCGGCGCGCCAACA
AAAGAAATGTTTTGGTAATCTAATTGTGTTATCATTTGATAACACTTGTG
CATGATAATCAAGCCTCATTCCATTCTCTTTATAAAACATAAAACTTAAT
AACACAATTATAGAGCAGCTGAATTTGTTAGTTCGTTAATTTTCTTCCTA
TTTTGTCTTTGCCGACCTGAACAAGCTACTTAGGACGGCTTTGCCGACCT
AAAATGACCTCTAGGTCAGCAAAATTTTGCCGGCCTACGGCTCGTTTTGG
TCGGCATTTAAGTGCCGATATTATTTTGTCTGAATTCACAGGGCTGTTCA
TGGGAATTCAATTGCAAAAATATCTGACATTACACTTCACTTAGTAATTT
CTTGTAGTACATCTTTTGCTCATTTTCAAGAGCTTTGTCATATGGTTGCA
AAGTTCATTCTTGAGGCCATTGTACAGACTCATTTGGCTGTTTATCAATC
CAAGTCTCTTGATTTAGTTTTTTGTTTTATTTAAAAGTAATGAAGTATGC
TTTAAAGTCTGAAGTAATCTTGCAAATTTCTGATGTTTGGGCGAGACAGC
ATAGCACTTTTTTTATTTAGGTAAGAACTGCATAAAATTGTAAAAAAGCA
CAAAAGTTGCAATTTTTGGTCAATTTTAGACCAAAATGTGGCGAAAAGTG
GAACTTGCGCATGAAATATCTCGAGTTAGGTAATGAAATCGGCCATACCC
GTTTAAAAGTCTTCTGTATAGTTTTTTGAGAGCTTTCGAATGGTTTACCT
GATATTGTCTGAAAATGAGTTTGAAATTTTCAAAACATTTCGCCCTTAGG
GTTTTGCCTGGGGAAAAAAGAAATTGCCCAAAAAAGGGATGTTCCACCAG
TGGGATTTTAGGGGATTTTTTCCTGAGGCATAAGCATCCTATAGAGAAAG
TCTGGAGAAAGTTTCAGCTATATATTATTTTTTTCCTGTAAATTTATGCT
AAACGACCCCACTATTAGCTTGATCTGGAAATAGTATTTGTTTTAATAAA
AAACAAGAGATTATTTTGAAAATTAAAAACTTGACTTTGGAAGTAGCGAT
TTTCTAGTTCCAGATTCTGGATTGAAACCTAAAGAGTGTTCAGTTAATGA
AATTTTTAGAGTCATTGTACATGTCCATAATGTTTTTATTTCAATTTATT
TCCAGCTGAGCGAGCCATTGATACTTTGAACTATGACCCCATCAAAGGAC
GTCCGTGCCGTATCATGTGGTCTCAACGTGACCCAACTCTACGAAGATCT
GGTGTTGGAAACATTTTCATCAAGAACTTGGATAAGCATATCGATCACAA
AGGTCTTTATGATACCTTCAGTGCTTTTGGAAACATTCTCTCATGTAAAA
TTGCTGCTGACGACAAAGGTCAATCCAAGGGCTATGGTTTTGTTCATTAT
GAAACTAAAGAAGCTGCCCAAGAAGCTATCAGCAAAGTCAACGGCATGAT
GTTGAACGACAAGAAAGTGTAAGTGAAACCTTTTCAGAAGCTTAACTTGG
ATTAGTGAGTAGCAAGCTATTTCAAACAATTGATGACTTGTTTGGCTGTG
TTTGTCTCATATCAAACATGATAATCTTGGAGTGTTCTTGGCTGACCCTT
ACTATAATGGTAGTATGTGTATATATAGTATGTATGGGTTTTAATACGAT
AATCAGGCTCAGGATTCAATTAAGAACTTTTTTATTGTTTTAGCATAAAA
TAATGCAGTCAAAGCCAATAGAGTGCTCAATTGCAAGTAGAGTGATTTTG
GTTTCCAAATGTCCTTATTATTCAAAGATATTTTGAATATATGTTTTTAC
TATAAGTTTAAGTACTTCAGGTGTACAAACCTTCACAAGCAGAAACTTCC
GCAAGATAGAAAAGCTGCAAAATGAATTATATACCCTTTCAAGAATTTTA
AAAGACATTAACTTTTGCCAAAACGGCTAAAATCTGTCAAGATCAAGATT
TTCTGCTCCCAAAAGTTTGTCACCTTAGCATATTTTTATTGGCCTGTTCA
ACTCAAATTAAACTGCTTGACTTACATTCTACTTTAACTTCCGTCTGATT
GTTGGCATGGTTTTATCTCTTATTTCACGGTTTCGCTCATCAACTATGAT
TTTGATTGTTTACTCATTTCAGCTTTGTGGGAGAATTCATGTGTAAGAAA
GAGCGTGTGGACCAGATTGGTGACCAACAAAAGAAATTTAAGAACATCTT
TTGCAAGAATTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGT
TTCAAGAATTTGGAGAAATCACCAGTTGTGTTGTTATGACTGATGAGTCT
GGAACAAGCAGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGC
TGAAAAGGTGAGTATCCATTAAGAGGTCAAGCTATATTCAATTTGAAAAG
CTCTCCAATTTTTCTTGGTCCTTTTTCAAGTTTACAAACAAACACTAAAT
GGAACTGAATGTTCATTAATTTTCTTTAATTTCCTCAGGGAAAATTTAAT
AAATTTCTCAAATACCACCCTTTCGGTGTTTTAGTAGCAAGTTTTTTTGG
TATACCACCACATCACTAACAACACGATAGTTTGAGTCACNTCTCATATC
AAACATGATAATCTTGGAGTGTTCTTGGCTGACCCTTACTATAATGGTAG
TATGTGTATATATAGTATGTATGGGTTTTAATAAGATAATGAATCAGGCT
CAGGATTCAATTAAGAACTTTTTTATTGTTTTAGCATAAAATAATGCAGT
CAAAGCCAATAGAGTGCTCAATTGCAAGTAGAGTGATTTTGGTTTCCAAA
TGTCCTTATTATTCAAAGATATTTTGAATATATGTTTTTACTATAAGTTT
AAGTACTTCAGGTGTACAAACCTTCACAAGCAGAAACTTCCGCAAGATAG
AAAAGCTGCAAAATGAATTATATACCCTTTCAAGAATTTTAAAAGACATT
AACTTTTGCCAAAACGGCTAAAATCTGTCAAGATCAAGATTTTCTGCTCC
CAAAAGTTTGTCACCTTAGCATATTTTTATTGGCCTGTTCAACTCAAATT
AAACTGCTTGACTTACATTCTACTTTAACTTCCGTCTGATTGTTGGCGTG
GTTTTATCTCTTATTTCACGGTTTCGCTCATCAACTATGATTTTGATTGT
TTACTCATTTCAGCTTTGTGGGAGAATTCATGTGTAAGAAAGAGCGTGTG
GACCAGATTGGTGACCAACAAAAGAAATTTAAGAACATCTTTTGCAAGAA
TTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGTTTCAAGAAT
TTGGAGAAATCACCAGTTGTGTTGTTATGACTGACGAGTCTGGAACAAGC
AGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGCTGAAAAGGT
GAGTATCCATTAAGAGGTAAAGCTATATTCAATTTGAAAAGCTCTCCAAT
TTTTCTTGGTCCTTTTTCAAGTTTACAAACAAACACTCAATGGAACTGAA
TGTTCATTAATTTTCTTTAATTTCCTCAGGGAAAATTTAATAAATTTCTC
AAATACCACCCTTTCGGTGTTTTAGTAGCAAGTTTTTTTGGTATACCACC
ACATCACTAACAACACGATAGTTTGAGTCACATTTTAGTACTGTCCACCC
CTGTTGAAAATAGGATGAAAATGAATAAACTGATTCTTTTTTCTCTAGGC
TTGTGATGAGTTGAACAATAAGGAGATTGATGGAAACAAAATCACTTGTT
GCCGTGCTCAAAAAAAAGCTGAAAGATCCATGGAATTGAAAAGCAAATTT
GAACAACAAAAGAACGAGAGAATTAGCAGATATCAAGGTATCCAAGCTGA
AATCTTTCGAGTGTTGTATCAAGCAGTGTTGAAATCTAGTTTTAAAGACA
ACCTTTTAATTGTTATTTAATGAATTCCGCTTCGTAGGCATTTCTGCCTC
TTCGAAAAGATCTTCTATAAAGTTGCTTAGAAAAAATTCGTTGTGTTAAC
TTCAAAGTTCTCTTCTATCCCGTTTGGCTTCTGGAATCTTTGCATTCTTT
CTCTAAGTTAGCCCTTAGATTTGATTTTTTTAAGAATGATTAATTTGTAA
AACCGTGAAAGGGTAGTACTGAGATTTTGACAACAATTCATCTTCATCTG
TTAATTTTCTTTCTAGGTGTTAACTTGTACATCAAGAATCTGGAAGATGG
CATCGACGATGAACGTCTTCGAACTGAATTCTCTCAATTTGGAACCATCA
CCAGCGCGAAAGTCATGAAAGACGACAAAGTAAATTCCAAAGGATTTGGT
TTCGTTTGTTTTTCGTCTCCTGATGAAGCAACAAAAGCAGTCACAGAAAT
GAACGGACGCATCATTGTCACCAAACCCTTGTATGTTGCATTGGCTCAAC
GTAAGGAAGAACGTCGTGCACAATTGTCTACTCAGTTTATGCAGAGAGTT
GGTCCTCTAAGATATCAACCTGGAGCCGTAAGTTGACTCTTTTCTCCTTT
GGAAACTTTCTGCTTGAAACTGAATTGAATATTAATATCCACGAAACTCT
TTATACATTATTTGATGTTATATATCAAAACTCATTTAGCATAGAAACAA
AACTTAAAAAAAAAAATTTATGTAAAGTTCGCTTGTTTTTGCGTGTACTT
