XLOC_000040 (gene) - C. hemisphaerica

Overview
NameXLOC_000040
Unique NameXLOC_000040
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:1673532..1682564+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000040 ID=XLOC_000040|Name=XLOC_000040|organism=Clytia hemisphaerica|type=gene|length=9033bp|location=Sequence derived from alignment at sc0000001:1673532..1682564+ (Clytia hemisphaerica)
TTTaggaaaatcttaattttgtgTTACCATGCAGAAGGAAGATTACATCT
TCACATCGACCGGTTTTCGGAAGTTGTCACCCAGTCCGAAAGGTTTACTT
CATCGAAGAGTGCGATCGGCCAACTCAGTGTTAttgagaaagaaagagaa
aagtgAAGAAACTGTCATCAAGTCTCATTCCATGGAAAAAGTATTCAACT
TTATTTTTGACACTTGTAACAGTAACCCGATGTTATGGATAATTCCATCT
AGAGAAAAGGGAGTTTTATGAGAGCTAAATAAACggaacaataaaatatt
atcCTTTCAATCGGTGGGGACTTTGAATTCtataatttaaaatcaaaaga
tCCATAAGACAAGATGGCAATTCAGCCCAAAAAACATAGTCTTATGATTG
AGGATGTATTTAACATTTCGTTCTTTTTCAGTATGTCGATGAAAGGAGAG
GAAAAAGGTAAGACAATATACCCTTAGGTTCGAAATAAACGGGTGGGGTT
CGAAAACCCCAAGAATACAATTAGCTGATGATTTGTAAAAGATGAAACTG
ACAGTACTAAATTGATTCTTGTCtacttttttcttaaaatcgtatgaacc
taagagtacatgcGGCCTCTTTTTACTATGTACCACAGCTTAATTCAACA
TTCTTAAATTGTTTCTTGCAGTATCCCTTCTTATagtgaaaagtgaattt
tcccCCCGTTTACAGATTATATTCAAGATCGATATCACGATCCTCACGGT
AAATATcgcaaagaaaatatttctcgaaacttcaaattttcatcgaaaac
gCGAGCTTATCGATGAATAAAAGAGTAGAGCGTCGTAgttttttttaagg
aattttgATGGAATTGAAATTTGATACAGAAAACGAGACCTAAATAACAA
AATGTTGAATTAGAGAACATCTTCAAAAATATTCTCTATTCCTGTAATCT
ATATTTTACATATTCAGCACAAAGACTATATTCGATGTGGGTGCAACAAA
CAGTATCAAGAAGCGACCTTCCACAGCTCAACAGTCTTTGAGACAAAAAA
TTCATCCAGGTATTGTTTTAAGCTTTACTCCATCTTACCACATCCCCTTG
GAatcattttgtttatttatcataattgaaaatgaatttatCATGGTGTA
CTggccaatgaagtataagcccgaagggctagaagtcaatctccttggta
ggatttgaagccaacaaatcctaccaaagttgcgcggccttgNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNttgaaactaaaatttaccgctaaatttcgaaaaaa
atatcaatcgtaaacaaaggaattgctagattcaatctgtcgtcaaaaat
gcggcacattttttaaggcttcactttttcctgcctgagaaaggttagag
attgaactctagcttcgggctttaaactcaatggtatttgcaatacacgt
tttttataagagacgACTATTTTCggtggtcaaaatattaagaacaagtt
tagaacGTTTTTAAGGCGAATTAAAACTCGAGAAATTAATGATACGCAAt
ggtttaaaaattttaaattcttcaATCTAAACCTCATTGAACTATACCAC
ATTGAAATTCCAGCATGGGTTCCTGTTTATGATCCAATTTTAATCTTAAG
CACGTGTTGATAcggatttttaattttctgtaAATAAACGTTTGTTCCAT
AGCACCACCAGGATACGTCTACACTATGAATAATCTAGAATGTGCTCCAC
CACAGCTCTATCTCAACGATAAAGTTCGTATTTACGCTAAGGAACACAGG
AGAGCACAATCTGCGTTGGAGAACACAAGAGATATTCCCAAGGCTTCCTC
CTTCAACAGTGCTGGTAACAGAAGAAGGGTCCAATCAGCTGATGTGGCAT
ACCGTTTCGGTAAACGGATTCATCTCCCGCAAAATTATGCTGAAAATGAG
