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TCONS_00000176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000176
Unique NameTCONS_00000176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000176 ID=TCONS_00000176|Name=TCONS_00000176|organism=Clytia hemisphaerica|type=transcript|length=1725bp
cctatccggatcgataagtaatccatcgatcacatatcgatccgtcatcg
agccgctccgatgatcgatcctatcgagcgcgggggtctggaatATAAGA
TAGAAAAATTTCCCTGACTGAACACCCACGACATTCTGATAAAAGCAAAA
GATCTATTTCGAGAAGAGGTGTCTTACCATTGTATCAAAACACCTTTCTG
AACGTTCACCATCGTTGATAGGTATAGAAAATATGAACAAATATGCCAGA
TGAAATCTTTTAAAGTTGAAAATCTTTAATGCGACTgcgtttttctgact
ttttcttCTCTTGATAGATTTCATAATGGTCAAGAATggactttcgtttt
ctaatatttagaaaacaacttttaatttaCAGACCGATAATTGTCGACAT
TACCCAGCCAGTTTTATTGAACCAGCAAGCTAGTCCGATCCCCATTTCGG
TTATGTATTACAGTCTGTATTTTCTTTGGTCGACAATTACATAATCATTT
CTTTAGTTTTCCTTCAACGTGCGCCGCAGCGTCCACTACTAAATTTTGAT
CGGACCAAAGATGTCCGCCaactaaaaaaattagaaatggacttaaaata
acaaaaataagcTGCTGTTGGAAGTAATTTGAAAAGCAAAATGATGAATG
GAAACTATCCTGAAACAGATTACTCCTCTGTTGGAAATATATCAgTGTAC
TCGTCCGGACTTGGAAGCTTGTCACCTTACTTGAATGTTGACCCTTCCTT
TCTACACCAGGATGGTGGAGCTGAATTCGTTTTTGCCGAGGACAGTCATA
AAAAGAGAGGCTGGGGTGAACGGATGTTTACAAGTATTGGTTGGTCATAT
GGGTCCGGTCTTTTGGTTGGAGGAATCTGGGGTCTTGCTGAAGGCCTACG
TAGACCTGATGGTACAACATTCAAATTGCGATTGAACAGtGTACTCAATG
GGTGTACAAGAAGGGGTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGct
ttattgtATGGTTGCACAAGTACTGCAATTGAAAAAGCTCGTGGAGTTGA
AGATGAATACAACTCAATAGCTGCGGGTGTTACAAGTGGTGTCCTTTTTA
AATCAACGGGTGGACCACGTGCGATTGCTATCGCAGGAACCATTGGTGGG
GCAGCTGCGCTCATGTTTATTGCATCAAACCGCTTATGGAACAATAGAGG
ACAGACCTGGAGCAAGTCACAGCCTAATTGGGCTTAAAATTAAACTTGAT
CATTGTCAACATATCAAGCTCATACAAGAACCTATTTTGCATTAATCAAC
GAAAATAATTCGTCTTGATTTAGCGTTGACAAAGAGAATCTGAACTTTAA
CAGTTGAACTTTAAAACAAGTGCAAAATGGCTTCTTTGTTTCTGAACTTC
ACaccaaaaaaaacgtaaaatcttCAACATATCAAAACATTATGGAAGAC
TTTTTATAAACAAGCTTTTTCTCTAAAAGATAGAAGCAAGACTCTACTTG
tatattttaacttttattgCCTTTTGACAGAcatattttgtaaaataatt
tttttttcagatttaaaaTAATGGAGTTAGAATATAGTCTTTTATGAGAT
TTTGCTTTCGATTAGGGTTGTTGTGGTCTGTTGTGGTCATCTTTTAATCC
CGGCTTTCtaacttttgattaaaaagatTACCGTTCTAAAATATGTACCA
TAATTCTTTCCTTGGGAAAAATTAG
Run BLAST on NCBI

protein sequence of TCONS_00000176-protein

>TCONS_00000176-protein ID=TCONS_00000176-protein|Name=TCONS_00000176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MMNGNYPETDYSSVGNISVYSSGLGSLSPYLNVDPSFLHQDGGAEFVFAE
DSHKKRGWGERMFTSIGWSYGSGLLVGGIWGLAEGLRRPDGTTFKLRLNS
VLNGCTRRGPFLGNSLAVVALLYGCTSTAIEKARGVEDEYNSIAAGVTSG
VLFKSTGGPRAIAIAGTIGGAAALMFIASNRLWNNRGQTWSKSQPNWA
