|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000105 ID=TCONS_00000105|Name=TCONS_00000105|organism=Clytia hemisphaerica|type=transcript|length=1566bpRun BLAST on NCBI protein sequence of TCONS_00000105-protein >TCONS_00000105-protein ID=TCONS_00000105-protein|Name=TCONS_00000105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp MATAPNYLMTDELLRKPRKKRCGRQVPLSPFPVPIQTITRQQPTNDRWYYRun BLAST on NCBI transcript from alignment at sc0000001:1947941..1987921+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000105 ID=TCONS_00000105|Name=TCONS_00000105|organism=Clytia hemisphaerica|type=transcript|length=39981bp|location=Sequence derived from alignment at sc0000001:1947941..1987921+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1947941..1987921+ >TCONS_00000105 ID=TCONS_00000105|Name=TCONS_00000105|organism=Clytia hemisphaerica|type=CDS|length=17598bp|location=Sequence derived from alignment at sc0000001:1947941..1987921+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000105 vs. Swiss-Prot (Human)
Match: SEN2 (tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens GN=TSEN2 PE=1 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 1.224e-45 Identity = 81/224 (36.16%), Postives = 132/224 (58.93%), Query Frame = 2
Query: 608 EDQLSATGCFENEDDGETVDCTLHENEKETLKRKTESQDDWSVGKMAKI--EDQYKLFEYLQLTFEEAFFLSYGLGCLCVEDHNQIGMNVGEMWRTFSCRQKDFVQRYTAYHHFRSKGWVVRFSNLFGADFVLYQSGMPFYHASYSVFVRYMDEKDGGLEEKSFSWKDLSCICRVNEKVAKEVLICYVVKPKDVDESELKSPGVLKKLRVVEMVIRRWLPERHR 1273
ED G D G + L E + + + + ++ V + I + Y++FEYLQL+ EEAFFL Y LGCL + + + + + ++W+ F+ Q F Y AYH+FRSKGWV + +G D +LY+ G PFYHASYSV + +D+ G + SWK L+ + RV+ V+KE+++CY++KP + + E++SP +K+++V E+++ RW+ R R
Sbjct: 237 EDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEEAFFLVYALGCLSIY-YEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRER 459 The following BLAST results are available for this feature:
BLAST of TCONS_00000105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.