|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000034 ID=TCONS_00000034|Name=TCONS_00000034|organism=Clytia hemisphaerica|type=transcript|length=2309bp
TCTAAGATTCAATTTATCATTAAAATGGGTTGCAGATGTGACAGTAATGC
ATGTGGATCCTGTGCTTGTTCTAAAGCCAACGAATTATGTACACCCCAAT
GTCATGGTGGTCAAAGTATTGATAATGTGCCATGTATGAATACAGAAGCA
GGCAAGaaagtaaaaacaatgaaaatcaaagaTGTCAGAACAGCTCTGAT
TGCCAATGGACTTTCAATTATCGGGGATAGAGGTGAATTGTACAAACGCT
TAGCTGACCAAATCAGAAAATCTGGTGCATCAAACTCCACATCAAATGAA
AGTGGATCTACATCAGCTTCCGGAAAATCAAACGAAGGGGATGCAAAGAA
CGAattattcaaaatcattttGGAAAATGAGGACAACTATCCTTTTATTC
TATCACTTAGCGGTAAAAAGATCCAAGCCAATTCTGGAAAAGCTGAATTA
CGCAAAGCTTACCTGTTACTGAGCTCTAAAGTGCATCCCGATAAGAATCC
AGGTAACCAGGAAGCTGTCAAAGCTTTCCAAGCACTTCTATCTGCCTATG
AACGATTAGCGAACCCTGAGAAGTTCGCTGACGAGGACGACGAGGACGAG
AAGCCAGCTAAAAAGCGACAGAAAACTGAACGATTCACCAGATCTAATGG
TGGTTGCTTCAAAACCAAAGTCAAGTGTCCTCAATGTAAAACAGAATGGG
GTTTACCTGTTGTCGGACTAGAGGATTGTGCTTATAATTTCATTATGACT
GGATTAAAGCAGTATATTTGTCACGTGTGCTCCTGTCAATTTGGTTGTAT
GACTGCATTGCATTACTGCCCGCATTGTCGTAAAGAATTTTCGTATGATC
CGGATGATTATCACCGTAAAATTACTTGTGGCAACATTAAATGTAATAAA
GAATTTGGTTTTTGGATGTTCAAAGTATCAGAGCGACGCGAAAAGGAGGT
CAGACAGGAGGCTAAGGAGTTACATGAATCACGGTTGAAGAAAGCTGCTC
AGAAGAAGCGTCGTGCTCAAAGGGCCGGTAACCGCGATGCTGGCGAGGAT
GGGGCCAGTAAACAGCGTCTTCAGGAACAACTGTTTCTTCTGCAATTACG
GGATTCGTGTCCTCGATGCGGCTGGGAATTAGAACGCGGAGAAGGCCATG
ATGAGGCACAACAGCATTTGACAGAATGTAATGATAAAGTGAAGATCCGT
GAGTACCAACAAGAGGTCGCGGACGAAGAAGCTGAGGCTAGGTCTAAGTT
AGATGCTAAAGCAAGTGAAGAAGAAATACTTGCATTAAAGCAATGGGAAT
CGAACGGGCGCCAATTAGGTCAACTATGGATGCTCAGTGACACAATGCTT
AAAAGACAATGCGAAACTTTCAATCTTCCAATCAAAGGTAAACGCCATGA
GTTGATTCAACGATTGTCTCAACATATTCGCTCACAAGCACGCTTGATGA
TCACTGACGGGAAAACGGATGTCTCTGGTGGAGCCTCAGGTTATGATGCG
TGCAGCTTAAAGCATGCAGATGCTGAAGATCTACCTCAGAATCTGAACTC
CCTCGATAAGGAGCAATTACAAGATCTGTGTGCAAGTTATGGAGTCAAGT
TCAATCCTCGTAAAGACGTGAAGAAAGATTTGATTAAGAAATTTGAGATG
ACGCGTTACAAAGGCACCGAACAACAACTTATGTTGGGATATGgcgaaga
gaaaaacaaaagaagagctGCTATTAAAGACAAAGATGAAGACTATGTAC
CAGATGAGTAGGAACTAGTCTCTTGGGACTTGTATTTCCTAAAATAGTCT
TGAACTGCTATCAGCTTAAAATGGGCTCCGGAAAGTGCCTGGTAATTCGA
GAAAATTGTAATAAGTCAAAGGTTTGAAGACTTGGATTTTAACGTTGGAA
AaccattttttggtattttgaacacggtttaaaaaaatctttattagTGA