TCAAGAATTTAAAATTTAAAATTTCGAGATACAATTAGGGTGCTACAAAG
TTTTACGGGATGGTTTTACTAAGCCTCGTTAACGGCTTATCTCTTAAAAC
TTATTTTGCCATTATTTTTCAGGGAATGCCTCAGCAACAAGGTTATTCCT
TCCAGCCAGGCCAACCAAGCTTCTATATCCCAACGATGCCACAAGGTCAA
CGTGCTGCCTTCATTGCTCAACCAGTGAGCCAAATGACCAGACCTCGATG
GCAATCAGCAAACGTACGTCAAATGCAAGGTGGATACCCCAACCCTGGAG
GAAACGTTCGCGGATCACGACCAAGACACCCCAACTCGGTCCAACCCCGA
CGTGAAACACCTTACAATCAGAAATTTCAACAAGGAGGCAATATGCCAAA
CCAAGTGATGCGTGCTGGTGGTCCAGTACCAAACCAAAGAGCTCAATACA
AATTGAACCAAAATACACGCAATCAATACCCAGCTGGACCAGCACCTCCA
GCTGTTGTCCCACAACAAGTTGCTGATCAACCAGCTCCAATGATGCCAGG
AGTAAGCTAATATTGTTATTGTAGTTATCTGTTAGTGTTAAATTAGGAAG
TGTAAGAACTATTGCGAATCTGACGTTTAGTCTAACCTAATGCGTTGTGC
TACTTTGGAAAAATTTCCCTCGTAATTAAACTGCTAGTAACGTTGTGTTT
TTGTTTTGTTTTTCAGCAACAAGAGCCATTGACTGCTTCCACTTTGGCTG
GAGCCACTCCATCCGAGCAAAAGCAGATGATTGGTGAACGTCTTTTCCCC
TTGGTCCAAGAACATCAACCCAAGATGGCCGGCAAGATCACTGGAATGTT
GTTGGAGATCGATAATGGTGAATTGTTGAACATGTTGGAAAGTCGTGATT
TGTTGAAAGATAAAGTGGGAGAAGCTGTGGCAGTACTTCAAGCTCATCAA
GCTAAAGAGGCTCAAACCCAGGCTAAGACTGGTGAACAAGCCTAATTCCC
TTCACACCCTAGCGTTGAGCATGCTTTGAATGGACTAAAAGAAAGTTTTA
ATGGAAGATTATTTCGGAAAGTTGTGTATGTTTTGATGTTTTTTGAAGCT
TTGTTGTTTTGAAAAATTTCTCTGGAGAACGTTTTTCTGCTATTCCGGCG
CTGAAGAAATTTAGTTTAACTTTTATTTTTTAGTAAAGAAATACTATATA
TGGAAATTTTACAGTATATTGCATAACAGGATTGATTAGGACGGTATTTA
TCAGAGGTTTTAAGGATTTTTATCGTTAATGTGAAAGTTATATGAAAGGG
TTAACAATGGTTTATGTGTTGATGGATCTTAAAATTTCTCTGTGCCTCTT
TTAAAATCTAGTTTGCAATCAATATGTTCTTCTAATTTTCTATGTACACT
TTATTTTTTCATTAAAATACATAAAATAAAAACAGACAAAAAACAAAAAG
GTCATGTCGACTGTAAACTTTGCATGTTTGTATTTGGTATCGCTTGTGAA
CAGTACTGAATCAATCTTCCATTTATTGTAATNTGTTTGTATTTGGTATC
GCTTGTGAACAGTACTGAATCAATCTTCCATTTTTTGTAACATTGTAGTA
TGGTATTATGTCATGAAAGAAGAATATAGCAGCATGCTTACACTTAACCA
AACAATGCGTTTTCTATATTTTTACTTGCCAACTTTATTTGCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000184-exon-sc0000001-1575043694:1004765..1005215 | TCONS_00000184-exon-sc0000001-1575043694:1004765..1005215 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:1004423..1004630 | TCONS_00000184-exon-sc0000001-1575043694:1004423..1004630 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:1001498..1001810 | TCONS_00000184-exon-sc0000001-1575043694:1001498..1001810 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:1000609..1000843 | TCONS_00000184-exon-sc0000001-1575043694:1000609..1000843 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:999129..999267 | TCONS_00000184-exon-sc0000001-1575043694:999129..999267 