CATCTAACACACGAAGGGTTAACCATGGGTCAGAAGCAGTATATTTGGGG
TATCGCTCGGTGCTACTCAACACAGAATCTCAAAGAGCTCAATGATCGGC
GAATGAAGATTATTGTAGACCAAGAGCTAGACAAACGATTGAAAACTCAC
AGCATCTCcgataaagtgaaaaaaaatcttatcaaaGAATACCATGATAC
AATTCAATACATCGACTACAAATCGGTAAGCCGTATATGACCAAAGACAT
TATAAAAAATCCTGGTGTGGTAATGTATTGTTATAGGTTTATTGTCAAAT
TTTCCTCTGTTGTAAATAAAAGTTAAATTGCggttttcatattttttgaa
cACATTTCCGACCCTTGAGAATAGTTCATGTTCTAGTTACCATGATgtgc
ttacaaaaaaaaataggcTTAAAACAAATCCATTAACGTATATAAGCTCT
AATTGTTAACAATAGAAAGGAACAAAGGCCTTCCAGACCGGAGTTTTTAT
AATGGCTATGATCTCGCAGATATCTTTACACGTCAGATTGGCTAACTGCT
CACAGATCTCCCGTCGAAGTGTGTCCAGTGTTGAAGTCGACAAGCCGACA
ATGTTGTTTTCAAATTACCTCAaattttcgaacgtttgaaTACCAAACAT
TTGAATCGCGATGTTTTcttcaagatttgaaaacagcATGGTGAACGccc
cttttcgaccgtagtcgctcGGTCAGGCACGTGTCAAGACGTGTcgcttt
attatttaatttaccaccctaaactcgatccgatccttttttacactttt
tctattgtctttaggcgcgaaaaaagactgggacggtttagggtggtaaa
acggataAAAAACGCCCTCGctgcaattggcggctacggtcgaaaaggtg
tatttgttTTCATCCGTAACTTAAATTCAGCTACATTCAGGGTGACTCAA
GTGACTTTTTATCATGATTATTAAAACATCTTATTCTTTCTTATTCTTTC
TTTATAATTTCTAGAAGAACATCCACCCGAAGCGCCCAACAACCGCCAAA
AAACAAACGCGGAGATCTCCATCATACGAAGAAGAGAGTGACTCCGTACA
AGGGGACGAGAATAGTTTTGATTGTGTGATTATCGTTAGAACACCTCCAA
CGTCACCACTAGCACGAAGAAAGATTCTGTCAGAAAGATCATCCTCGACA
TTGATGTCACCGAGTGTTGAATCTTGATGGATACGGTAAGTTGTTTAGTG
TTCGCCAGAGAGAGCGAATTGTATTTATTACGagctgtacacgttttttt
aacaaaaacatcaaatttttttgatgccttcggatgttcttaacttttgg
agttttaagTCTTAAATGCTCTTAAAGATTTTATCTTATGTTGATATAAG
caagaaaatgttttgctttcccttattctgaccaatcttgctcaacattt
gtgtcaattcaatgtgaaaaagcttgtgcattaaaattgatgagtaagca
aacgatatcactcttatttaaaaacaaaaccttaatatgttcttattttg
gaCTATTTTCATAAGAAGTTGGGTCTGCGAAACCTTAAAAACGTTCTTTA
cttgttcttatattttttccttatatagtctgttcttataaaaaaggtgt
attaaccAGAGGAGGATAGGGCTAAAGCATGTCTCAAAATAGTCTGCAGC
GGAGAAAAAAAAGGCTAAAACTTCTGCTAATAGAAATAAAACCTAAAGCC
GGTTCTgtgctcgttggaaagatattcaggaatgagaaattattaaaaag
aaaaacaaaacatttggagaattatttatttattccaACTTTTGATGATA
TTAAAGAAGATGAAAGATGACAGTTGTGGTGACAGTTTTACTTTTAAAAG
TTACCATAGTAACCAATGCTGAATGTGTGCTATCAAATTTTACAGAACGA
TTCTGTAGAATATTAAATGAAGCATTTTTTCCCACGATTTGTTTACAAGT
AGTTTTTGAAAGCAGCTTCTTGTCTTGATTGATTTAATAATTGATTTGCA
TTATAGCAAGAAAACAGGTGTTTTGTGTCTTAGTTTTTCGAATTactaaa
tcaaaaaattcatttaacATTAAGCAGAAACCAAAGCTTATCAGATATTA
ATTTGCATGTTCGATTTATGTATtcgaatgaaaaattattttcgaaaaga
aaatttctCCACCGGTATGAGGTCGCAAACTGGCTTAAGTTTTAGTATTG
AattattcaatgttttgatttttttcgttttctcaATCTATGCTCTTCTC
TGAATAGATTCATCttaagttttgcttttctttcatctttcaaattctct
gtGACCCTTTACTACTACGAAACTTTTTAATATGATAAAGCTAGACGCAG