Run BLAST on NCBI

transcript from alignment at sc0000001:757420..766970-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000176 ID=TCONS_00000176|Name=TCONS_00000176|organism=Clytia hemisphaerica|type=transcript|length=9551bp|location=Sequence derived from alignment at sc0000001:757420..766970- (Clytia hemisphaerica)
CCTATCCGGATCGATAAGTAATCCATCGATCACATATCGATCCGTCATCG AGCCGCTCCGATGATCGATCCTATCGAGCGCGGGGGTCTGGAATATAAGA TAGAAAAATTTCCCTGACTGAACACCCACGACATTCTGATAAAAGCAAAA GATCTATTTCGAGAAGAGGTGTCTTACCATTGTATCAAAACACCTTTCTG AACGTTCACCATCGTTGATAGGTATAGAAAATATGAACAAATATGCCAGA TGAAATCTTTTAAAGTTGAAAATCTTTAATGCGACTGCGTTTTTCTGACT TTTTCTTCTCTTGATAGATTTCATAATGGTCAAGAATGGACTTTCGTTTT CTAATATTTAGAAAACAACTTTTAATTTACAGACCGATAATTGTCGACAT TACCCAGCCAGTTTTATTGAACCAGCAAGCTAGTCCGATCCCCATTTCGG TTATGTATTACAGTCTGTATTTTCTTTGGTCGACAATTACATAATCATTT CTTTAGTTTTCCTTCAACGTGCGCCGCAGCGTCCACTACTAAATTTTGAT CGGACCAAAGATGTCCGCCAACTAAAAAAATTAGAAATGGACTTAAAATA ACAAAAATAAGCTGCTGTTGGAAGTAATTTGAAAAGCAAAATGATGAATG GAAACTATCCTGAAACAGATTACTCCTCTGTTGGAAATATATCAGGTATT TTTTTTAGTTTTTAAGGGGCAACAAAACTACTGCCGGTTAACAAGTAAAT AGTTTTCACCTCCAATCTCAGGTAATCCTCTACTTTAATACTCTACTATT CTCTTAATTAGAGTAAAATCCCGTCTGTCATAGCAACTATTTGGTTAGCC TGGACATCCAAACTCCAGACCAAAAAACAATTTCACCTTTTAGCTGGTCT GGTCCAAACTAACAAGAGCAGAACTATCTATCTGTTCTGTATCCTCCGCC CGACTAGGCTCTCCTGGATTATATCATCTGTTCTGGGAAAAAATGGGACT CTGTTCAAAATAAAAATTCTGAAAATGCATATCTGTTCTTAAGAAATATT ATGCTCCGGGAAAAATATAACAGCTATCCCCTTCAGTATAGACCTAACTC TTCATACAAAAATTACAGAAAAACGCATGTTTGGACTTTGTACCCTATGC TGCACGCAAGCACTTAAGCCAAAGTTCCACAAAGGCGGGACAAAAATCAG TTTTTGAAGTTTGCAAAAAAACGCCACATAGAAGATCTTTCAAATTCAGT ATATATCACAAGTGTTTCAACCGGTATTCCAACGAAGCCATATTTTGGTT TGTACAGAAATTTCGCCCGCTCAANTCACGATTCACAAGTGTTTCAACCG GTATTCCAACGAAGCCATATTTTGGTTTGTACAGAAATTTCGCCCGCTCA AATCTAAACAACAAAATGGTCAAACTCACTAAAGCAAAACATTGCCGCCA CGGCATTTCCCTAGATAAAATTCTGGTCATGTGACCATCCGTGATTTTAG ACCAATGAAAACGCTTCATTTCCCCGGATTAAAGTTGTGTCTACACTAAC AACCGGGAACTAGCTAGAAAAAGAGAGAAAAAACCGGGGGTCAAATTAAA TGTTTCTCCCTTCTTGCGGCAAACATAAAAGACTTTAAGAGGCCATTTAT TTAAGAAAGGGGTGTTATATCATAAATAAATTATATAAGTAAGTGATATT TTAAGTAATAAGTTCATTAACCAGTCTGAGAAATCCTCTTAATTGCACGC TTATGTTCCGAGGCCGTAAGCGCGCAATTGCACGGTTATCAAAATGGCAG AATTTTTAAGCGTGTAATTACAAGCTTATCGAAATTGTTCTGAAACAGGC GGTAAGCGTTCAGCAAGATTGACAGGTGACGGCTTTTGCGGTAAGCATGT AAGTAATTGCACGCTTTAAAATTTCCTATATTTTTGACACGTAGTTCCTT CTGAAAGCTATGTTGAATTTCAAAAGCCTAGGGCAGTTTTACTCAAAATT TATCGTAGAAGAAGATTCCGTAAAAATGGATTGCCCGTTAAATTTTTCAG TTTTCAATAACATGAAAACCAGAATATGGTTTTTCAATGGAAATAAAAAC