TCONS_00000076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000076
Unique NameTCONS_00000076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000076 ID=TCONS_00000076|Name=TCONS_00000076|organism=Clytia hemisphaerica|type=transcript|length=2458bp
TTTaggaaaatcttaattttgtgTTACCATGCAGAAGGAAGATTACATCT
TCACATCGACCGGTTTTCGGAAGTTGTCACCCAGTCCGAAAGGTTTACTT
CATCGAAGAGTGCGATCGGCCAACTCAGTGTTAttgagaaagaaagagaa
aagtgAAGAAACTGTCATCAAGTCTCATTCCATGGAAAAATATGTCGATG
AAAGGAGAGGAAAAAGCACAAAGACTATATTCGATGTGGGTGCAACAAAC
AGTATCAAGAAGCGACCTTCCACAGCTCAACAGTCTTTGAGACAAAAAAT
TCATCCAGCACCACCAGGATACGTCTACACTATGAATAATCTAGAATGTG
CTCCACCACAGCTCTATCTCAACGATAAAGTTCGTATTTACGCTAAGGAA
CACAGGAGAGCACAATCTGCGTTGGAGAACACAAGAGATATTCCCAAGGC
TTCCTCCTTCAACAGTGCTGGTAACAGAAGAAGGGTCCAATCAGCTGATG
TGGCATACCGTTTCGGTAAACGGATTCATCTCCCGCAAAATTATGCTGAA
AATGAGCATCTAACACACGAAGGGTTAACCATGGGTCAGAAGCAGTATAT
TTGGGGTATCGCTCGGTGCTACTCAACACAGAATCTCAAAGAGCTCAATG
ATCGGCGAATGAAGATTATTGTAGACCAAGAGCTAGACAAACGATTGAAA
ACTCACAGCATCTCcgataaagtgaaaaaaaatcttatcaaaGAATACCA
TGATACAATTCAATACATCGACTACAAATCGAAGAACATCCACCCGAAGC
GCCCAACAACCGCCAAAAAACAAACGCGGAGATCTCCATCATACGAAGAA
GAGAGTGACTCCGTACAAGGGGACGAGAATAGTTTTGATTGTGTGATTAT
CGTTAGAACACCTCCAACGTCACCACTAGCACGAAGAAAGATTCTGTCAG
AAAGATCATCCTCGACATTGATGTCACCGAGTGTTGAATCTTGATGGATA
CGAACATCACATGGGTTTGAAAACGATCAACAAGAACACGAAACGAACAA
TTCGTTTTCACCAATACGACCACCAAGGGAAGAAGATCAAACATCCCAAG
AAACAAAAAGTCATGACTATTAGTTATACTCTCAAAcaacaatctgaaaa
aaataacaatacaAATACGAACAATGTCACTCGATCTGAGCATAATTACA
GCATGCAGTTATTACCGAAACAGCGTGGTGCTggcaaattgaccaaaaaa
acaAGCGAACATTATATTATTTGTGAGATTGGTAAAATATTGTTACGCGA
AGCTGAGAAAGTTAAATCCtttgaaaaacaattaggtGAAAGTTACAACA
AATTTGATTTGGACAGTTTGCAATCATTTCATGAATATGCTGGATATTTA
GAACTTGTTAATCCTATTTGCAGTCCTGATTCTGTGGATACTGCTGATAA
ACTTGTTTTGAATCTGGGAATCTAAATCATCGATGTCATATTTTGATAAT
GTCTTTGGCAATCGAATTATGGAGAATGTGAAGAGATTTTGCAAGAGATT
ATGGATTGCGTTGATATAAGCTCGTTTTATTGGACCAAGCTCGTTCAAGG
CTTTATTTACGCTACTGAttgaataccctggtgttgacTAATGAGAACTT
CTTGAAGGTCGAATAATACGGAGGAAACGAGGTTGTTATTGCCTATTGGG
CATTTAATTCCATTGAATACTTTCAAATATCTATCTATGTTCTTTTCGTT
CAatgaaaattaagaataatgatATTTCGAAACCACATTGAATGGATGGA
GTTACGTAACCTTTGTTTATTGCTTTGCAGACATCTCATCATGACATTTT
TGGGACTCTCAACTTGGTACTATTTTATACCAAGATAATCTATGGTTGTT
TTCATCTGATTATATTTAagggaatttatttttttgaggaCTCATTATGG
AGAGCAGCTAAAGTcctaaaagttttcaaatttttattttggcgagagCT
AGTTCTATCCCAAATTAGTTTCCTTAAGATTTTATATGGCAAGATAAGTT
ATTCATCACCAACCAATTTAGATGAATTCATAAACCGGTATTACAGAAAT
ATTTCGAGGAGTCTTATGCCATACTCCAATAATttacctactctcgggta
cctaatagccgttccccccgctaattaatttttcgaaagttttccactca
ggaaattcttattccaacaccctccgcttattaatttttgagaaattctc
cACCCAACCCGCTCGTTCcaaaccccccgcttattataGGTACCCGAGAG
