TCONS_00000105-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000105-protein
Unique NameTCONS_00000105-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000105-protein ID=TCONS_00000105-protein|Name=TCONS_00000105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MATAPNYLMTDELLRKPRKKRCGRQVPLSPFPVPIQTITRQQPTNDRWYY
FFGLLKSDHVAVYRKGDLTYLYQMGFFGKGILSKSQPQYEKYEEESFLLD
HAKRQSRSEGRSKAQLESKQAFLQERLRQHENWSWMKEKKDDIESTRNTL
KVTSDNSTELSSTINSVDLRVPDESYGTDGEDELSNEEEDQLSATGCFEN
EDDGETVDCTLHENEKETLKRKTESQDDWSVGKMAKIEDQYKLFEYLQLT
FEEAFFLSYGLGCLCVEDHNQIGMNVGEMWRTFSCRQKDFVQRYTAYHHF
RSKGWVVRFSNLFGADFVLYQSGMPFYHASYSVFVRYMDEKDGGLEEKSF
SWKDLSCICRVNEKVAKEVLICYVVKPKDVDESELKSPGVLKKLRVVEMV
IRRWLPERHRELNKEKIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000053XLOC_000053Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000105TCONS_00000105Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR006676tRNA_splic
IPR006678tRNA_intron_Endonuc_N
IPR016589tRNA_splic_SEN2
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: Cellular Component
TermDefinition
GO:0000214tRNA-intron endonuclease complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0000213 tRNA-intron endonuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 290..381
e-value: 2.4E-17
score: 62.7
IPR006677tRNA intron endonuclease, catalytic domain-likeSUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 289..382
IPR006676tRNA-splicing endonucleaseTIGRFAMTIGR00324TIGR00324coord: 233..376
e-value: 1.5E-17
score: 62.0
NoneNo IPR availableGENE3D3.40.1170.20coord: 51..282
e-value: 4.5E-25
score: 87.6
NoneNo IPR availableGENE3D3.40.1350.10coord: 289..388
e-value: 2.1E-27
score: 94.3
IPR006678tRNA intron endonuclease, N-terminalPFAMPF02778tRNA_int_endo_Ncoord: 242..280
e-value: 6.0E-5
score: 22.5
IPR016589tRNA-splicing endonuclease, SEN2 subunitPIRSFPIRSF011789tRNA_endo_SEN2coord: 14..411
e-value: 7.0E-72
score: 240.5

Blast
[Close]
BLAST of TCONS_00000105-protein vs. Swiss-Prot (Human)
Match: SEN2 (tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens GN=TSEN2 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.815e-47
Identity = 81/224 (36.16%), Postives = 132/224 (58.93%), Query Frame = 0 
Query:  189 EDQLSATGCFENEDDGETVDCTLHENEKETLKRKTESQDDWSVGKMAKI--EDQYKLFEYLQLTFEEAFFLSYGLGCLCVEDHNQIGMNVGEMWRTFSCRQKDFVQRYTAYHHFRSKGWVVRFSNLFGADFVLYQSGMPFYHASYSVFVRYMDEKDGGLEEKSFSWKDLSCICRVNEKVAKEVLICYVVKPKDVDESELKSPGVLKKLRVVEMVIRRWLPERHR 410
            ED     G     D G   +  L E  +  +  +  + ++  V +   I   + Y++FEYLQL+ EEAFFL Y LGCL +  + +  + + ++W+ F+  Q  F   Y AYH+FRSKGWV +    +G D +LY+ G PFYHASYSV +  +D+   G   +  SWK L+ + RV+  V+KE+++CY++KP  + + E++SP  +K+++V E+++ RW+  R R
Sbjct:  237 EDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEEAFFLVYALGCLSIY-YEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRER 459
The following BLAST results are available for this feature:
BLAST of TCONS_00000105-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEN22.815e-4736.16tRNA-splicing endonuclease subunit Sen2 OS=Homo sa... [more]
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