TCONS_00000130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000130
Unique NameTCONS_00000130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000130 ID=TCONS_00000130|Name=TCONS_00000130|organism=Clytia hemisphaerica|type=transcript|length=1124bp
AAAAACGATATATATTCAGGTAGTGCAGAAAAACAACACGATTCTCAAAA
ATCAAGATGGCGCATCTAACCAATGATCCAAGTCATCAACAACGTTGGAT
TTGCATCTATCCAGCTTACTTAAACAGCAGAAGAACACAAGTTGAAGGTA
GAAAGtgaaaataataacaatgagCTCTTACGCAAGAAGAATGGCAATGC
TCAGCGCAAAAATCTTTGGAAATCTACCAAGGCCTGTATCTGAAAGATCA
CAAAAGGTAATTGATCATTTCAAAGCAGCTCCACTTGGTCCAGTTCATGC
CAACTACTACCCACCACTGAAGCAATATAATTCTTTGCTTCGAAAGTTAC
GTTTCCTTGGAATCTATCATGATGAACATATGGATTTTGTTGAAGAAATG
GCACACAAGAGAAAGCTTCGTGGAAAAGGACCTCCACCCAAAGgtcAAGG
CAAAAGATCCAAAAAGAAGTAAAGCTGACATATGTATGTATTTGCGAATG
GTTTGTGTGTGATTTTTACTCCACTTGAAGATATCTTTATCCACTGATGC
ACTTAGATATGTTGAAAGTTTTGGCATCCGAACAACATCTTACAGTATTC
CTTTTCAGAACTATTGTTTTTAATAGACGAAAACCCCAAACTCAATACTT
ATTACTGGAACATATCCAAATAATGATTTGCGTGTGATCTTTGAGAGAGA
TGAACATTAGATATATTTTTAACGCGGGCGCACGGAAGTAGAAACAAATT
TCGGAACTTTTCCAACTGTTTAATTTTTATCTCCGTAATAGGAAATCACT
AAAATCACTACCGGTTCTTTCATATTCTCTGAAAGtcctttgtttgaaaa
aaaaaatgcgaatttaaatttatgcaataagTTCTAAGATTTATTCAAGT
TAACTTTGACTTCCCTTCTTTGAATTTATTGGCCACGATGCTGCTATATT
ATGTAGTATGTAAGCATCTGATTTatcaaaaaatgtataattgCGCAAGC
TAAACTCAATTAGACTAGAAGATTTTATTCTGTTGGTTGATAATGAATGA
ATGAtatatttttagtattttttataCGTGAAGCTGTAGATAGAGAAAAT
ATTATTCCAACTTCGACATTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00000130-protein

>TCONS_00000130-protein ID=TCONS_00000130-protein|Name=TCONS_00000130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSSYARRMAMLSAKIFGNLPRPVSERSQKVIDHFKAAPLGPVHANYYPPL
KQYNSLLRKLRFLGIYHDEHMDFVEEMAHKRKLRGKGPPPKGQGKRSKKK
Run BLAST on NCBI

transcript from alignment at sc0000001:2711891..2719356+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000130 ID=TCONS_00000130|Name=TCONS_00000130|organism=Clytia hemisphaerica|type=transcript|length=7466bp|location=Sequence derived from alignment at sc0000001:2711891..2719356+ (Clytia hemisphaerica)
AAAAACGATATATATTCAGGTAGTGCAGAAAAACAACACGATTCTCAAAA
ATCAAGATGGCGCATCTAACCAATGATCCAAGTCATCAACAACGTTGGAT
TTGCATCTATCCAGCTTACTTAAACAGCAGAAGAACACAAGTTGAAGGTA
GAAAGGTATCTAAGTCTAAAGCTGTTGATAATCCTAAAGTTAATGAAATC
AAAGATGTTTTAACCTACCACAAATTCAATTTTGTTGTTGAGGAAACAAA
GCAATATCCTCGAGACAGTTTCAAAGATGCGTTTTGCAAGGGGCGAGTTC
GAGTTCAATTGAAAAATAGTGATGGTACACCATTTAATAAAGAATTTACA
AcaagaaaagaaatactttatATGCTGGGGGATATGATTCCAAAACTGAA
AGGAAGGCAAACTAAAGGGGCAACAGCAGGTGATTCAAATCAATCGTCTG
GTTCGAGCAGCAACAAGAAAGGAAAGAAGAAACGTTGATTATTTTACTTT
GTACTTGCTATAGGAAATATAGTTTATGACAACTTTTAGATATGAAATTT
TGATGTTGCAAATATGAAATGAACCTTTTGCTATAATCAATATATTATGT
