Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000130-protein ID=TCONS_00000130-protein|Name=TCONS_00000130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR013219 Ribosomal_S27/S33_mit
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
M S S Y A R R M A M L S A K I F G N L P R P V S E R S Q K V I D H F K A A P L G P V H A N Y Y P P L K Q Y N S L L R K L R F L G I Y H D E H M D F V E E M A H K R K L R G K G P P P K G Q G K R S K K K 10 20 30 40 50 60 70 80 90 100 Expect = 2.2E-20 / Score = 72.5 Score = Sequence PF08293 mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
IPR013219 Ribosomal protein S27/S33, mitochondrial PFAM PF08293 MRP-S33 coord: 3..91 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 77..100
Blast
BLAST of TCONS_00000130-protein vs. Swiss-Prot (Human)
Match:
RT33 (28S ribosomal protein S33, mitochondrial OS=Homo sapiens GN=MRPS33 PE=1 SV=1)
HSP 1 Score: 75.8702 bits (185), Expect = 1.766e-19
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0
Query: 1 MSSYARRMAMLSAKIFGNLPRPVSERSQKVIDHFKAAPLGPVHANY--YPPLKQYNSLLRKLRFLGIYHDEHMDFVEEMAHKRKLR 84
+S YA RM+ LSA++FG + RP + +S KV+ F PL Y YP Y L++ LRFLG+Y DEH DF++E +KLR
Sbjct: 4 LSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLR 89
The following BLAST results are available for this feature:
BLAST of TCONS_00000130-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M S S Y A R R M A M L S A K I F G N L P R P V S E R S Q K V I D H F K A A P L G P V H A N Y Y P P L K Q Y N S L L R K L R F L G I Y H D E H M D F V E E M A H K R K L R G K G P P P K G Q G K R S K K K 10 20 30 40 50 60 70 80 90 100 Expect = 1.77e-19 / Id = 44.19 Sequence RT33
Match Name E-value Identity Description
RT33 1.766e-19 44.19 28S ribosomal protein S33, mitochondrial OS=Homo s... [more]
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