AGTACAATGTTATTGAATAGAGAAAATATTGTAAATAGGGTTATGAACAT
CAAACATGAATTTAGTAATTGATTAAATTATAATAGAACTAAGTGAGAAA
GACACCTCCAAACAGTTTGATGAAACTGTTTCTCGTTTCATTTTTCTACG
TTTAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00000076-protein

>TCONS_00000076-protein ID=TCONS_00000076-protein|Name=TCONS_00000076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MQKEDYIFTSTGFRKLSPSPKGLLHRRVRSANSVLLRKKEKSEETVIKSH
SMEKYVDERRGKSTKTIFDVGATNSIKKRPSTAQQSLRQKIHPAPPGYVY
TMNNLECAPPQLYLNDKVRIYAKEHRRAQSALENTRDIPKASSFNSAGNR
RRVQSADVAYRFGKRIHLPQNYAENEHLTHEGLTMGQKQYIWGIARCYST
QNLKELNDRRMKIIVDQELDKRLKTHSISDKVKKNLIKEYHDTIQYIDYK
SKNIHPKRPTTAKKQTRRSPSYEEESDSVQGDENSFDCVIIVRTPPTSPL
ARRKILSERSSSTLMSPSVES
Run BLAST on NCBI

transcript from alignment at sc0000001:1673532..1682564+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000076 ID=TCONS_00000076|Name=TCONS_00000076|organism=Clytia hemisphaerica|type=transcript|length=9033bp|location=Sequence derived from alignment at sc0000001:1673532..1682564+ (Clytia hemisphaerica)
TTTaggaaaatcttaattttgtgTTACCATGCAGAAGGAAGATTACATCT
TCACATCGACCGGTTTTCGGAAGTTGTCACCCAGTCCGAAAGGTTTACTT
CATCGAAGAGTGCGATCGGCCAACTCAGTGTTAttgagaaagaaagagaa
aagtgAAGAAACTGTCATCAAGTCTCATTCCATGGAAAAAGTATTCAACT
TTATTTTTGACACTTGTAACAGTAACCCGATGTTATGGATAATTCCATCT
AGAGAAAAGGGAGTTTTATGAGAGCTAAATAAACggaacaataaaatatt
atcCTTTCAATCGGTGGGGACTTTGAATTCtataatttaaaatcaaaaga
tCCATAAGACAAGATGGCAATTCAGCCCAAAAAACATAGTCTTATGATTG
AGGATGTATTTAACATTTCGTTCTTTTTCAGTATGTCGATGAAAGGAGAG
GAAAAAGGTAAGACAATATACCCTTAGGTTCGAAATAAACGGGTGGGGTT
CGAAAACCCCAAGAATACAATTAGCTGATGATTTGTAAAAGATGAAACTG
ACAGTACTAAATTGATTCTTGTCtacttttttcttaaaatcgtatgaacc
taagagtacatgcGGCCTCTTTTTACTATGTACCACAGCTTAATTCAACA
TTCTTAAATTGTTTCTTGCAGTATCCCTTCTTATagtgaaaagtgaattt
tcccCCCGTTTACAGATTATATTCAAGATCGATATCACGATCCTCACGGT
AAATATcgcaaagaaaatatttctcgaaacttcaaattttcatcgaaaac
gCGAGCTTATCGATGAATAAAAGAGTAGAGCGTCGTAgttttttttaagg
aattttgATGGAATTGAAATTTGATACAGAAAACGAGACCTAAATAACAA
AATGTTGAATTAGAGAACATCTTCAAAAATATTCTCTATTCCTGTAATCT
ATATTTTACATATTCAGCACAAAGACTATATTCGATGTGGGTGCAACAAA
CAGTATCAAGAAGCGACCTTCCACAGCTCAACAGTCTTTGAGACAAAAAA
TTCATCCAGGTATTGTTTTAAGCTTTACTCCATCTTACCACATCCCCTTG
GAatcattttgtttatttatcataattgaaaatgaatttatCATGGTGTA
CTggccaatgaagtataagcccgaagggctagaagtcaatctccttggta
ggatttgaagccaacaaatcctaccaaagttgcgcggccttgNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNttgaaactaaaatttaccgctaaatttcgaaaaaa
atatcaatcgtaaacaaaggaattgctagattcaatctgtcgtcaaaaat
gcggcacattttttaaggcttcactttttcctgcctgagaaaggttagag
attgaactctagcttcgggctttaaactcaatggtatttgcaatacacgt
tttttataagagacgACTATTTTCggtggtcaaaatattaagaacaagtt
tagaacGTTTTTAAGGCGAATTAAAACTCGAGAAATTAATGATACGCAAt