catgtatataatatatatgTTGAATAAATTAAAGAAACACAAGCATCAAA
AACAATgatcagaaaaaaattggtgCATACTTATGATAATTACCATAACT
TTGTGTAATGCTGACACACCTTGAAGTCATGCATAGCCcacaaatgaatg
acctggctggtcattaaaaaatacaaagttaaattaaaacaaaaatggta
gagtagagctgcgagtagagctgcgtagttcatttgttttgaaattttgc
tgctttgattggtctgtcatttgatggctatgaaagtttccctccactga
ttcaagttacccaacttcacggtaccttgtctaattcagtcatagcaact
atctggtctgcaaagtaAATGGAGTAATANNNNNNNNNNNNNNNNNNNNN
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ttgaaattttgctgctttgattggtctgtcatttgatggctatgaaagtt
tccctccactgattcaagttacccaacttcacggtaccttgtctaattca
gtcatagcaactatctggtctgcaaagtaAATGGAGTAATTCTTTAAAAA
GCTTTCTCAGGTCAGAAGGTTCTGTTTATTTTCACAGTGTAAACAGGGTT
ATTTTAAAAACCATGGTATCCCAATTGGTGAATGACTATGGTGGCATTAA
ACCAAGATATATACAATATGCTTTACTTTGTCATTGTTTCAAAATACTGG
AGTTTATGATTTATTTGACATGTaatcctgattagcaaaaggtctaGAGA
ATGTCACCCTTCAAATgtctttaaacatttttaactGTTTAATGATGACC
GGGTTGAGGACAGTTGAGGATAAAaagcttggaaaatatttttttttaac
tggAAACATTCTCCTGTCTTTATTTAACATCCCCTGGCAGCAGCTATAAA
GTTTAAAAGCTTATGATTACATGTGCTGTGGATTGATTGTTAAGTTCAAA
TTTTTCATATATTAAATTTTCTTATagtgaaaataataacaatgagCTCT
TACGCAAGAAGAATGGCAATGCTCAGCGCAAAAATCTTTGGAAATCTACC
AAGGCCTGTATCTGAAAGGTAACAATTTTAAGATCTGAATTTTAGGCTGG
ACCTGGAATTTGTCGGTCGCttaggaaaaaaagttattttgacgATTTAT
GAAAGTTCTGTTTACAATTTCCCAAATGAAAACGAAAGAGCTAGAGCGAG
ATTAACACGATTGAGGTTTTGATtcggaagaaaaaaattgtttatcgAGT
TAGGATCGGTCAGATTACGAAGTAatccctgaatactaatgtatcaacta
ctaacgaacaaaacttgatttacaagtgtgaatatctaaccaaacgacgt
ttgataaacggtcaacttgattttctttatgatgaaccatataaGAGCAC
GAGTCTGCTAATGTCAcccattttcggttttgtcaacttttcaactttaa
ggatccagtgaaaaatctaggtgCATGCAATAATGATACCagctgatgtt
ttttatcagtCTTGATACTGGTAAGcttaaacagtcatttttttcacttt
acaaagtacacaattttttcagggcagcttttttcatcaaaatgtgaacg
gaaaatgaggtttttagcAAATTGTCTAAGTTCATTATTTAATAATCTAG
GCCAATCATGTCTGATcatacttaatttttctttttattaNNNNNNNNNN
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aggaataaaagtgaaattcaaaactttattttttccaaattttttcaccT
ATTTGGGTGACATTACCAGACTCATGCTCATAAATGAACTCATAGTCTGC
AGCTGggagaaattttcttttttttcccagccggtttccggaaacgctac
attttttattttcgccttagaGTGAATTTATTGACATTGATGTTTTATTA
TGTTCTTTGCATCAGATCACAAAAGGTAATTGATCATTTCAAAGCAGCTC
CACTTGGTCCAGTTCATGCCAACTACTACCCACCACTGAAGCAATATAAT
TCTTTGCTTCGAAAGTTACGTTTCCTTGGAATCTATCATGATGAACATAT
GGTTAGTACTTACCCAGCTTGtccacaacgttgtttcaacgttcttctaa
cgttatatggacgctgtgaacattagataaacgttgaaacaacgttctgt
gccagctgggtatctgaaaaattttgtttcttaataatttacaaaaaatc
acaaaacagttttttgatGTTAGAAAAGTAACTCTTCACTACTGCTACGC
AtatcattttgaatttgttgCGACGTATATGTCTCCTTTTCGAAATAAGT
ATTTCGACTCAAATTCtatcaatattttgattatttagGATTTTGTTGAA
GAAATGGCACACAAGAGAAAGCTTCGTGGAAAAGGACCTCCACCCAAAGG
TAACAATCATTGTACCAGACACTTTTTTAGATAGTTTTATCGTGCTTCTC
