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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000147 ID=TCONS_00000147|Name=TCONS_00000147|organism=Clytia hemisphaerica|type=transcript|length=1858bpRun BLAST on NCBI protein sequence of TCONS_00000147-protein >TCONS_00000147-protein ID=TCONS_00000147-protein|Name=TCONS_00000147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp MDSTLANCSVTIDLPSNERSWYVYILASLAIYVSGFICILIGRIFWKVIKRun BLAST on NCBI transcript from alignment at sc0000001:224278..250162- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000147 ID=TCONS_00000147|Name=TCONS_00000147|organism=Clytia hemisphaerica|type=transcript|length=25885bp|location=Sequence derived from alignment at sc0000001:224278..250162- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:224278..250162- >TCONS_00000147 ID=TCONS_00000147|Name=TCONS_00000147|organism=Clytia hemisphaerica|type=CDS|length=26352bp|location=Sequence derived from alignment at sc0000001:224278..250162- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000147 vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2) HSP 1 Score: 381.333 bits (978), Expect = 1.805e-117 Identity = 218/559 (39.00%), Postives = 330/559 (59.03%), Query Frame = 1
Query: 238 VTIDLPSN---ERSWYVYILASLAIYVSGFICILIGRIF---WKVIKKWQFKLPEDEK---------DSRKPMEEYK-------AWYLQLKEFAVNLDTGKSVLGKCLVVTSFVLNMAAFISYLFISYEFPIEYCDKHDFAHGIHTQIWLLELCLYSFFAFHFLLRFIIATDKLAFWGLNIYTLVDILTIPIVIIQALQQKAWLGLRFLRVVYIRKLPDILIYLNLLETGKFIEIGTVVVNFMTVVLSSTGMIHLVENTGDFWAPHNYSNSNPLNYFECLYFMIVTFSTVGYGDYSCKTIMGRIFCMIFIICGLGVFASSIPAIFGFISSYTKYDRKFKSTPGKKHVIVTGHITDESVSSFIQDFLHPDRQCESNVTVVFLAPNYPSTLIEGIIQKHPSSVFFFNGTVYNLKDCHRVKMSEADAVIVLCDKKSHNPESEDAANITRVVSMKKYFSKYHIRCIVQLMRRDNKALLENTTHWRKGEGDTIVCIDELKYGFMAQCCYSPGFSTLLANLFVMRSSEKNKGKKSNTWRNEYVHGVSCEIYSTTLSDYFENMSFP 1848
VT+++P + +R W+ ++ +S+ + G IL+ R W V K E +K + KP++E + W +K++A + + +++ G+ LVV F L++ A + Y FI PIE C +F QI ++ FF +F LRFI A DKL FW L + ++VD T+P V + ++WLGLRFLR + + + +IL +LN+L+T I++ ++ F++ L++ G IHLVEN+GD W N+ N+ L Y+EC+Y ++VT STVGYGD KT +GR+F + FI+ GL +FAS +P I I + KY + + G+KH++V GHIT ESVS+F++DFLH DR + NV +VFL P+ +E + ++H + V F+ G+V N D RVK+ ADA ++L +K +P++EDA+NI RV+S+K Y K IR I Q+++ NKA L N W EGD +C+ ELK GF+AQ C + G ST+LANLF MRS K + +TW+ Y+ GVS E+Y+ LS F +SFP
Sbjct: 73 VTMEVPCDSRGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCGGKTKEAQKINNGSSQADGTLKPVDEKEEAVAAEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIY-FIDSSNPIESC--QNFYKDFTLQI---DMAFNVFFLLYFGLRFIAANDKLWFW-LEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPW--ENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRD-DVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPK--IRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIK---IEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFP 616 The following BLAST results are available for this feature:
BLAST of TCONS_00000147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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