ggtttaaaaattttaaattcttcaATCTAAACCTCATTGAACTATACCAC
ATTGAAATTCCAGCATGGGTTCCTGTTTATGATCCAATTTTAATCTTAAG
CACGTGTTGATAcggatttttaattttctgtaAATAAACGTTTGTTCCAT
AGCACCACCAGGATACGTCTACACTATGAATAATCTAGAATGTGCTCCAC
CACAGCTCTATCTCAACGATAAAGTTCGTATTTACGCTAAGGAACACAGG
AGAGCACAATCTGCGTTGGAGAACACAAGAGATATTCCCAAGGCTTCCTC
CTTCAACAGTGCTGGTAACAGAAGAAGGGTCCAATCAGCTGATGTGGCAT
ACCGTTTCGGTAAACGGATTCATCTCCCGCAAAATTATGCTGAAAATGAG
CATCTAACACACGAAGGGTTAACCATGGGTCAGAAGCAGTATATTTGGGG
TATCGCTCGGTGCTACTCAACACAGAATCTCAAAGAGCTCAATGATCGGC
GAATGAAGATTATTGTAGACCAAGAGCTAGACAAACGATTGAAAACTCAC
AGCATCTCcgataaagtgaaaaaaaatcttatcaaaGAATACCATGATAC
AATTCAATACATCGACTACAAATCGGTAAGCCGTATATGACCAAAGACAT
TATAAAAAATCCTGGTGTGGTAATGTATTGTTATAGGTTTATTGTCAAAT
TTTCCTCTGTTGTAAATAAAAGTTAAATTGCggttttcatattttttgaa
cACATTTCCGACCCTTGAGAATAGTTCATGTTCTAGTTACCATGATgtgc
ttacaaaaaaaaataggcTTAAAACAAATCCATTAACGTATATAAGCTCT
AATTGTTAACAATAGAAAGGAACAAAGGCCTTCCAGACCGGAGTTTTTAT
AATGGCTATGATCTCGCAGATATCTTTACACGTCAGATTGGCTAACTGCT
CACAGATCTCCCGTCGAAGTGTGTCCAGTGTTGAAGTCGACAAGCCGACA
ATGTTGTTTTCAAATTACCTCAaattttcgaacgtttgaaTACCAAACAT
TTGAATCGCGATGTTTTcttcaagatttgaaaacagcATGGTGAACGccc
cttttcgaccgtagtcgctcGGTCAGGCACGTGTCAAGACGTGTcgcttt
attatttaatttaccaccctaaactcgatccgatccttttttacactttt
tctattgtctttaggcgcgaaaaaagactgggacggtttagggtggtaaa
acggataAAAAACGCCCTCGctgcaattggcggctacggtcgaaaaggtg
tatttgttTTCATCCGTAACTTAAATTCAGCTACATTCAGGGTGACTCAA
GTGACTTTTTATCATGATTATTAAAACATCTTATTCTTTCTTATTCTTTC
TTTATAATTTCTAGAAGAACATCCACCCGAAGCGCCCAACAACCGCCAAA
AAACAAACGCGGAGATCTCCATCATACGAAGAAGAGAGTGACTCCGTACA
AGGGGACGAGAATAGTTTTGATTGTGTGATTATCGTTAGAACACCTCCAA
CGTCACCACTAGCACGAAGAAAGATTCTGTCAGAAAGATCATCCTCGACA
TTGATGTCACCGAGTGTTGAATCTTGATGGATACGGTAAGTTGTTTAGTG
TTCGCCAGAGAGAGCGAATTGTATTTATTACGagctgtacacgttttttt
aacaaaaacatcaaatttttttgatgccttcggatgttcttaacttttgg
agttttaagTCTTAAATGCTCTTAAAGATTTTATCTTATGTTGATATAAG
caagaaaatgttttgctttcccttattctgaccaatcttgctcaacattt
gtgtcaattcaatgtgaaaaagcttgtgcattaaaattgatgagtaagca
aacgatatcactcttatttaaaaacaaaaccttaatatgttcttattttg
gaCTATTTTCATAAGAAGTTGGGTCTGCGAAACCTTAAAAACGTTCTTTA
cttgttcttatattttttccttatatagtctgttcttataaaaaaggtgt
attaaccAGAGGAGGATAGGGCTAAAGCATGTCTCAAAATAGTCTGCAGC
GGAGAAAAAAAAGGCTAAAACTTCTGCTAATAGAAATAAAACCTAAAGCC
GGTTCTgtgctcgttggaaagatattcaggaatgagaaattattaaaaag
aaaaacaaaacatttggagaattatttatttattccaACTTTTGATGATA
TTAAAGAAGATGAAAGATGACAGTTGTGGTGACAGTTTTACTTTTAAAAG
TTACCATAGTAACCAATGCTGAATGTGTGCTATCAAATTTTACAGAACGA
TTCTGTAGAATATTAAATGAAGCATTTTTTCCCACGATTTGTTTACAAGT
AGTTTTTGAAAGCAGCTTCTTGTCTTGATTGATTTAATAATTGATTTGCA
TTATAGCAAGAAAACAGGTGTTTTGTGTCTTAGTTTTTCGAATTactaaa