CTAAGTTTATTCTTTTAAGTGGATTGATTTTCACTAGCACAgaaaatttt
cgcgaatcagcctctTTTAGGTATTATTTCTTTCCTGACGGTTTTAGTAA
AAGAATTTGCAATAATTTTATTTCGCGAGTTTcgtgaatttttaaaattt
ttccgaaCATTAAATTCGTGAATTTTCGGAAAAACCCTCGAAACTGATTA
CATTAAGAAAATAGAGTCGATGTTGTAGGAATATTTCGACGATCTttatg
tcatcattttcaaccatATGAACATCGActctattttcttgttgtttttt
atttaaaaatccaaggaaatgtttatttttgggttatgcttctttttata
ctttttgaaattgtctggCACTGTTGGATTTTGATTACATTATGTAATTA
TGATtaacttttgtttattttattattattattaggtcAAGGCAAAAGAT
CCAAAAAGAAGTAAAGCTGACATATGTATGTATTTGCGAATGGTTTGTGT
GTGATTTTTACTCCACTTGAAGATATCTTTATCCACTGATGCACTTAGAT
ATGTTGAAAGTTTTGGCATCCGAACAACATCTTACAGTATTCCTTTTCAG
AACTATTGTTTTTAATAGACGAAAACCCCAAACTCAATACTTATTACTGG
AACATATCCAAATAATGATTTGCGTGTGATCTTTGAGAGAGATGAACATT
AGATATATTTTTAACGCGGGCGCACGGAAGTAGAAACAAATTTCGGAACT
TTTCCAACTGTTTAATTTTTATCTCCGTAATAGGAAATCACTAAAATCAC
TACCGGTTCTTTCATATTCTCTGAAAGtcctttgtttgaaaaaaaaaatg
cgaatttaaatttatgcaataagTTCTAAGATTTATTCAAGTTAACTTTG
ACTTCCCTTCTTTGAATTTATTGGCCACGATGCTGCTATATTATGTAGTA
TGTAAGCATCTGATTTatcaaaaaatgtataattgCGCAAGCTAAACTCA
ATTAGACTAGAAGATTTTATTCTGTTGGTTGATAATGAATGAATGAtata
tttttagtattttttataCGTGAAGCTGTAGATAGAGAAAATATTATTCC
AACTTCGACATTCAAG

Coding sequence (CDS) from alignment at sc0000001:2711891..2719356+

>TCONS_00000130 ID=TCONS_00000130|Name=TCONS_00000130|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000001:2711891..2719356+ (Clytia hemisphaerica)
atgagCTCTTACGCAAGAAGAATGGCAATGCTCAGCGCAAAAATCTTTGG
AAATCTACCAAGGCCTGTATCTGAAAGATCACAAAAGGTAATTGATCATT
TCAAAGCAGCTCCACTTGGTCCAGTTCATGCCAACTACTACCCACCACTG
AAGCAATATAATTCTTTGCTTCGAAAGTTACGTTTCCTTGGAATCTATCA
TGATGAACATATGGATTTTGTTGAAGAAATGGCACACAAGAGAAAGCTTC
GTGGAAAAGGACCTCCACCCAAAGgtcAAGGCAAAAGATCCAAAAAGAAG
TAAatgagCTCTTACGCAAGAAGAATGGCAATGCTCAGCGCAAAAATCTT
TGGAAATCTACCAAGGCCTGTATCTGAAAGATCACAAAAGGTAATTGATC
ATTTCAAAGCAGCTCCACTTGGTCCAGTTCATGCCAACTACTACCCACCA
CTGAAGCAATATAATTCTTTGCTTCGAAAGTTACGTTTCCTTGGAATCTA
TCATGATGAACATATGGATTTTGTTGAAGAAATGGCACACAAGAGAAAGC
TTCGTGGAAAAGGACCTCCACCCAAAGgtcAAGGCAAAAGATCCAAAAAG
AAGTAAatgagCTCTTACGCAAGAAGAATGGCAATGCTCAGCGCAAAAAT
CTTTGGAAATCTACCAAGGCCTGTATCTGAAAGATCACAAAAGGTAATTG
ATCATTTCAAAGCAGCTCCACTTGGTCCAGTTCATGCCAACTACTACCCA
CCACTGAAGCAATATAATTCTTTGCTTCGAAAGTTACGTTTCCTTGGAAT
CTATCATGATGAACATATGGATTTTGTTGAAGAAATGGCACACAAGAGAA
AGCTTCGTGGAAAAGGACCTCCACCCAAAGgtcAAGGCAAAAGATCCAAA
AAGAAGTAAatgagCTCTTACGCAAGAAGAATGGCAATGCTCAGCGCAAA
AATCTTTGGAAATCTACCAAGGCCTGTATCTGAAAGATCACAAAAGGTAA
TTGATCATTTCAAAGCAGCTCCACTTGGTCCAGTTCATGCCAACTACTAC
CCACCACTGAAGCAATATAATTCTTTGCTTCGAAAGTTACGTTTCCTTGG
AATCTATCATGATGAACATATGGATTTTGTTGAAGAAATGGCACACAAGA
GAAAGCTTCGTGGAAAAGGACCTCCACCCAAAGgtcAAGGCAAAAGATCC
AAAAAGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000072XLOC_000072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000130-exon-sc0000001-1491911889:2711891..2712045TCONS_00000130-exon-sc0000001-1491911889:2711891..2712045Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1510915933:2711891..2712045TCONS_00000130-exon-sc0000001-1510915933:2711891..2712045Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1575043694:2711891..2712045TCONS_00000130-exon-sc0000001-1575043694:2711891..2712045Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1491911889:2714968..2715058TCONS_00000130-exon-sc0000001-1491911889:2714968..2715058Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1510915933:2714968..2715058TCONS_00000130-exon-sc0000001-1510915933:2714968..2715058Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1575043694:2714968..2715058TCONS_00000130-exon-sc0000001-1575043694:2714968..2715058Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1491911889:2717706..2717841TCONS_00000130-exon-sc0000001-1491911889:2717706..2717841Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1510915933:2717706..2717841TCONS_00000130-exon-sc0000001-1510915933:2717706..2717841Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1575043694:2717706..2717841TCONS_00000130-exon-sc0000001-1575043694:2717706..2717841Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1491911889:2718129..2718189TCONS_00000130-exon-sc0000001-1491911889:2718129..2718189Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1510915933:2718129..2718189TCONS_00000130-exon-sc0000001-1510915933:2718129..2718189Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1575043694:2718129..2718189TCONS_00000130-exon-sc0000001-1575043694:2718129..2718189Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1491911889:2718676..2719356TCONS_00000130-exon-sc0000001-1491911889:2718676..2719356Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1510915933:2718676..2719356TCONS_00000130-exon-sc0000001-1510915933:2718676..2719356Clytia hemisphaericaexon
TCONS_00000130-exon-sc0000001-1575043694:2718676..2719356TCONS_00000130-exon-sc0000001-1575043694:2718676..2719356Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000130-proteinTCONS_00000130-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2711891..2719356 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.709	40.0513	25.8857	24.3263	27.0592	18.2822	28.1973	28.1322	27.6054	24.3602	22.7785	20.3186	14.6182	12.0745	20.9564	19.563	37.8942	35.1396	6.88325	10.8258	30.5087	28.9884	42.7351	40.292	13.8611	19.7106	25.2786	18.7392	27.8405	25.9044
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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