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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000120 ID=TCONS_00000120|Name=TCONS_00000120|organism=Clytia hemisphaerica|type=transcript|length=3412bpRun BLAST on NCBI protein sequence of TCONS_00000120-protein >TCONS_00000120-protein ID=TCONS_00000120-protein|Name=TCONS_00000120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp YIRIIVKRSKGLGSSLLQNLIMVDHGGGLVEDLEKKTGLTADQIVPLITLRun BLAST on NCBI transcript from alignment at sc0000001:2340620..2360221+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000120 ID=TCONS_00000120|Name=TCONS_00000120|organism=Clytia hemisphaerica|type=transcript|length=19602bp|location=Sequence derived from alignment at sc0000001:2340620..2360221+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:2340620..2360221+ >TCONS_00000120 ID=TCONS_00000120|Name=TCONS_00000120|organism=Clytia hemisphaerica|type=CDS|length=24336bp|location=Sequence derived from alignment at sc0000001:2340620..2360221+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000120 vs. Swiss-Prot (Human)
Match: MBOA2 (Lysophospholipid acyltransferase 2 OS=Homo sapiens GN=MBOAT2 PE=2 SV=2) HSP 1 Score: 239.58 bits (610), Expect = 4.987e-68 Identity = 138/435 (31.72%), Postives = 220/435 (50.57%), Query Frame = 2
Query: 92 EDLEKKTGLTADQIVPLITLFFAFWVGHIFRIWLSPQRISSQKRHFISMALGIIMLSIVFGEQAFHLLYSCLISYTLMRFVDTSVVHVWVMGSAMLYLSLIHFKRMMLQD-DNYVVDISGPLMLATIKITYVGCGIHD---KYHPRTTSDDARIILKKFPSPLEYLGYIFNFSSVFTGPPPEYQDYMDFIDGKQYDKYKDELKGKQ--------PSPMLVSIQKFILGYMAIGMYGFVSSIFKPDFYKTPELYESSFW-FKVMFAEIMVYHHKFKYYGAFGLGESICNASGLGFSGVDEDRNPTWDKLKTLRPLQIEYATNIRGYVDCWNLTVNVWLKKCVYSRLKVIPFLGTWVFSALWHGFYSGYYTFFIPLGFALFLTRKVRRTIRPYFLSSPSLKLFYDVITWFVTRLLLNFYAVGFATLNYAITFKFWNS 1357
+ L L DQ+ ++ FA FR +L + SS RH ++ LG+ + FG A H L ISY +M + +H + A+ YL++ R+ + D Y D SGP+M+ T KIT + C IHD + TS + +++ PS LEYL Y NF + GP Y+DY+ FI+G+ Y + GK+ PSP +QK ++ +++ + + + ++ ++ W K+++ I + + KYY A+ L ++I NA+G GF G DE+ WD + LR QIE +T+ + ++D WN+ +WLK+ Y R P + T++ SA+WHG Y GYY F+ R +R R YF+ LKLFYDVITW VT++ +++ V F L+ + F++S
Sbjct: 13 QPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSFIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMIIIGVENMHNYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGPMMIITQKITSLACEIHDGMFRKDEELTSSQRDLAVRRMPSLLEYLSYNCNFMGILAGPLCSYKDYITFIEGRSYHITQSGENGKEETQYERTEPSPNTAVVQKLLVCGLSLLFHLTICTTLPVEYNIDEHFQATASWPTKIIYLYISLLAARPKYYFAWTLADAINNAAGFGFRGYDENGAARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERTSFSPTIQTFILSAIWHGVYPGYYLTFLTGVLMTLAARAMRNNFRHYFIEPSQLKLFYDVITWIVTQVAISYTVVPFVLLSIKPSLTFYSS 447 The following BLAST results are available for this feature:
BLAST of TCONS_00000120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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