tcaaaaaattcatttaacATTAAGCAGAAACCAAAGCTTATCAGATATTA
ATTTGCATGTTCGATTTATGTATtcgaatgaaaaattattttcgaaaaga
aaatttctCCACCGGTATGAGGTCGCAAACTGGCTTAAGTTTTAGTATTG
AattattcaatgttttgatttttttcgttttctcaATCTATGCTCTTCTC
TGAATAGATTCATCttaagttttgcttttctttcatctttcaaattctct
gtGACCCTTTACTACTACGAAACTTTTTAATATGATAAAGCTAGACGCAG
CTTTCATAGAAATGTTATGTATATCACACTTGTGAATAATAAAAGAAAGA
TATATTCTTATAATAAGTAACATTGTGAATACTTCTTCCTTCGATCaatc
aaaaatatcaagaatggTGAATTTGATTCATCTCTCAAGTAGAAGAACTA
GCTCAGCATTTTCCATATTTTTGGTCAATATTCTCTCGTTTTATTATTAT
CGACTGATCTTTTGCTTGGGGCTGGATCCTTGATTCTCAAGCTGTGAAAC
TGAGAAAGACCGACATCTCTTTATAGTAACAGAAATTTTCTTAATACAAA
TTTCTTATTGTGGGTTCGGTGACTCTCACTTCAAGAATTTTTCGATCATT
TTGTGCTGCCATAAGCAACAACGTGTCAATCCaaggtaacattcaaattc
tttcGCTTGATAATCTTTGTCAAGTCATTATTATGTTTTAAATGATTGGA
TtattatacacccccttctcacagacccggtaggattcttTCAGCTAGCG
AggataaaaataacagactgaaGCTCAATGGGGAAtaatattcccatatt
tttaatGGCTGGCgatttaattcttttgttttcaaaaaatattttgcaat
gaggattggtttaattgattattttcagtggggacaaaaagtggagtata
attttccaccgcgcggggacgatattttggccaatttttccagtgggaag
ggctcccagtgggtttgtgagaaggggttgttATTATGATTTCATCGGAT
GGAGTCGCATTTCTTGTGTAGTGTAGGTCAAGTAAGCAACGTGTTCATTT
TGGATAACTGTTTACTTAGTTACTATTTTTTATTCGATGCGCTTCTTTGA
TAATAttgagaccatgttcagacatgtgaacgtcaaaattcgaaacgtta
AAAAAGAAGGGTGAACATGGTCTGAAAGACATCGTCACCAAGAAACTGTC
ATAAACGATGCTCTACTTTTCGATACGCTTTCTTTTTCGATGATAATCGA
ATTCGAGAGCGTCAACTAACTGTATAATGTTTTCTCGTTCTTCTCTTTTG
AAGAATTTCGCTGGGAAATGAACCCACTTTATTTCCCATCCTAAAAGGAG
TGACCCgtgtgttttccaaacaaaatttctaaatgcgAGGCAactttaag
gcttcactttttcttgcttgagcaaggttaaagattcctctctagctcct
ccggggcttcaaactcaatggttcAACCCTCGCCCACATGAGACAATGGG
TTTTAAAGGTTTTACAGGTTTTAAATCTACACTCATTCAAAgcaagagat
tttcaaattttgttgctTGAGTACTCAGCTCTTttaagacaggggtgttt
attttTTCGAAAGCTCTCTTTGTTTTCCCAGTTAGGTTGCGAACAtcaga
taaacgttgaaacaaccttGTGTACCATCTGGTGGGTTgtctttgtaaaa
gatttttgaagtcttttgaaattaaaaaaaaaatccttagCAGCACGAGT
AGCTTGCTCGAGGCTATAAAATCCTAATTCTGTACAGTGGGAAACTCATG
AGTCATCTTGTAAAGTGCTGACCACGagaaaaaattcgtaaaataagTAA
AGTTACATcaccattttttttgcattgagTGTGCTTTATAATCATCCCTG
CATCACATGACATAACAAACCATCTCATTTCCATGGTAATCGTACAGGTG
TTGCATACATAATTGATTACAAAACAAGCTTGTTGTTCACTTCATCCTCT
CGTGTTTTACATCTCCGTCATCAATTATTCACACATTCTCAAATCCCAAT
catcaatacacgttttttataagaacatactatattagaacagaagtttt
aaaagaagtttccaaaatattaagaacaagtttataGCTTTTCAGAATCT
AAAAATCGCcctatttcttaagaaattggacaaaaatagtgaaaataaga
acatcttattaagaatatttttagaatttaaacttaaaaaagttcagaac
attcgaaggcttcaaagattttagatgttcttatgaaaaacctGTAGGGC
TTATTCATGGTATACTGAATGTGCTATTTTGCGTGGCTTTTCCCATCGCT
CCCTTTTTGTCTCACAACAATGACGTGTGGTTTTTCTGTGGGATTGCCAC
TTTTAAGGTGTAttaatagtgtaggttttaagatGTCACTTGATTTTAAt
gtacatttttgaaaatatttagatcTAATTGTAGTATtagtaactttgca