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:998489..998799 | TCONS_00000184-exon-sc0000001-1575043694:998489..998799 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:997765..998193 | TCONS_00000184-exon-sc0000001-1575043694:997765..998193 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1575043694:996620..997599 | TCONS_00000184-exon-sc0000001-1575043694:996620..997599 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:1004765..1005215 | TCONS_00000184-exon-sc0000001-1510915933:1004765..1005215 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:1004423..1004630 | TCONS_00000184-exon-sc0000001-1510915933:1004423..1004630 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:1001498..1001810 | TCONS_00000184-exon-sc0000001-1510915933:1001498..1001810 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:1000609..1000843 | TCONS_00000184-exon-sc0000001-1510915933:1000609..1000843 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:999129..999267 | TCONS_00000184-exon-sc0000001-1510915933:999129..999267 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:998489..998799 | TCONS_00000184-exon-sc0000001-1510915933:998489..998799 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:997765..998193 | TCONS_00000184-exon-sc0000001-1510915933:997765..998193 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1510915933:996620..997599 | TCONS_00000184-exon-sc0000001-1510915933:996620..997599 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:1004765..1005215 | TCONS_00000184-exon-sc0000001-1491911889:1004765..1005215 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:1004423..1004630 | TCONS_00000184-exon-sc0000001-1491911889:1004423..1004630 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:1001498..1001810 | TCONS_00000184-exon-sc0000001-1491911889:1001498..1001810 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:1000609..1000843 | TCONS_00000184-exon-sc0000001-1491911889:1000609..1000843 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:999129..999267 | TCONS_00000184-exon-sc0000001-1491911889:999129..999267 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:998489..998799 | TCONS_00000184-exon-sc0000001-1491911889:998489..998799 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:997765..998193 | TCONS_00000184-exon-sc0000001-1491911889:997765..998193 | Clytia hemisphaerica | exon |
