Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000153 ID=TCONS_00000153|Name=TCONS_00000153|organism=Clytia hemisphaerica|type=transcript|length=1723bpRun BLAST on NCBI protein sequence of Alcool deshydrogenase >TCONS_00000153-protein ID=TCONS_00000153-protein|Name=Alcool deshydrogenase|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MSDTTGKVIKCRATVAWGAKEPLKMETIEVDPPKAGEVRMKVLHTGVCHTRun BLAST on NCBI transcript from alignment at sc0000001:346302..354514- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000153 ID=TCONS_00000153|Name=TCONS_00000153|organism=Clytia hemisphaerica|type=transcript|length=8213bp|location=Sequence derived from alignment at sc0000001:346302..354514- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:346302..354514- >TCONS_00000153 ID=TCONS_00000153|Name=TCONS_00000153|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at sc0000001:346302..354514- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000153 vs. Swiss-Prot (Human)
Match: ADHX (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4) HSP 1 Score: 502.671 bits (1293), Expect = 2.702e-174 Identity = 257/371 (69.27%), Postives = 308/371 (83.02%), Query Frame = 2 Query: 275 KVIKCRATVAWGAKEPLKMETIEVDPPKAGEVRMKVLHTGVCHTDAYTLSGADPEGAFPVVLXXXXXXXXXXXXXXXTSVKPGDHVIPLYIPQCYNCKFCFSNKTNLCSKVRATQGKGLMPDGTVRFHCNGKDLFHFMGCSTFTEYTVVAEISIAKVDEKAPLDKVCLLGCGITTGYGAALNTAKVEKGSNVAVWGMGAVGLAVLMGCKKAGAERIIAVDINPTKEKIAREFGATEFFNPKDHDRPTQQVLVEMTDGGLDYTFECVGNIHTMRAALEACHKGWGESIIIGVAASGQEISTRPFQLVTGRVWKGSAFGGYKSRDSVPKLVQDYMNGDMKIDEFITHHFPLKEVNDAFHAMHEGKAIRAIVNL 1387 +VIKC+A VAW A +PL +E IEV PPKA EVR+K++ T VCHTDAYTLSGADPEG FPV+LGHEG GIVES+GEGVT +K GD VIPLYIPQC CKFC + KTNLC K+R TQGKGLMPDGT RF C GK + H+MG STF+EYTVVA+IS+AK+D APLDKVCLLGCGI+TGYGAA+NTAK+E GS AV+G+G VGLAV+MGCK AGA RII VDIN K A+EFGATE NP+D +P Q+VL+EMTDGG+DY+FEC+GN+ MRAALEACHKGWG S+++GVAASG+EI+TRPFQLVTGR WKG+AFGG+KS +SVPKLV +YM+ +K+DEF+TH+ E+N AF MH GK+IR +V + Sbjct: 4 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 374 The following BLAST results are available for this feature:
BLAST of TCONS_00000153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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