gtgaatcaATATTCAAATTTGACACCAGAaggactattttataaaaccat
tttgtaggtttatCGGGTAAATAGCTCGGGGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggtact
acccttgtcgaccgacgggggtgctccgctgaggttcgaaaaatggaccc
tacgtgggactcgaaatttgcgaaaaagtgaccttgaaaaaaattccgaa
attttctcaaattttctactttttccccaaattttccaaaaaaaggcatc
CTACGATAGactgatttttctgttttggtgtttttgccaccctacctggg
actcgtggaggttaaaaaaggtaccctgaccagcggagctaaaattgcat
ttttttcaCGAAGCAAGAAAAGTTTTCTTAGCAGCTTTTACAAAATACCA
TACCCGTGGAAGAAATTCATAGGTAGCCTAGACTCACCCGAAGAAGTTTC
AGCCCTTACTGTTTTCTCTATCAGGATATaggggtaccttttttgttgta
ggttttaaggggtatccactggtatgcttctccttttctttatttttaac
ttcttttttttttaattctttttccaGAACATCACATGGGTTTGAAAACG
ATCAACAAGAACACGAAACGAACAATTCGTTTTCACCAATACGACCACCA
AGGGAAGAAGATCAAACATCCCAAGAAACAAAAAGTCATGACTATTAGTT
ATACTCTCAAAcaacaatctgaaaaaaataacaatacaAATACGAACAAT
GTCACTCGATCTGAGCATAATTACAGCATGCAGTTATTACCGAAACAGCG
TGGTGCTggcaaattgaccaaaaaaacaAGCGAACATTATATTATTTGTG
AGATTGGTAAAATATTGTTACGCGAAGCTGAGAAAGTTAAATCCtttgaa
aaacaattaggtGAAAGTTACAACAAATTTGATTTGGACAGTTTGCAATC
ATTTCATGAATATGCTGGATATTTAGAACTTGTTAATCCTATTTGCAGTC
CTGATTCTGTGGATACTGCTGATAAACTTGTTTTGAATCTGGGAATCTAA
ATCATCGATGTCATATTTTGATAATGTCTTTGGCAATCGAATTATGGAGA
ATGTGAAGAGATTTTGCAAGAGATTATGGATTGCGTTGATATAAGCTCGT
TTTATTGGACCAAGCTCGTTCAAGGCTTTATTTACGCTACTGAttgaata
ccctggtgttgacTAATGAGAACTTCTTGAAGGTCGAATAATACGGAGGA
AACGAGGTTGTTATTGCCTATTGGGCATTTAATTCCATTGAATACTTTCA
AATATCTATCTATGTTCTTTTCGTTCAatgaaaattaagaataatgatAT
TTCGAAACCACATTGAATGGATGGAGTTACGTAACCTTTGTTTATTGCTT
TGCAGACATCTCATCATGACATTTTTGGGACTCTCAACTTGGTACTATTT
TATACCAAGATAATCTATGGTTGTTTTCATCTGATTATATTTAagggaat
ttatttttttgaggaCTCATTATGGAGAGCAGCTAAAGTcctaaaagttt
tcaaatttttattttggcgagagCTAGTTCTATCCCAAATTAGTTTCCTT
AAGATTTTATATGGCAAGATAAGTTATTCATCACCAACCAATTTAGATGA
ATTCATAAACCGGTATTACAGAAATATTTCGAGGAGTCTTATGCCATACT
CCAATAATttacctactctcgggtacctaatagccgttccccccgctaat
taatttttcgaaagttttccactcaggaaattcttattccaacaccctcc
gcttattaatttttgagaaattctccACCCAACCCGCTCGTTCcaaaccc
cccgcttattataGGTACCCGAGAGAGTACAATGTTATTGAATAGAGAAA
ATATTGTAAATAGGGTTATGAACATCAAACATGAATTTAGTAATTGATTA
AATTATAATAGAACTAAGTGAGAAAGACACCTCCAAACAGTTTGATGAAA
CTGTTTCTCGTTTCATTTTTCTACGTTTAAAAT

Coding sequence (CDS) from alignment at sc0000001:1673532..1682564+

>TCONS_00000076 ID=TCONS_00000076|Name=TCONS_00000076|organism=Clytia hemisphaerica|type=CDS|length=4830bp|location=Sequence derived from alignment at sc0000001:1673532..1682564+ (Clytia hemisphaerica)
ATGCAGAAGGAAGATTACATCTTCACATCGACCGGTTTTCGGAAGTTGTC
ACCCAGTCCGAAAGGTTTACTTCATCGAAGAGTGCGATCGGCCAACTCAG
TGTTAttgagaaagaaagagaaaagtgAAGAAACTGTCATCAAGTCTCAT
TCCATGGAAAAATATGTCGATGAAAGGAGAGGAAAAAGCACAAAGACTAT
ATTCGATGTGGGTGCAACAAACAGTATCAAGAAGCGACCTTCCACAGCTC