| TCONS_00000184-exon-sc0000001-1491911889:996620..997599 | TCONS_00000184-exon-sc0000001-1491911889:996620..997599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:996620..1005215 - |
Blast
BLAST of TCONS_00000184 vs. Swiss-Prot (Human)
Match: PABP1 (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 384/646 (59.44%), Postives = 465/646 (71.98%), Query Frame = 2
Query: 476 SSANYPIASLYVGDLSPDVTEAMLFEKFSATGPVLSIRVCRDLVTRRSLGYAYVNYQQPADAERAIDTLNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAADDKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQRVGPLRYQPGAGMPQQQGYSFQPGQPS-FYIPTMPQGQ-RAAFIAQPVSQMTR----PRWQSANVRQMQGGYPNP----GGNVRGSRPRHP-NSVQP-RRETPYNQKFQQGGNMPNQVMRAGGPVPNQRA-----------QYKLNQNTRNQYXXXXXXXXXXXXXXXXXXXXMMPGQQEPLTASTLAGATPSEQKQMIGERLFPLVQEHQPKMAGKITGMLLEIDNGELLNMLESRDLLKDKVGEAVAVLQAHQAKEAQTQA 2344
S+ +YP+ASLYVGDL PDVTEAML+EKFS GP+LSIRVCRD++TRRSLGYAYVN+QQPADAERA+DT+N+D IKG+P RIMWSQRDP+LR+SGVGNIFIKNLDK ID+K LYDTFSAFGNILSCK+ D+ G SKGYGFVH+ET+EAA+ AI K+NGM+LND+KVFVG F +KER ++G + K+F N++ KNFG + +++L LF +FG S VMTDESG S+GFGF++FE HEDA+KA DE+N KE++G +I RAQKK ER ELK KFEQ K +RI+RYQGVNLY+KNL+DGIDDERLR EFS FGTITSAKVM + SKGFGFVCFSSP+EATKAVTEMNGRI+ TKPLYVALAQRKEER+A L+ Q+MQR+ +R +P +QP PS +++ +PQ Q RAA+ P SQ+ + PRW + QG P+P G +R + PR P ++++P + P Q+ N Q M GP P A QYK RN A P V QQ A QEPLTAS LA A P EQKQM+GERLFPL+Q P +AGKITGMLLEIDN ELL+MLES + L+ KV EAVAVLQAHQAKEA +A
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG-RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR-----AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSPRWTA------QGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM---GPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-----QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626 HSP 2 Score: 168.318 bits (425), Expect = 2.321e-43 Identity = 100/298 (33.56%), Postives = 160/298 (53.69%), Query Frame = 2
Query: 734 DPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAAD-DKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQ 1624
+P+ + ++++ +L + LY+ FS G ILS ++ D +S GY +V+++ A+ A+ +N ++ K V + +R + ++ NIF KN N L F FG I SC V+ DE+G S+G+GF+ FE E AE+A +++N ++ K+ R + + ER EL ++ + + N+YIKN + +DDERL+ F +FG S KVM D+ SKGFGFV F ++A KAV EMNG+ + K +YV AQ+K ER+ +L +F Q
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
The following BLAST results are available for this feature:
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