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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000070 ID=TCONS_00000070|Name=TCONS_00000070|organism=Clytia hemisphaerica|type=transcript|length=1730bp
GAAACATCttgaatattttgttttgaatgattGTTGAGAGTGTCACCAgc
atgaattttttgtttgggAATGAAGTTGACAGAAATAGAGCAGCACAGCG
GCCTTCGCTCAGCATGTTCATAGCAAACGATACAAGTACACCTTCTACAC
ACGTCCGAAGAAGAGGCTCTGTACAAAGTATAAATTCGGACACTGACTCA
CGTGGCGTGTATGATCAAAAACAATACAAACGACGACGTAGAAGAACCTG
GGAACGAGGTGAAACGGAAAACTCGTTGAAACGAAACCCGAATAATGCAC
CGAGGATTCGGATCAATGTTCGGGGACGGAAATATGAAACGTACATAGac
ACACTTGACCGTTTTCCAGACACGTTACTAGGCAACAAAGAACTTCGTAA
CCAATATTACAATGAACGTAAAGAAGAAATTGTCTTGGGTAGAAATTATG
AAGTCTTCGAAGCCGTGCTCTTCTATTAccaatcaaatgggatcttggCA
AGACCAGCTTGGGTTAgcgaaaaagattttgaaaaagaactaaaGTTTTA
TCAACTGCAACCATCCGAATCTGAAAAActgagaaaagaaaaagaagctc
AGAAACAAGCGGCTAAAACGTTAGCATCAGAGCGCCGCCCTGCTTATCAG
AAACTCATATGGAACCTTATGGAACACCCTCGTTCATCAACGCCCGCCTT
CACATGCGCCATTCTCAGTATCTTTACAATCATCATTTCAGTCGTTGTAA
TCTGTCTTGAAACGATGTCCTCGATCACAGACGATCCTGATAAAAAACGA
GGCTACATTAATcgcaaagttttattttatcttgAAACGACAGTCATGAT
ATGGTTTACTATGGAGTATTTATTGAGAATCATTTCAGCTCCCAGAACGT
TCAAATTCATATTATCACCTACAGGAATAATAGATTTGGTTGTTATATTA
CCTTATTACATCAATATTATAATCGGTGAAGAAATCCGTTCGTTTAATTT
AGCGGTATTCCGTATAGTGCGAATGTTTCGCGTTTTCAGGATTTTCAAAT
TAACTCGATACAGTACCGGATTGAAAGTGCTGGGTCGTACTATTCTTGAA
AGTTTTGGACAACTTGTTGCTCTCTTTCTCTGCTTATTTTTGTCAGCGAT
TCTATTctccagttgtttattttttatcgaACACGATAGCTTGGACCATA
ATTCCGAAGTGTTTATTAGTATTCCGGACACTTTTTGGTACGTCATCATT
ACTATGACTTCGGTTGGTTACGGAGACGTCGTTCCGCGAACGTTAATTGG
ACGTGTAGTTGCTGCCTTTTGCATGGTAACAGGAATTATAGTTTTGTTAT
GTTTACCAACACCCGTCTTTGTGACGCATTTCGGACGATTTTATGAAGAC
GTCATCAGTAGGCCGGCCACTGAACAAGAAGAGGATGATGAATTGACCGA
CTCTGAGATTTGGCGTAATGGTGAACACAATCTTATGATCCCAAGGTGGG
TCAATGATGATGCGTGGAAGGAGAAAATTAGGACTGATGTTAATCAGAAT
CTGACGTTACCAGGGTTAAATGTTTACTTGAGTACGTCTAATCTGTTTTT
ATCCAGAGCTTGCAGTCAAGAAGTGTTGCATAGTATTCATAACTCACCAA
GTAAGTAGAATctggtaattttgaaaaatgttttttttgtaaaaattata
tactttttgggttttaccaaagaaataaag Run BLAST on NCBI transcript from alignment at sc0000001:1523361..1530269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000070 ID=TCONS_00000070|Name=TCONS_00000070|organism=Clytia hemisphaerica|type=transcript|length=6909bp|location=Sequence derived from alignment at sc0000001:1523361..1530269+ (Clytia hemisphaerica)
GAAACATCttgaatattttgttttgaatgattGTTGAGAGTGTCACCAgc
atgaattttttgtttgggAATGAAGTAAGTTTGATCATTTTAAAAGAATG