AACAGTCTTTGAGACAAAAAATTCATCCAGCACCACCAGGATACGTCTAC
ACTATGAATAATCTAGAATGTGCTCCACCACAGCTCTATCTCAACGATAA
AGTTCGTATTTACGCTAAGGAACACAGGAGAGCACAATCTGCGTTGGAGA
ACACAAGAGATATTCCCAAGGCTTCCTCCTTCAACAGTGCTGGTAACAGA
AGAAGGGTCCAATCAGCTGATGTGGCATACCGTTTCGGTAAACGGATTCA
TCTCCCGCAAAATTATGCTGAAAATGAGCATCTAACACACGAAGGGTTAA
CCATGGGTCAGAAGCAGTATATTTGGGGTATCGCTCGGTGCTACTCAACA
CAGAATCTCAAAGAGCTCAATGATCGGCGAATGAAGATTATTGTAGACCA
AGAGCTAGACAAACGATTGAAAACTCACAGCATCTCcgataaagtgaaaa
aaaatcttatcaaaGAATACCATGATACAATTCAATACATCGACTACAAA
TCGAAGAACATCCACCCGAAGCGCCCAACAACCGCCAAAAAACAAACGCG
GAGATCTCCATCATACGAAGAAGAGAGTGACTCCGTACAAGGGGACGAGA
ATAGTTTTGATTGTGTGATTATCGTTAGAACACCTCCAACGTCACCACTA
GCACGAAGAAAGATTCTGTCAGAAAGATCATCCTCGACATTGATGTCACC
GAGTGTTGAATCTTGAATGCAGAAGGAAGATTACATCTTCACATCGACCG
GTTTTCGGAAGTTGTCACCCAGTCCGAAAGGTTTACTTCATCGAAGAGTG
CGATCGGCCAACTCAGTGTTAttgagaaagaaagagaaaagtgAAGAAAC
TGTCATCAAGTCTCATTCCATGGAAAAATATGTCGATGAAAGGAGAGGAA
AAAGCACAAAGACTATATTCGATGTGGGTGCAACAAACAGTATCAAGAAG
CGACCTTCCACAGCTCAACAGTCTTTGAGACAAAAAATTCATCCAGCACC
ACCAGGATACGTCTACACTATGAATAATCTAGAATGTGCTCCACCACAGC
TCTATCTCAACGATAAAGTTCGTATTTACGCTAAGGAACACAGGAGAGCA
CAATCTGCGTTGGAGAACACAAGAGATATTCCCAAGGCTTCCTCCTTCAA
CAGTGCTGGTAACAGAAGAAGGGTCCAATCAGCTGATGTGGCATACCGTT
TCGGTAAACGGATTCATCTCCCGCAAAATTATGCTGAAAATGAGCATCTA
ACACACGAAGGGTTAACCATGGGTCAGAAGCAGTATATTTGGGGTATCGC
TCGGTGCTACTCAACACAGAATCTCAAAGAGCTCAATGATCGGCGAATGA
AGATTATTGTAGACCAAGAGCTAGACAAACGATTGAAAACTCACAGCATC
TCcgataaagtgaaaaaaaatcttatcaaaGAATACCATGATACAATTCA
ATACATCGACTACAAATCGAAGAACATCCACCCGAAGCGCCCAACAACCG
CCAAAAAACAAACGCGGAGATCTCCATCATACGAAGAAGAGAGTGACTCC
GTACAAGGGGACGAGAATAGTTTTGATTGTGTGATTATCGTTAGAACACC
TCCAACGTCACCACTAGCACGAAGAAAGATTCTGTCAGAAAGATCATCCT
CGACATTGATGTCACCGAGTGTTGAATCTTGAATGCAGAAGGAAGATTAC
ATCTTCACATCGACCGGTTTTCGGAAGTTGTCACCCAGTCCGAAAGGTTT
ACTTCATCGAAGAGTGCGATCGGCCAACTCAGTGTTAttgagaaagaaag
agaaaagtgAAGAAACTGTCATCAAGTCTCATTCCATGGAAAAATATGTC
GATGAAAGGAGAGGAAAAAGCACAAAGACTATATTCGATGTGGGTGCAAC
AAACAGTATCAAGAAGCGACCTTCCACAGCTCAACAGTCTTTGAGACAAA
AAATTCATCCAGCACCACCAGGATACGTCTACACTATGAATAATCTAGAA
TGTGCTCCACCACAGCTCTATCTCAACGATAAAGTTCGTATTTACGCTAA
GGAACACAGGAGAGCACAATCTGCGTTGGAGAACACAAGAGATATTCCCA
AGGCTTCCTCCTTCAACAGTGCTGGTAACAGAAGAAGGGTCCAATCAGCT
GATGTGGCATACCGTTTCGGTAAACGGATTCATCTCCCGCAAAATTATGC
TGAAAATGAGCATCTAACACACGAAGGGTTAACCATGGGTCAGAAGCAGT
ATATTTGGGGTATCGCTCGGTGCTACTCAACACAGAATCTCAAAGAGCTC
AATGATCGGCGAATGAAGATTATTGTAGACCAAGAGCTAGACAAACGATT
GAAAACTCACAGCATCTCcgataaagtgaaaaaaaatcttatcaaaGAAT
ACCATGATACAATTCAATACATCGACTACAAATCGAAGAACATCCACCCG
AAGCGCCCAACAACCGCCAAAAAACAAACGCGGAGATCTCCATCATACGA
AGAAGAGAGTGACTCCGTACAAGGGGACGAGAATAGTTTTGATTGTGTGA