CTTTCATAGAAATGTTATGTATATCACACTTGTGAATAATAAAAGAAAGA
TATATTCTTATAATAAGTAACATTGTGAATACTTCTTCCTTCGATCaatc
aaaaatatcaagaatggTGAATTTGATTCATCTCTCAAGTAGAAGAACTA
GCTCAGCATTTTCCATATTTTTGGTCAATATTCTCTCGTTTTATTATTAT
CGACTGATCTTTTGCTTGGGGCTGGATCCTTGATTCTCAAGCTGTGAAAC
TGAGAAAGACCGACATCTCTTTATAGTAACAGAAATTTTCTTAATACAAA
TTTCTTATTGTGGGTTCGGTGACTCTCACTTCAAGAATTTTTCGATCATT
TTGTGCTGCCATAAGCAACAACGTGTCAATCCaaggtaacattcaaattc
tttcGCTTGATAATCTTTGTCAAGTCATTATTATGTTTTAAATGATTGGA
TtattatacacccccttctcacagacccggtaggattcttTCAGCTAGCG
AggataaaaataacagactgaaGCTCAATGGGGAAtaatattcccatatt
tttaatGGCTGGCgatttaattcttttgttttcaaaaaatattttgcaat
gaggattggtttaattgattattttcagtggggacaaaaagtggagtata
attttccaccgcgcggggacgatattttggccaatttttccagtgggaag
ggctcccagtgggtttgtgagaaggggttgttATTATGATTTCATCGGAT
GGAGTCGCATTTCTTGTGTAGTGTAGGTCAAGTAAGCAACGTGTTCATTT
TGGATAACTGTTTACTTAGTTACTATTTTTTATTCGATGCGCTTCTTTGA
TAATAttgagaccatgttcagacatgtgaacgtcaaaattcgaaacgtta
AAAAAGAAGGGTGAACATGGTCTGAAAGACATCGTCACCAAGAAACTGTC
ATAAACGATGCTCTACTTTTCGATACGCTTTCTTTTTCGATGATAATCGA
ATTCGAGAGCGTCAACTAACTGTATAATGTTTTCTCGTTCTTCTCTTTTG
AAGAATTTCGCTGGGAAATGAACCCACTTTATTTCCCATCCTAAAAGGAG
TGACCCgtgtgttttccaaacaaaatttctaaatgcgAGGCAactttaag
gcttcactttttcttgcttgagcaaggttaaagattcctctctagctcct
ccggggcttcaaactcaatggttcAACCCTCGCCCACATGAGACAATGGG
TTTTAAAGGTTTTACAGGTTTTAAATCTACACTCATTCAAAgcaagagat
tttcaaattttgttgctTGAGTACTCAGCTCTTttaagacaggggtgttt
attttTTCGAAAGCTCTCTTTGTTTTCCCAGTTAGGTTGCGAACAtcaga
taaacgttgaaacaaccttGTGTACCATCTGGTGGGTTgtctttgtaaaa
gatttttgaagtcttttgaaattaaaaaaaaaatccttagCAGCACGAGT
AGCTTGCTCGAGGCTATAAAATCCTAATTCTGTACAGTGGGAAACTCATG
AGTCATCTTGTAAAGTGCTGACCACGagaaaaaattcgtaaaataagTAA
AGTTACATcaccattttttttgcattgagTGTGCTTTATAATCATCCCTG
CATCACATGACATAACAAACCATCTCATTTCCATGGTAATCGTACAGGTG
TTGCATACATAATTGATTACAAAACAAGCTTGTTGTTCACTTCATCCTCT
CGTGTTTTACATCTCCGTCATCAATTATTCACACATTCTCAAATCCCAAT
catcaatacacgttttttataagaacatactatattagaacagaagtttt
aaaagaagtttccaaaatattaagaacaagtttataGCTTTTCAGAATCT
AAAAATCGCcctatttcttaagaaattggacaaaaatagtgaaaataaga
acatcttattaagaatatttttagaatttaaacttaaaaaagttcagaac
attcgaaggcttcaaagattttagatgttcttatgaaaaacctGTAGGGC
TTATTCATGGTATACTGAATGTGCTATTTTGCGTGGCTTTTCCCATCGCT
CCCTTTTTGTCTCACAACAATGACGTGTGGTTTTTCTGTGGGATTGCCAC
TTTTAAGGTGTAttaatagtgtaggttttaagatGTCACTTGATTTTAAt
gtacatttttgaaaatatttagatcTAATTGTAGTATtagtaactttgca
gtgaatcaATATTCAAATTTGACACCAGAaggactattttataaaaccat
tttgtaggtttatCGGGTAAATAGCTCGGGGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggtact
acccttgtcgaccgacgggggtgctccgctgaggttcgaaaaatggaccc
tacgtgggactcgaaatttgcgaaaaagtgaccttgaaaaaaattccgaa
attttctcaaattttctactttttccccaaattttccaaaaaaaggcatc
CTACGATAGactgatttttctgttttggtgtttttgccaccctacctggg
actcgtggaggttaaaaaaggtaccctgaccagcggagctaaaattgcat
ttttttcaCGAAGCAAGAAAAGTTTTCTTAGCAGCTTTTACAAAATACCA
TACCCGTGGAAGAAATTCATAGGTAGCCTAGACTCACCCGAAGAAGTTTC
AGCCCTTACTGTTTTCTCTATCAGGATATaggggtaccttttttgttgta
ggttttaaggggtatccactggtatgcttctccttttctttatttttaac
ttcttttttttttaattctttttccaGAACATCACATGGGTTTGAAAACG
ATCAACAAGAACACGAAACGAACAATTCGTTTTCACCAATACGACCACCA
AGGGAAGAAGATCAAACATCCCAAGAAACAAAAAGTCATGACTATTAGTT
ATACTCTCAAAcaacaatctgaaaaaaataacaatacaAATACGAACAAT
GTCACTCGATCTGAGCATAATTACAGCATGCAGTTATTACCGAAACAGCG
TGGTGCTggcaaattgaccaaaaaaacaAGCGAACATTATATTATTTGTG
AGATTGGTAAAATATTGTTACGCGAAGCTGAGAAAGTTAAATCCtttgaa
aaacaattaggtGAAAGTTACAACAAATTTGATTTGGACAGTTTGCAATC
ATTTCATGAATATGCTGGATATTTAGAACTTGTTAATCCTATTTGCAGTC
CTGATTCTGTGGATACTGCTGATAAACTTGTTTTGAATCTGGGAATCTAA
ATCATCGATGTCATATTTTGATAATGTCTTTGGCAATCGAATTATGGAGA
ATGTGAAGAGATTTTGCAAGAGATTATGGATTGCGTTGATATAAGCTCGT
TTTATTGGACCAAGCTCGTTCAAGGCTTTATTTACGCTACTGAttgaata
ccctggtgttgacTAATGAGAACTTCTTGAAGGTCGAATAATACGGAGGA
AACGAGGTTGTTATTGCCTATTGGGCATTTAATTCCATTGAATACTTTCA
AATATCTATCTATGTTCTTTTCGTTCAatgaaaattaagaataatgatAT
TTCGAAACCACATTGAATGGATGGAGTTACGTAACCTTTGTTTATTGCTT
TGCAGACATCTCATCATGACATTTTTGGGACTCTCAACTTGGTACTATTT
TATACCAAGATAATCTATGGTTGTTTTCATCTGATTATATTTAagggaat
ttatttttttgaggaCTCATTATGGAGAGCAGCTAAAGTcctaaaagttt
tcaaatttttattttggcgagagCTAGTTCTATCCCAAATTAGTTTCCTT
AAGATTTTATATGGCAAGATAAGTTATTCATCACCAACCAATTTAGATGA
ATTCATAAACCGGTATTACAGAAATATTTCGAGGAGTCTTATGCCATACT
CCAATAATttacctactctcgggtacctaatagccgttccccccgctaat
taatttttcgaaagttttccactcaggaaattcttattccaacaccctcc
gcttattaatttttgagaaattctccACCCAACCCGCTCGTTCcaaaccc
cccgcttattataGGTACCCGAGAGAGTACAATGTTATTGAATAGAGAAA
ATATTGTAAATAGGGTTATGAACATCAAACATGAATTTAGTAATTGATTA
AATTATAATAGAACTAAGTGAGAAAGACACCTCCAAACAGTTTGATGAAA
CTGTTTCTCGTTTCATTTTTCTACGTTTAAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000076TCONS_00000076Clytia hemisphaericatranscript
TCONS_00000077TCONS_00000077Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000076-proteinTCONS_00000076-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1673532..1682564 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.41	8.14	3.68	2.88	71.51	50.45	34.77	37.82	13.46	19.02	10.33	10.42	6.09	4.83	4.77	6.74	1.29	1.61	0.89	0.81	3.18	3.52	5.1	6	1.88	4.44	14.28	13.46	1.12	1.05