CAATCTAAGActcaaagattcttttttttataagaacaatgttttaagaa
caacgaggctggaaaatataagaacaatttaagaataatgctgACCCTGT
GGAACTGCCGAGTTTCAAGAAATTCAaagatgttctttttttttaagata
tctCAATCTTGCTCCTAAAATATAGGAACAgtataagaacaatctgaggA
TTAGAGGTTCAAAAATAAGAATGGTCGGTCCTTAAGAAAAGTTAAGACTA
CAAttcactggttcttataaaaaaaggagtATACGGCATTAAAGTTAAAC
CCGTAGCCGACTAAGATTTCGACAgacctgtctcacagccccggtggaac
tctTTTTCTTAATGggaataaaaattctattgttccaaggttaaaaaatc
cagtggggatggttttggagtgcaatttttaaacattgaatttcgagtgg
ggatgaaatcaaagtcaattttccaatggggctaaaattccagggtattt
tccaacCGCGCTacattttccagtggggctggggttccAGCGGGTTTGTA
ACACAGGGGTGCATTTTGTCAAAACGAAAAAGTTAGAGGGTTTGATCAGA
CGAAAAGCTGAGGCGTCAAAGAAGAAATGGACCAACTATGAAAAGCGGTT
TCCGTGATGGCGTGATAAGGAACTTTTTCTTGCGTAATAACgtgttttgc
aaattttttattccaTCTTTGAGTGATCAGAGGTCAAAGCGTGATTGTGA
ttggaaagatttttgagccgtgatgcgtGATCTGGACTTTCTCAAAAGGA
ATGCGTgattatccaaattttttatttattttcgtgatcgtgattgaaga
caaaaaatagCGCAACATTGTGATAAATCATAcattcaatttttgaagtt
tAAATCTATCCTCTACTTTGAAATGACATGTATATGTGTTCATTGTACTG
GGCTAAGTTACGTTAATAATACTCCGGTATAGATAATATTTTGATATCCC
GCACTGGCATTGTTTGCACTCGTGGGTCTGTAAGAGAATTTGGCCAGGTT
TGCTATTCAGATTCGGAACGAATTAACCCAGTCGCTTTCGAGCATGAGGC
AAGgaggttttgaatgttttgactAAACAACCAGTAAGATCGTCACATTC
GCCATATCCTATTAGCAAAGCGTGGTAttcgcagaatggatgatctgtta
cacgtttttttataccaacaaactatataagaacataaggcttcgacggc
caaaattttcagaatatttttaaggctttatggactcaaaaacactcgat
ttcttaggaaaatgggtaaaaatggtcaaaaatttgttaaaataagaaca
tgctaaggaCATCTCTTAGTGAAGAGTATGAGATGACAGACTTTTGAAAG
ATGAGGAAGAGAGAAGAAACCACATATGATTCTAGACACGCGGTAGGGGG
CGAAGCAAAGCAGCTACCTCCATTTAATCGTGATTCGAATTAAAATAACT
GAGATAAATCGAAATTAATTTGCCATTCAAAAGGGTAGGGTTTCATTTTT
CATAGATTCCAATTGAAATCTATGACGACTGCATAATGAATTGAATATGT
CAAAATGAATTCGATAGCCAGGGGAGGTGCTATTGTTTCgactgttcttt
tttgtttcctGTCTGTGATTTGATGTATCGAAAATCATTTCCGTGTAAAG
TTAACGTGACATGTGgggaagttgaatttttctGAGTCAGTTTATTTTCT
GAGTCAGTTTATTTTCTGGTGTAAAAAATATTGAACCGTTGAACAGATTT
AGTGTTGATACTACTAGAATTCCAAAATGACTCCACAGTCAACAGATGAT
GAGGTAGGATTTATCAACATTCTCCAATATACCGTGTGCATCAAGAAAAA
GTTGATTCTTTTTTATTCTATATAGGAAAActcaacttaaattttggtat
atgaAGCTTCAGTTCAGTCAATCAAAACCTAtgtttaaaaacctgaaaat
tttgaCCTACCTAAAATGACAAAATCACACTTGCgtatgtttcttttctc
ttctaACTCCACACTTAACAAATTATAAGGTGGGATTCAATAACATTCTC
CAATATACAAGCAAACTTTCTTCCTTGAGTAAATTATTCACTGtatgttt
cttttgtttctcttttctaaaactttttaaaactgCAATCTACAGTACTA
ACggtacccggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
aattttttcaaaatctgtcgTTGCTATACATGAGGATATTTATAAGATTT
TTCAGGAAAGTTGTGAACGATTGCCGCGTTTACgcttgtatttttttaaa