TTATCGTTAGAACACCTCCAACGTCACCACTAGCACGAAGAAAGATTCTG
TCAGAAAGATCATCCTCGACATTGATGTCACCGAGTGTTGAATCTTGAAT
GCAGAAGGAAGATTACATCTTCACATCGACCGGTTTTCGGAAGTTGTCAC
CCAGTCCGAAAGGTTTACTTCATCGAAGAGTGCGATCGGCCAACTCAGTG
TTAttgagaaagaaagagaaaagtgAAGAAACTGTCATCAAGTCTCATTC
CATGGAAAAATATGTCGATGAAAGGAGAGGAAAAAGCACAAAGACTATAT
TCGATGTGGGTGCAACAAACAGTATCAAGAAGCGACCTTCCACAGCTCAA
CAGTCTTTGAGACAAAAAATTCATCCAGCACCACCAGGATACGTCTACAC
TATGAATAATCTAGAATGTGCTCCACCACAGCTCTATCTCAACGATAAAG
TTCGTATTTACGCTAAGGAACACAGGAGAGCACAATCTGCGTTGGAGAAC
ACAAGAGATATTCCCAAGGCTTCCTCCTTCAACAGTGCTGGTAACAGAAG
AAGGGTCCAATCAGCTGATGTGGCATACCGTTTCGGTAAACGGATTCATC
TCCCGCAAAATTATGCTGAAAATGAGCATCTAACACACGAAGGGTTAACC
ATGGGTCAGAAGCAGTATATTTGGGGTATCGCTCGGTGCTACTCAACACA
GAATCTCAAAGAGCTCAATGATCGGCGAATGAAGATTATTGTAGACCAAG
AGCTAGACAAACGATTGAAAACTCACAGCATCTCcgataaagtgaaaaaa
aatcttatcaaaGAATACCATGATACAATTCAATACATCGACTACAAATC
GAAGAACATCCACCCGAAGCGCCCAACAACCGCCAAAAAACAAACGCGGA
GATCTCCATCATACGAAGAAGAGAGTGACTCCGTACAAGGGGACGAGAAT
AGTTTTGATTGTGTGATTATCGTTAGAACACCTCCAACGTCACCACTAGC
ACGAAGAAAGATTCTGTCAGAAAGATCATCCTCGACATTGATGTCACCGA
GTGTTGAATCTTGAATGCAGAAGGAAGATTACATCTTCACATCGACCGGT
TTTCGGAAGTTGTCACCCAGTCCGAAAGGTTTACTTCATCGAAGAGTGCG
ATCGGCCAACTCAGTGTTAttgagaaagaaagagaaaagtgAAGAAACTG
TCATCAAGTCTCATTCCATGGAAAAATATGTCGATGAAAGGAGAGGAAAA
AGCACAAAGACTATATTCGATGTGGGTGCAACAAACAGTATCAAGAAGCG
ACCTTCCACAGCTCAACAGTCTTTGAGACAAAAAATTCATCCAGCACCAC
CAGGATACGTCTACACTATGAATAATCTAGAATGTGCTCCACCACAGCTC
TATCTCAACGATAAAGTTCGTATTTACGCTAAGGAACACAGGAGAGCACA
ATCTGCGTTGGAGAACACAAGAGATATTCCCAAGGCTTCCTCCTTCAACA
GTGCTGGTAACAGAAGAAGGGTCCAATCAGCTGATGTGGCATACCGTTTC
GGTAAACGGATTCATCTCCCGCAAAATTATGCTGAAAATGAGCATCTAAC
ACACGAAGGGTTAACCATGGGTCAGAAGCAGTATATTTGGGGTATCGCTC
GGTGCTACTCAACACAGAATCTCAAAGAGCTCAATGATCGGCGAATGAAG
ATTATTGTAGACCAAGAGCTAGACAAACGATTGAAAACTCACAGCATCTC
cgataaagtgaaaaaaaatcttatcaaaGAATACCATGATACAATTCAAT
ACATCGACTACAAATCGAAGAACATCCACCCGAAGCGCCCAACAACCGCC
AAAAAACAAACGCGGAGATCTCCATCATACGAAGAAGAGAGTGACTCCGT
ACAAGGGGACGAGAATAGTTTTGATTGTGTGATTATCGTTAGAACACCTC
CAACGTCACCACTAGCACGAAGAAAGATTCTGTCAGAAAGATCATCCTCG
ACATTGATGTCACCGAGTGTTGAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000040XLOC_000040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000076-exon-sc0000001-1491911889:1673532..1673721TCONS_00000076-exon-sc0000001-1491911889:1673532..1673721Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1510915933:1673532..1673721TCONS_00000076-exon-sc0000001-1510915933:1673532..1673721Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1575043694:1673532..1673721TCONS_00000076-exon-sc0000001-1575043694:1673532..1673721Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1491911889:1673963..1673988TCONS_00000076-exon-sc0000001-1491911889:1673963..1673988Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1510915933:1673963..1673988TCONS_00000076-exon-sc0000001-1510915933:1673963..1673988Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1575043694:1673963..1673988TCONS_00000076-exon-sc0000001-1575043694:1673963..1673988Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1491911889:1674499..1674590TCONS_00000076-exon-sc0000001-1491911889:1674499..1674590Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1510915933:1674499..1674590TCONS_00000076-exon-sc0000001-1510915933:1674499..1674590Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1575043694:1674499..1674590TCONS_00000076-exon-sc0000001-1575043694:1674499..1674590Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1491911889:1675434..1675906TCONS_00000076-exon-sc0000001-1491911889:1675434..1675906Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1510915933:1675434..1675906TCONS_00000076-exon-sc0000001-1510915933:1675434..1675906Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1575043694:1675434..1675906TCONS_00000076-exon-sc0000001-1575043694:1675434..1675906Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1491911889:1676696..1676916TCONS_00000076-exon-sc0000001-1491911889:1676696..1676916Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1510915933:1676696..1676916TCONS_00000076-exon-sc0000001-1510915933:1676696..1676916Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1575043694:1676696..1676916TCONS_00000076-exon-sc0000001-1575043694:1676696..1676916Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1491911889:1681109..1682564TCONS_00000076-exon-sc0000001-1491911889:1681109..1682564Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1510915933:1681109..1682564TCONS_00000076-exon-sc0000001-1510915933:1681109..1682564Clytia hemisphaericaexon
TCONS_00000076-exon-sc0000001-1575043694:1681109..1682564TCONS_00000076-exon-sc0000001-1575043694:1681109..1682564Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000076-proteinTCONS_00000076-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1673532..1682564 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.29352	8.13761	3.6794	2.88327	70.9849	50.4482	34.5642	37.1125	13.2876	19.018	10.1268	10.2766	0.763392	0.575355	0.533906	0.885498	0.457566	0.705881	0.879324	0.80719	1.23965	1.39066	4.51459	4.28603	1.72692	2.16594	13.8205	13.253	1.12057	1.05249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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