TATAAAGTGCACTTTATACAAACATCAATTTGTCAGATCTAACAAAATTA ACAACAGCACTGTCATCATTGACAATAAAACAAACGATATTTTGCCAAGA GCCTTGCAAAAACATTCCAACAACTTCCATCAAAATGATCTGCCACAACT ATGTCTACCATTTTAGCGCGCAGTCTGAGGATTGAGCTGAGAACGCTCAC AGAACGCCTGTCATCTCCCGCACGGGTAAAAAAAAATTTAATATTCCAAA GCAAAAAGACGCAATGCGATTCTAGCTTTACAATAGTGGCGCAGATCATC AGTGAAGAGTATTCAATTATCATTACCGTATCCTTTTATTTTCATTTTTA GAACTTTTGCAAAAAAAAGGAAAAATAGAAAAGTTGTATTTTCTACTGCT CTATTCAAATACTTAATTTGAAAGATCTTCTACTGTATGTGGCATTTTTT TGCACTGATTTTTGTCCCGCTTTTGCGGGACTTTAGCTTAAATGCTTGCA TGCAGCACAGGGTACAAAGTACAAATATGCAAAAAATCTTTTTCTGATTA TGCTTGGGGGTACCTGCATTTTCACTAGTGGGGGCAGAGGCTGTTGTTTT TGTATGAAGTCATGGTGACCAGCGACCCTTGAAACCCTTGAAACACCCTT GATTCTTTTCCTGCCCTGGAAAATTTCCTTGAAACCCTTGAAATGCCAAA TTTTGTGGCATATTTCAGCCATTTTAACTTTCAGGAATACAAAATTTTTC AAACATGAGTGTATTAGATGAGAAAATATTCTTTTGGAACCCCTGAGATT CAAGGTGATGATATTCCAAGCTCGTTCTTAAAGGGGTTTATCTTTTAACC CGTTAAAGTGCCACTTGAGTTATATGAGATCGGCAGGTCTGGGTGATAGA ATGAGTGGTTGTAAAATTATCAATTATCAGCCAATCTAAAGCACTGAAAA TCAAAGATTTTCCCCGTCAGGCCAAACTATAGCTGAGCCCTCCTTTACCT CAACTTACTATAAAGAAAAAGTACAATTAATCTGCCCCCCCAGACCCTCG CTACCACCTGCTACCACATAGATCTTTTTTCTTGAAATGATTATATATAC AAATAAACCAGCTGCGCTGGAAGCTCCGGCTTAAGAGATTAAAAGATGTG AAAGATGAGCTTGTTGAGTTAGTTGTGTTNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNATTTTCGGCCAATCAAATCACAGTATTATCGGAATCAG TGATCCGTTTTTGTTAAATCGGAATAGATCATCGGATTAGATAAACAGAC AAAAAATGTCTTGACCCTTCTTCTTGTCGGAAGAGAGAATTAAAGGCTCC TAGGCCGGAGCAATAATGATCTTCCAAACAGGATGATCTTATCATGTCTA CCATTCAAACCATGAATTTGTTCTGCTTTAAAAAATTTGATCTTTAGAGT TACTTTTAATAACACATTTAATCATATACGTACACACTTTTTTATTATAA GAATATCTTCTATAAGAATATCAGGGTGAAAATTGGCCAAATTGTAAGAA TACCCTAAGAATACCCTGTAGGGTGAATTTCACAAAATTTGATAAGAATA CAGTTTTGGTTAACTTCCTTAGTTAGAGATAAATTGAAGGTTTGAAGAAG AAATGTAATTTTAAGGTTTAAACCCAAATGTTCACTCTAAAGTCCAAAAC TCCCAAATTGATCATTTCTCATGTTTGTAAAAAAGTCTAAAGAAAGTCTA GAAAAGTAAGAATACGTTAAGAATATTTCACCCTCAATTTTGGCACTTTT TTAAGAATACTTGACCCTCATCCAAAGTACACTATTCTTATAAAAAGAAA AGCGTATAGGTTGCAAATTGCACTGTTTGTATTTTTGTACTTTAGTGTAC TCGTCCGGACTTGGAAGCTTGTCACCTTACTTGAATGTTGACCCTTCCTT TCTACACCAGGTAAGATTTATTAAACAGCTACTACCACCTACTTTCAATG GCATCAAAAGCACCAATCAAGGGTGATTGGAGCAATCTAGGAAGAAAACC TTTGAGAGGATAGCTATCATAAGAGGATACTTTAGGTTGGTTGATGTTGT CAAAGACTTTACCCTAAAGGAAAGACAGAAGGTTGACTGAGTTGGCCGCT TCAAATCTTTTGAAAAAGGTTGTAAGTGAATGCATTGGTATCCAGAGAGG GTTGACTTAAGGGTCCAGATGTTGACTTTCCTCTCGCTAACTTTTGTCAG AAATGAGGAAAGGGACCTTAATTCCATAAATTTTCATGCGCCTTTTTATT TACGTGCGCAAAAATAAAAGGAGCACGAAATAGCCTATTTTCACGCACTT GGAGGCGCGAAAATTAAAGGGTGCGCAAATTAGTAATGGTTCTGAACGTG