ttaaaatgccgtttgaagaaactttttgttaatttaatgCAGGCTGTGTA
CTGTATTAAACATTTTCACTTACACACCTCAAAAGCAAGCTCAgtaatat
gcttgtaatatgcttattttttagacaaattcaggTCTTGGTATgcttat
gcttataaaaaaaacatgtagtctaGATATTTTGCCCAAatatgctagaa
ttttgaccattttttgctcaaaaaggattgaaaattTGGGAGGAAATGTA
CTCTAAGGGAACGGTACTCTTTACCAGAGCAGAGTGTCTATATCTTACGT
ACTGTGTGACTTAGTATAGCCTTTCACTATCCCAACACATGATTTCTCTA
GCACTCTGTGGGACAGGGTtgaggaaaaagccgtggtcgttTGCCGCAGT
GGTAGTTACAGAGCCAAAGCCGATCGAGCACCAAATAACGCCCCACGCAG
CGAAGCCCATAGTGATAAAGAGGCGGTGCAACAACAAGACAGTTAAGTCT
GTGTGTGGATAAGCCTGGTGTTATGTAGTGCGTTAATGAATTATGAATGA
AATTCCGTATGTATCGGGTCTGGCATTATACATTCAGATATTGGGTACAT
CTACCTTGAAATAACACAAAACCAAGCTGGCGAATAACTCACAAAATTCG
GTCAATTCGGTTCGTCTCTCGAAGTATtcggaaattttcattttcagtgg
ataCCTATGTTTTCATTTAAGTACGGTACATCTGCTGGAACAAAGTAGTT
TTGCCGTTTTTAACAAGCCAatgcaaaattttataaaatttgaaattttt
cttcaagcCTGTGCTTATCATATTTGCATGACAACTTTAACACCTTGAGT
GAAAAGGCTCTGTTGGACAGATTCTATTATGAATAAAATCAACATCTTAA
GTGTGAAATGGGTAAATATTAAGTTCAGTGAATTTCCAAATACTGTATAT
AAGCGAGCCTCAAAGAAAAGCTGCAAACTTAAATTACCATCTGCAATGCT
TGAAACTTTTCCAGACAGTAGGGTTTAGAAAGTGAGAGAGCTTTTAACTT
ATTCCTGTCaagactatatatatatatatacggGATTGACGGCATATTTA
AGAACGTCATAAtacagtctccataactcgaacacgttcgggaacacaaa
tttgttcgagttaaagagatttcgagatatggagtaaggtttacaTGGCA
TAACTgcggacgagaaaacttgttcgagttaaggagatattcgagttaaa
gaggttcgagttaaagagactctactgtaattCTAAGCAGGGAACTCTCA
GCAGGCACACAacgctgtttcaacgttcatctaacgttatatggacgttg
tgaacgttagataaacgttgaaacaacgttgtatgccagCTGGGTAGTTA
TTGATGATAAGTGTAGCCAAGTCTGAGAAGAAAACGTTTCAAATTCTTCA
TTTTATAAATTGATAGGTTGACAGAAATAGAGCAGCACAGCGGCCTTCGC
TCAGCATGTTCATAGCAAACGATACAAGTACACCTTCTACACACGTCCGA
AGAAGAGGCTCTGTACAAAGTATAAATTCGGACACTGACTCACGTGGCGT
GTATGATCAAAAACAATACAAACGACGACGTAGAAGAACCTGGGAACGAG
GTGAAACGGAAAACTCGTTGAAACGAAACCCGAATAATGCACCGAGGATT
CGGATCAATGTTCGGGGACGGAAATATGAAACGTACATAGGTAAGATAGt
tgaatttccatttttcattgaaaactgaaaaacctCCAGTGTCACATCAC
GATTTGAATTATTTCAAACTCCTACAGGGTCAATGAATGGATAGACATTA
TTTGAGGCTAGAAAAGCGTTGCTTCCAGCTCAAAGATTATCCAGAGGTCA
GAAAGTTGGTACggattttttttgtaagaagcctttgttcttttaacttt
tttagttttaagcctaaagatgtttttattttcaccactttgtgggtatt
tctttccattttcctaagaaatcgggtgttttagagtccgcaaagccttg
aaatgttcttgccttgttcttaaaatgttggCCATCGAaacattatgttc
ttatattctTTGCAAAAAACATGTATCAATTAGATAGTGAGAAGGCNGTT
CTTAAAATGTTGGCCATCGAaacattatgttcttatattctTTGCAAAAA
ACATGTAAATTAGATAGTGAGAAAGGTACTTTCAAATAAGTTTCCATAAT
ATTAAACAAATTCtccattttctttttattagacACACTTGACCGTTTTC
CAGACACGTTACTAGGCAACAAAGAACTTCGTAACCAATATTACAATGAA
