TCONS_00000147-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000147-protein
Unique Name	TCONS_00000147-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	549

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000147-protein ID=TCONS_00000147-protein|Name=TCONS_00000147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp
MDSTLANCSVTIDLPSNERSWYVYILASLAIYVSGFICILIGRIFWKVIK
KWQFKLPEDEKDSRKPMEEYKAWYLQLKEFAVNLDTGKSVLGKCLVVTSF
VLNMAAFISYLFISYEFPIEYCDKHDFAHGIHTQIWLLELCLYSFFAFHF
LLRFIIATDKLAFWGLNIYTLVDILTIPIVIIQALQQKAWLGLRFLRVVY
IRKLPDILIYLNLLETGKFIEIGTVVVNFMTVVLSSTGMIHLVENTGDFW
APHNYSNSNPLNYFECLYFMIVTFSTVGYGDYSCKTIMGRIFCMIFIICG
LGVFASSIPAIFGFISSYTKYDRKFKSTPGKKHVIVTGHITDESVSSFIQ
DFLHPDRQCESNVTVVFLAPNYPSTLIEGIIQKHPSSVFFFNGTVYNLKD
CHRVKMSEADAVIVLCDKKSHNPESEDAANITRVVSMKKYFSKYHIRCIV
QLMRRDNKALLENTTHWRKGEGDTIVCIDELKYGFMAQCCYSPGFSTLLA
NLFVMRSSEKNKGKKSNTWRNEYVHGVSCEIYSTTLSDYFENMSFPKAA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000084	XLOC_000084	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000147	TCONS_00000147	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028325	VG_K_chnl
IPR013099	K_chnl_dom
IPR003929	K_chnl_BK_asu

Vocabulary: **Biological Process**
Term	Definition
GO:0006813	potassium ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005249	voltage-gated potassium channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0008076	voltage-gated potassium channel complex
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006813	potassium ion transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0008076	voltage-gated potassium channel complex
molecular_function	GO:0005249	voltage-gated potassium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028325	Voltage-gated potassium channel	PRINTS	PR00169	KCHANNEL	coord: 221..244 score: 16.49 coord: 289..315 score: 26.84 coord: 260..282 score: 34.16 coord: 137..160 score: 27.75
None	No IPR available	PRINTS	PR01449	BKCHANNELA	coord: 407..427 score: 38.1 coord: 540..549 score: 22.22 coord: 364..384 score: 28.57 coord: 488..503 score: 64.32
None	No IPR available	GENE3D	1.10.287.70		coord: 11..326 e-value: 1.1E-19 score: 69.5
None	No IPR available	GENE3D	3.40.50.720		coord: 327..466 e-value: 1.2E-11 score: 44.1
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 97..316
IPR013099	Potassium channel domain	PFAM	PF07885	Ion_trans_2	coord: 242..312 e-value: 1.0E-14 score: 54.2
IPR003929	Potassium channel, BK, alpha subunit	PFAM	PF03493	BK_channel_a	coord: 466..549 e-value: 8.0E-26 score: 90.0

Blast

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BLAST of TCONS_00000147-protein vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2)

HSP 1 Score: 382.104 bits (980), Expect = 5.400e-120
Identity = 218/559 (39.00%), Postives = 330/559 (59.03%), Query Frame = 0

Query:   10 VTIDLPSN---ERSWYVYILASLAIYVSGFICILIGRIF---WKVIKKWQFKLPEDEK---------DSRKPMEEYK-------AWYLQLKEFAVNLDTGKSVLGKCLVVTSFVLNMAAFISYLFISYEFPIEYCDKHDFAHGIHTQIWLLELCLYSFFAFHFLLRFIIATDKLAFWGLNIYTLVDILTIPIVIIQALQQKAWLGLRFLRVVYIRKLPDILIYLNLLETGKFIEIGTVVVNFMTVVLSSTGMIHLVENTGDFWAPHNYSNSNPLNYFECLYFMIVTFSTVGYGDYSCKTIMGRIFCMIFIICGLGVFASSIPAIFGFISSYTKYDRKFKSTPGKKHVIVTGHITDESVSSFIQDFLHPDRQCESNVTVVFLAPNYPSTLIEGIIQKHPSSVFFFNGTVYNLKDCHRVKMSEADAVIVLCDKKSHNPESEDAANITRVVSMKKYFSKYHIRCIVQLMRRDNKALLENTTHWRKGEGDTIVCIDELKYGFMAQCCYSPGFSTLLANLFVMRSSEKNKGKKSNTWRNEYVHGVSCEIYSTTLSDYFENMSFP 546
            VT+++P +   +R W+ ++ +S+  +  G   IL+ R     W V      K  E +K          + KP++E +        W   +K++A  + + +++ G+ LVV  F L++ A + Y FI    PIE C   +F      QI   ++    FF  +F LRFI A DKL FW L + ++VD  T+P V +     ++WLGLRFLR + + +  +IL +LN+L+T   I++  ++  F++  L++ G IHLVEN+GD W   N+ N+  L Y+EC+Y ++VT STVGYGD   KT +GR+F + FI+ GL +FAS +P I   I +  KY   + +  G+KH++V GHIT ESVS+F++DFLH DR  + NV +VFL    P+  +E + ++H + V F+ G+V N  D  RVK+  ADA ++L +K   +P++EDA+NI RV+S+K Y  K  IR I Q+++  NKA L N   W   EGD  +C+ ELK GF+AQ C + G ST+LANLF MRS  K    + +TW+  Y+ GVS E+Y+  LS  F  +SFP
Sbjct:   73 VTMEVPCDSRGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCGGKTKEAQKINNGSSQADGTLKPVDEKEEAVAAEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIY-FIDSSNPIESC--QNFYKDFTLQI---DMAFNVFFLLYFGLRFIAANDKLWFW-LEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPW--ENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRD-DVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPK--IRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIK---IEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFP 616

The following BLAST results are available for this feature:

BLAST of TCONS_00000147-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000147-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
KCMA1	5.400e-120	39.00	Calcium-activated potassium channel subunit alpha-...	[more]

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TCONS_00000147-protein (polypeptide) - C. hemisphaerica

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