TAGAAATCTCATCTTAAGGCTTTTTTACTAAAATGGGACCTCGATTCATG GTAAATATGCCTCTGGGATGTAAGATCTAGCTTGAATACACACTGAAAGC AAGTAGTTAACTCACTTTAATCATCAAAAACACTCAGAAAATATGCCAGA AATTGCAACATGAGTGAAAATTAAAGGATTCGGGAATATTTTATTTTACA AGCTGCGCGAGAATTAAAGGCGCGAAAATAAAAGGCGCGCAAAAATTAAT GGAATTAAGATAGAGACTTGATCAATTAAATTAGAATTTAGAAACAAAGT CACATTTGAGAATGCTTTTGTCGGCATGCCAACAACCACTAAAAAATACG CCTGTGTTCTGTGGGCCAGGGACTAAGTTTTTTTCCTTGTTTGCTACCAG GGGTATCAGCAGTAGGTTCTGGTAGGTTCAACATCTCTTTAACTTTTAGG ATGGTGGAGCTGAATTCGTTTTTGCCGAGGACAGTCATAAAAAGAGAGGC TGGGGTGAACGGATGTTTACAAGTATTGGTTGGTCATATGGGTCCGGTAA GATATGACGTACCTGAAAGGAACTAATTTGTCCAAATTTTGCCAAAATAA GGTTGCCTCACCAAAATATGATTCATTTAATTATTTTTTCATCATCTGTA AAATAACTCCCTAATTTCAAACTTTTTTACTAACTTTTTTCTTGCTGTTA TTTGGCAAAGTCAGTCAATCTCTTACTAAAATATGCTCCTCTCCAAATTA TTTTTATTGTATTTTTGTTACTCACACTAAACTTAGACTTTTTCTTAGGA TAATATCTTTTTAAATAGAAATGTAAGTCCTCCATACAAATTTACTCCAA GAATCTCATTTCAAAGCTTTCCTTTTTTATTGAAAATGAAAAATTATGGT CTGAAAAAAATACAAGGAAATACACCCAAAAGAAACCTGTTATTTACAAA TTTTTATATTCTAGGTCTTTTGGTTGGAGGAATCTGGGGTCTTGCTGAAG GCCTACGTAGACCTGATGGTACAACATTCAAATTGCGATTGAACAGGTCT GTCTTTTTCTCAAATGAAAGTAATTTACTCAAGGTGGTCAATGAAATTAG AAAATAGGGTTTAGTCACAGGGTACTTGTGCCCCTAAAAGTGCCTTTGGC CCTATGTTATGACTCGAGTCCAACCCTGACCCTAACTGATAATAATCAAA TCCTGACCCCCGGAAAATTATCACAGATAGAAAGAACGAAAAAAATTGCT GATTGACAAACACCCTCTTGTTACTTATATCTCCAAACAAAATGTAATTA GCCATTATGAAAGCAAAACAGACGTTTCTTATGAAAGTATCAATTGAAAT AATATGGGTTTAATAATAATTGAGTAAATTTCACTACCTAGAAAGGTAAG AAGCACTATACTGTTAACCCTTGCTAATTCGAATTGAAACAGGAAGTCTA ATTTTGTTCAAATTATAGAGAGTATCTCAGGCTGCATCGTTTAAGGCGTG TGATAGCACGCGCACGCCTCCACACACACCTAAAATCTCTGAGCGGTGTG ATCAATCACACGCCATAAATGCAAATTTCACTACTAAAGTTGTACACAGC ACTCCTTATCACACGCCTAAATTCCAAAAAATAAAGTTTTGGGAGTGTGA TTGACCATACGCCTGCATTTTTCAAATGACAAAGCCGGGTATCTTTTGAG ACTTTTCCTTCAACTGGAACTGAAAATTAGTTTGAATTATAGAAGGATTT GTATGATAGAAGTTTGAATTAGTGAGAGTCTACTGTATGTATAATAATAG TTTGGATCACAATTTTCGGCTGATGACTTATTAACCCCAGGCTCTACTGG TACTGAAATAGTTTGGTTTATATTGATGACAGATTGTTTTTTATATGTTT TCTTATTTATTTTAGTGTACTCAATGGGTGTACAAGAAGGGGTCCTTTTC TTGGAAACAGCCTTGCTGTTGTAGGTGAGTGATATGATATGGTTGTCATC ACAAGTGATAACTAAATAAGCATTGAGATCAGCATTTGGGGTAAATTTAA AAGATTTTCAGTGTGAATTCCCTTTTGTAAATTATGATTTTTAACTCTTT CACAGAAGTTTTTAAGTGTATAACAGATAAGGTTTAAAAAAGTTTGAAGG ACTTAGGTATAGACATTACTAAAGATGATTTGTATAATTCCTTGTTTTAG CTTTATTGTATGGTTGCACAAGTACTGCAATTGAAAAAGCTCGTGGAGTT GAAGATGAATACAACTCAATAGCTGCGGGTGTTACAAGTGGTGTCCTTTT TAAATCAACGGGTATGTAAACTTAATAATTACGCATTACCTTTTAAGGAA ACTATACTTCACTATATTTCACAGGAAGTTTTATTATCAGCTTTGGATGT CTACCGTGAAAATTATTTCCACAAAATAAAATCCGTAAAGAAGCCTTTGA