CGTAAAGAAGAAATTGTCTTGGGTAGAAATTATGAAGTCTTCGAAGCCGT
GCTCTTCTATTAccaatcaaatgggatcttggGTAAGTTTTTAAGAAGAC
AAAACTCTCAcaacaagttttcaaaaaatcttggcGGAAATTACAATAAA
TCTTTTGTCCCATGGATCTTTGACCAAAGCCTTACCCTTACAAGCAAAAC
GGAAATCGTACAAACAAGTTACGCAACTATACGATAAAGTCGTTCTTTCT
AATAATATTGATTTAATCAAGATAATCAGGAATTTTATACACCATTAGCA
TcagcatcccctatatcaaaacatatcagagggaaTGCGTGCAGCCTAAT
AGAATTTTAAACATTATTCCATTCCAGCAAGACCAGCTTGGGTTAgcgaa
aaagattttgaaaaagaactaaaGTTTTATCAACTGCAACCATCCGAATC
TGAAAAActgagaaaagaaaaagaagctcAGAAACAAGCGGCTAAAACGT
TAGCATCAGAGCGCCGCCCTGCTTATCAGAAACTCATATGGAACCTTATG
GAACACCCTCGTTCATCAACGCCCGCCTTCACATGCGCCATTCTCAGTAT
CTTTACAATCATCATTTCAGTCGTTGTAATCTGTCTTGAAACGATGTCCT
CGATCACAGACGATCCTGATAAAAAACGAGGCTACATTAATcgcaaagtt
ttattttatcttgAAACGACAGTCATGATATGGTTTACTATGGAGTATTT
ATTGAGAATCATTTCAGCTCCCAGAACGTTCAAATTCATATTATCACCTA
CAGGAATAATAGATTTGGTTGTTATATTACCTTATTACATCAATATTATA
ATCGGTGAAGAAATCCGTTCGTTTAATTTAGCGGTATTCCGTATAGTGCG
AATGTTTCGCGTTTTCAGGATTTTCAAATTAACTCGATACAGTACCGGAT
TGAAAGTGCTGGGTCGTACTATTCTTGAAAGTTTTGGACAACTTGTTGCT
CTCTTTCTCTGCTTATTTTTGTCAGCGATTCTATTctccagttgtttatt
ttttatcgaACACGATAGCTTGGACCATAATTCCGAAGTGTTTATTAGTA
TTCCGGACACTTTTTGGTACGTCATCATTACTATGACTTCGGTTGGTTAC
GGAGACGTCGTTCCGCGAACGTTAATTGGACGTGTAGTTGCTGCCTTTTG
CATGGTAACAGGAATTATAGTTTTGTTATGTTTACCAACACCCGTCTTTG
TGACGCATTTCGGACGATTTTATGAAGACGTCATCAGTAGGCCGGCCACT
GAACAAGAAGAGGATGATGAATTGACCGACTCTGAGATTTGGCGTAATGG
TGAACACAATCTTATGATCCCAAGGTGGGTCAATGATGATGCGTGGAAGG
AGAAAATTAGGACTGATGTTAATCAGAATCTGACGTTACCAGGGTTAAAT
GTTTACTTGAGTACGTCTAATCTGTTTTTATCCAGAGCTTGCAGTCAAGA
AGTGTTGCATAGTATTCATAACTCACCAAGTAAGTAGAATctggtaattt
tgaaaaatgttttttttgtaaaaattatatactttttgggttttaccaaa
gaaataaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000070-exon-sc0000001-1491911889:1523361..1523434 | TCONS_00000070-exon-sc0000001-1491911889:1523361..1523434 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1510915933:1523361..1523434 | TCONS_00000070-exon-sc0000001-1510915933:1523361..1523434 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1575043694:1523361..1523434 | TCONS_00000070-exon-sc0000001-1575043694:1523361..1523434 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1491911889:1527777..1528050 | TCONS_00000070-exon-sc0000001-1491911889:1527777..1528050 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1510915933:1527777..1528050 | TCONS_00000070-exon-sc0000001-1510915933:1527777..1528050 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1575043694:1527777..1528050 | TCONS_00000070-exon-sc0000001-1575043694:1527777..1528050 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1491911889:1528593..1528742 | TCONS_00000070-exon-sc0000001-1491911889:1528593..1528742 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1510915933:1528593..1528742 | TCONS_00000070-exon-sc0000001-1510915933:1528593..1528742 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1575043694:1528593..1528742 | TCONS_00000070-exon-sc0000001-1575043694:1528593..1528742 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1491911889:1529038..1530269 | TCONS_00000070-exon-sc0000001-1491911889:1529038..1530269 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1510915933:1529038..1530269 | TCONS_00000070-exon-sc0000001-1510915933:1529038..1530269 | Clytia hemisphaerica | exon |
| TCONS_00000070-exon-sc0000001-1575043694:1529038..1530269 | TCONS_00000070-exon-sc0000001-1575043694:1529038..1530269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1523361..1530269 + |
Blast
BLAST of TCONS_00000070 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 222.246 bits (565), Expect = 1.291e-64 Identity = 151/402 (37.56%), Postives = 231/402 (57.46%), Query Frame = 3
Query: 324 GRKYETYIDTLDRFPDTLLGNKELRNQYYNERKEEIVLGRNYEVFEAVLFYYQSNGILARPAWVSEKDFEKELKFYQLQPSESEKLRXXXXXXXXXXXTLASERRP----AYQKLIWNLMEHPRSSTPAFTCAXXXXXXXXXXXXXXCLETMSSITDDPDKKRGYINR--------------KVLFYLETTVMIWFTMEYLLRIISAPRTFKFILSPTGIIDLVVILPYYINIIIGEEI----------RSFNLAXXXXXXXXXXXXXXKLTRYSTGLKVLGRTILESFGQLVALFLCLFLSAILFSSCLFFIEHDSLDHNSEVFISIPDTFWYVIITMTSVGYGDVVPRTLIGRVVAAFCMVTGIIVLLCLPTPVFVTHFGRFYEDVISRPATEQEEDDEL 1445
G ++ET + TL +FP+TLLGN + R +Y++ + E RN F+A+L+YYQS G L RP V F +E+KFY+L EK R+++ + E RP YQ+ +W L E+P SS PA AI+S+ I+IS+V+ CLET+ + DD D G ++R F +ET +IWF+ E ++R + P F + ID+V I+PY+I +G EI ++ +LA+ R++R+ RVFRIFKL+R+S GL++LG+T+ S +L L LF+ ILFSS ++F E + + + F SIPD FW+ +++MT+VGYGD+ P T+ G++V + C + G++ + LP PV V++F FY TE EE +L
Sbjct: 45 GLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGF-------IKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFT-GTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFIT--LGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESH---FSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLT-IALPVPVIVSNFNYFYHR-----ETEGEEQAQL 427
The following BLAST results are available for this feature:
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