GTCTTAAATGTCTTAAACCATTAAAATATTTGAGTCTCAACTACAAATTT AGGTTCTACAAAAAGCTTATTTTATAACGTTGCAATACAAAAAGTAGTAT TTTTTGGGGGCGACAGGACAAGTTCTAGTGCCAAAACAAAGTTTTAAATC AGACAGCCTTAAGATTTTCAAAAAATGATCAGCACATTCAACAGTATTGA AAATCAAATTATTTTTACTACTAAATTATTTTCAGGTGGACCACGTGCGA TTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTCATGTTTATTGCA TCAAACCGCTTATGGAACAATAGAGGACAGACCTGGAGCAAGTCACAGCC TAATTGGGCTTAAAATTAAACTTGATCATTGTCAACATATCAAGCTCATA CAAGAACCTATTTTGCATTAATCAACGAAAATAATTCGTCTTGATTTAGC GTTGACAAAGAGAATCTGAACTTTAACAGTTGAACTTTAAAACAAGTGCA AAATGGCTTCTTTGTTTCTGAACTTCACACCAAAAAAAACGTAAAATCTT CAACATATCAAAACATTATGGAAGACTTTTTATAAACAAGCTTTTTCTCT AAAAGATAGAAGCAAGACTCTACTTGTATATTTTAACTTTTATTGCCTTT TGACAGACATATTTTGTAAAATAATTTTTTTTTCAGATTTAAAATAATGG AGTTAGAATATAGTCTTTTATGAGATTTTGCTTTCGATTAGGGTTGTTGT GGTCTGTTGTGGTCATCTTTTAATCCCGGCTTTCTAACTTTTGATTAAAA AGATTACCGTTCTAAAATATGTACCATAATTCTTTCCTTGGGAAAAATTA G

Coding sequence (CDS) from alignment at sc0000001:757420..766970-

>TCONS_00000176 ID=TCONS_00000176|Name=TCONS_00000176|organism=Clytia hemisphaerica|type=CDS|length=4179bp|location=Sequence derived from alignment at sc0000001:757420..766970- (Clytia hemisphaerica)
GTGGACCACGTGCGATTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCG
CTCATGTTTATTGCATCAAACCGCTTATGGAACAATAGAGGACAGACCTG
GAGCAAGTCACAGCCTAATTGGGCTTAACTTTATTGTATGGTTGCACAAG
TACTGCAATTGAAAAAGCTCGTGGAGTTGAAGATGAATACAACTCAATAG
CTGCGGGTGTTACAAGTGGTGTCCTTTTTAAATCAACGGTGTACTCAATG
GGTGTACAAGAAGGGGTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGGT
CTTTTGGTTGGAGGAATCTGGGGTCTTGCTGAAGGCCTACGTAGACCTGA
TGGTACAACATTCAAATTGCGATTGAACAGGATGGTGGAGCTGAATTCGT
TTTTGCCGAGGACAGTCATAAAAAGAGAGGCTGGGGTGAACGGATGTTTA
CAAGTATTGGTTGGTCATATGGGTCCGTGTACTCGTCCGGACTTGGAAGC
TTGTCACCTTACTTGAATGTTGACCCTTCCTTTCTACACCAGATGATGAA
TGGAAACTATCCTGAAACAGATTACTCCTCTGTTGGAAATATATCAGGTG
GACCACGTGCGATTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTC
ATGTTTATTGCATCAAACCGCTTATGGAACAATAGAGGACAGACCTGGAG
CAAGTCACAGCCTAATTGGGCTTAACTTTATTGTATGGTTGCACAAGTAC
TGCAATTGAAAAAGCTCGTGGAGTTGAAGATGAATACAACTCAATAGCTG
CGGGTGTTACAAGTGGTGTCCTTTTTAAATCAACGGTGTACTCAATGGGT
GTACAAGAAGGGGTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGGTCTT
TTGGTTGGAGGAATCTGGGGTCTTGCTGAAGGCCTACGTAGACCTGATGG
TACAACATTCAAATTGCGATTGAACAGGATGGTGGAGCTGAATTCGTTTT
TGCCGAGGACAGTCATAAAAAGAGAGGCTGGGGTGAACGGATGTTTACAA
GTATTGGTTGGTCATATGGGTCCGTGTACTCGTCCGGACTTGGAAGCTTG
TCACCTTACTTGAATGTTGACCCTTCCTTTCTACACCAGATGATGAATGG
AAACTATCCTGAAACAGATTACTCCTCTGTTGGAAATATATCAGGTGGAC
CACGTGCGATTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTCATG
TTTATTGCATCAAACCGCTTATGGAACAATAGAGGACAGACCTGGAGCAA
GTCACAGCCTAATTGGGCTTAACTTTATTGTATGGTTGCACAAGTACTGC
AATTGAAAAAGCTCGTGGAGTTGAAGATGAATACAACTCAATAGCTGCGG
GTGTTACAAGTGGTGTCCTTTTTAAATCAACGGTGTACTCAATGGGTGTA
CAAGAAGGGGTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGGTCTTTTG
GTTGGAGGAATCTGGGGTCTTGCTGAAGGCCTACGTAGACCTGATGGTAC
AACATTCAAATTGCGATTGAACAGGATGGTGGAGCTGAATTCGTTTTTGC
CGAGGACAGTCATAAAAAGAGAGGCTGGGGTGAACGGATGTTTACAAGTA
TTGGTTGGTCATATGGGTCCGTGTACTCGTCCGGACTTGGAAGCTTGTCA
CCTTACTTGAATGTTGACCCTTCCTTTCTACACCAGATGATGAATGGAAA
CTATCCTGAAACAGATTACTCCTCTGTTGGAAATATATCAGGTGGACCAC
GTGCGATTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTCATGTTT
ATTGCATCAAACCGCTTATGGAACAATAGAGGACAGACCTGGAGCAAGTC
ACAGCCTAATTGGGCTTAACTTTATTGTATGGTTGCACAAGTACTGCAAT
TGAAAAAGCTCGTGGAGTTGAAGATGAATACAACTCAATAGCTGCGGGTG
TTACAAGTGGTGTCCTTTTTAAATCAACGGTGTACTCAATGGGTGTACAA
GAAGGGGTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGGTCTTTTGGTT
GGAGGAATCTGGGGTCTTGCTGAAGGCCTACGTAGACCTGATGGTACAAC
ATTCAAATTGCGATTGAACAGGATGGTGGAGCTGAATTCGTTTTTGCCGA
GGACAGTCATAAAAAGAGAGGCTGGGGTGAACGGATGTTTACAAGTATTG
GTTGGTCATATGGGTCCGTGTACTCGTCCGGACTTGGAAGCTTGTCACCT
TACTTGAATGTTGACCCTTCCTTTCTACACCAGATGATGAATGGAAACTA
TCCTGAAACAGATTACTCCTCTGTTGGAAATATATCAGGTGGACCACGTG
CGATTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTCATGTTTATT
GCATCAAACCGCTTATGGAACAATAGAGGACAGACCTGGAGCAAGTCACA
GCCTAATTGGGCTTAACTTTATTGTATGGTTGCACAAGTACTGCAATTGA
AAAAGCTCGTGGAGTTGAAGATGAATACAACTCAATAGCTGCGGGTGTTA
CAAGTGGTGTCCTTTTTAAATCAACGGTGTACTCAATGGGTGTACAAGAA
GGGGTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGGTCTTTTGGTTGGA
GGAATCTGGGGTCTTGCTGAAGGCCTACGTAGACCTGATGGTACAACATT
CAAATTGCGATTGAACAGGATGGTGGAGCTGAATTCGTTTTTGCCGAGGA
CAGTCATAAAAAGAGAGGCTGGGGTGAACGGATGTTTACAAGTATTGGTT
GGTCATATGGGTCCGTGTACTCGTCCGGACTTGGAAGCTTGTCACCTTAC
TTGAATGTTGACCCTTCCTTTCTACACCAGATGATGAATGGAAACTATCC
TGAAACAGATTACTCCTCTGTTGGAAATATATCAGGTGGACCACGTGCGA
TTGCTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTCATGTTTATTGCA
TCAAACCGCTTATGGAACAATAGAGGACAGACCTGGAGCAAGTCACAGCC
TAATTGGGCTTAACTTTATTGTATGGTTGCACAAGTACTGCAATTGAAAA
AGCTCGTGGAGTTGAAGATGAATACAACTCAATAGCTGCGGGTGTTACAA
GTGGTGTCCTTTTTAAATCAACGGTGTACTCAATGGGTGTACAAGAAGGG
GTCCTTTTCTTGGAAACAGCCTTGCTGTTGTAGGTCTTTTGGTTGGAGGA
ATCTGGGGTCTTGCTGAAGGCCTACGTAGACCTGATGGTACAACATTCAA
ATTGCGATTGAACAGGATGGTGGAGCTGAATTCGTTTTTGCCGAGGACAG
TCATAAAAAGAGAGGCTGGGGTGAACGGATGTTTACAAGTATTGGTTGGT
CATATGGGTCCGTGTACTCGTCCGGACTTGGAAGCTTGTCACCTTACTTG
AATGTTGACCCTTCCTTTCTACACCAGATGATGAATGGAAACTATCCTGA
AACAGATTACTCCTCTGTTGGAAATATATCAGGTGGACCACGTGCGATTG
CTATCGCAGGAACCATTGGTGGGGCAGCTGCGCTCATGTTTATTGCATCA
AACCGCTTATGGAACAATAGAGGACAGACCTGGAGCAAGTCACAGCCTAA
TTGGGCTTAACTTTATTGTATGGTTGCACAAGTACTGCAATTGAAAAAGC
TCGTGGAGTTGAAGATGAATACAACTCAATAGCTGCGGGTGTTACAAGTG
GTGTCCTTTTTAAATCAACGGTGTACTCAATGGGTGTACAAGAAGGGGTC
CTTTTCTTGGAAACAGCCTTGCTGTTGTAGGTCTTTTGGTTGGAGGAATC
TGGGGTCTTGCTGAAGGCCTACGTAGACCTGATGGTACAACATTCAAATT
GCGATTGAACAGGATGGTGGAGCTGAATTCGTTTTTGCCGAGGACAGTCA
TAAAAAGAGAGGCTGGGGTGAACGGATGTTTACAAGTATTGGTTGGTCAT
ATGGGTCCGTGTACTCGTCCGGACTTGGAAGCTTGTCACCTTACTTGAAT
GTTGACCCTTCCTTTCTACACCAGATGATGAATGGAAACTATCCTGAAAC
AGATTACTCCTCTGTTGGAAATATATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000104XLOC_000104Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000176-proteinTCONS_00000176-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000176-exon-sc0000001-1575043694:766276..766970TCONS_00000176-exon-sc0000001-1575043694:766276..766970Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1575043694:761161..761225TCONS_00000176-exon-sc0000001-1575043694:761161..761225Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1575043694:760175..760271TCONS_00000176-exon-sc0000001-1575043694:760175..760271Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1575043694:759675..759756TCONS_00000176-exon-sc0000001-1575043694:759675..759756Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1575043694:758747..758805TCONS_00000176-exon-sc0000001-1575043694:758747..758805Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1575043694:758410..758520TCONS_00000176-exon-sc0000001-1575043694:758410..758520Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1575043694:757420..758035TCONS_00000176-exon-sc0000001-1575043694:757420..758035Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:766276..766970TCONS_00000176-exon-sc0000001-1510915933:766276..766970Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:761161..761225TCONS_00000176-exon-sc0000001-1510915933:761161..761225Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:760175..760271TCONS_00000176-exon-sc0000001-1510915933:760175..760271Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:759675..759756TCONS_00000176-exon-sc0000001-1510915933:759675..759756Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:758747..758805TCONS_00000176-exon-sc0000001-1510915933:758747..758805Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:758410..758520TCONS_00000176-exon-sc0000001-1510915933:758410..758520Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1510915933:757420..758035TCONS_00000176-exon-sc0000001-1510915933:757420..758035Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:766276..766970TCONS_00000176-exon-sc0000001-1491911889:766276..766970Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:761161..761225TCONS_00000176-exon-sc0000001-1491911889:761161..761225Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:760175..760271TCONS_00000176-exon-sc0000001-1491911889:760175..760271Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:759675..759756TCONS_00000176-exon-sc0000001-1491911889:759675..759756Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:758747..758805TCONS_00000176-exon-sc0000001-1491911889:758747..758805Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:758410..758520TCONS_00000176-exon-sc0000001-1491911889:758410..758520Clytia hemisphaericaexon
TCONS_00000176-exon-sc0000001-1491911889:757420..758035TCONS_00000176-exon-sc0000001-1491911889:757420..758035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:757420..766970 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
231.733 242.22 165.716 172.833 175.466 135.863 137.663 144.217 245.507 184.151 329.407 324.163 349.458 352.52 277.256 242.694 276.512 307.377 212.318 211.4 388.187 383.925 238.413 268.351 223.244 239.962 254.645 309.936 186.272 189.552
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003397Tim17/Tim22/Tim23/PMP24
Blast
BLAST of TCONS_00000176 vs. Swiss-Prot (Human)
Match: TIM23 (Mitochondrial import inner membrane translocase subunit Tim23 OS=Homo sapiens GN=TIMM23 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.696e-21
Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  725 PYLNVDPSFLHQDGGAEFVFAEDSHKKRGWGERMFTSIGWSYGSGLLVGGIWGLAEGLRRPDGTTF-KLRLNSVLNGCTRRGPFLGNSLAVVALLYGCTSTAIEKARGVEDEYNSIAAGVTSGVLFKSTGGPR 1120
            PYLNVDP +L QD   EF+    ++K RG  E  F +IG    +G   G + GL  GL+      + K R   +LN  TR+G    N+L  +ALLY      IEK RG ED+ N++AAG  +G+L+K TGG R
Sbjct:   44 PYLNVDPRYLVQDT-DEFILPTGANKTRGRFELAFFTIGGCCMTGAAFGAMNGLRLGLKETQNMAWSKPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLR 175          
The following BLAST results are available for this feature:
BLAST of TCONS_00000176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM231.696e-2142.11Mitochondrial import inner membrane translocase su... [more]
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