ACTTATTCCTGATGAAAACAAGTATTGAGGCAGGAATTGTTacagaaata
ttaaaaaaatcttacTAGTTAGAGGATTGAGGCTATGAACTTTATGCTTC
CTTTTGTTTTTATCGTGCTACTGTGTACTCAGTTGTTATTATTATTGGCA
ATGGTATCCTTGGTTACTCCGAAAGAGAGCTTCTATGAAATAACCGGACA
AAAATTATACACGtttcaagaaattttattttattttccgtTAAAGCTat
ttatatttttcactttctcattttgattttattgtaaTATATAAGAAAAC
GATACAATCACCTTTTATGTAAACATATCAAGTCCTATCAAGAACTTCAT
TGATCGAGC Run BLAST on NCBI protein sequence of TCONS_00000034-protein >TCONS_00000034-protein ID=TCONS_00000034-protein|Name=TCONS_00000034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
SKIQFIIKMGCRCDSNACGSCACSKANELCTPQCHGGQSIDNVPCMNTEA
GKKVKTMKIKDVRTALIANGLSIIGDRGELYKRLADQIRKSGASNSTSNE
SGSTSASGKSNEGDAKNELFKIILENEDNYPFILSLSGKKIQANSGKAEL
RKAYLLLSSKVHPDKNPGNQEAVKAFQALLSAYERLANPEKFADEDDEDE
KPAKKRQKTERFTRSNGGCFKTKVKCPQCKTEWGLPVVGLEDCAYNFIMT
GLKQYICHVCSCQFGCMTALHYCPHCRKEFSYDPDDYHRKITCGNIKCNK
EFGFWMFKVSERREKEVRQEAKELHESRLKKAAQKKRRAQRAGNRDAGED
GASKQRLQEQLFLLQLRDSCPRCGWELERGEGHDEAQQHLTECNDKVKIR
EYQQEVADEEAEARSKLDAKASEEEILALKQWESNGRQLGQLWMLSDTML
KRQCETFNLPIKGKRHELIQRLSQHIRSQARLMITDGKTDVSGGASGYDA
CSLKHADAEDLPQNLNSLDKEQLQDLCASYGVKFNPRKDVKKDLIKKFEM
TRYKGTEQQLMLGYGEEKNKRRAAIKDKDEDYVPDE Run BLAST on NCBI transcript from alignment at sc0000001:933755..936942+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000034 ID=TCONS_00000034|Name=TCONS_00000034|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at sc0000001:933755..936942+ (Clytia hemisphaerica)
TCTAAGATTCAATTTATCATTAAAATGGGTTGCAGATGTGACAGTAATGC
ATGTGGATCCTGTGCTTGTTCTAAAGCCAACGAATTATGTACACCCCAAT
GTCATGGTGGTCAAAGTATTGATAATGTGCCATGTATGAATACAGAAGCA
GGCAAGaaagtaaaaacaatgaaaatcaaagaTGTCAGAACAGCTCTGAT
TGCCAATGGACTTTCAATTATCGGGGATAGAGGTGAGGTATtgctaattt
ttcaaaatccaaatctATGGAGACAATCTCATTTGAGAGAATTTCGTTTG
CTTATTGTTTGTGTTGTGTAGACAAAACCTTTATTTAGAAGCCTACTGAA
AAATATACATTCAACCAATAAAGGAGACTCTTATTATTTCATTCTCAAGG
ACACATTATTTAGCCAATAAGATTCCAGGTCTGCTATAATGGAGATGTTT
GAATGTTTGTCTTGCTTTGCTTGCTTTAAAGCACAATGTGTCTTGGTTAT
CCACAGATTTGTCTGTAGATTTTCATATTGTATCATATTTTGACGTAAAG
AAAATAGTGTTCCCAAGTTCAACATTTGGTAAAAAACTATTATTAGtttg
ttctctttttttatTGCTTCGTACCAAATTCTTTATCAATGGAAATGGAA
GCCTATGATATTTGACTTTTTAGGTGAATTGTACAAACGCTTAGCTGACC
AAATCAGAAAATCTGGTGCATCAAACTCCACATCAAATGAAAGTGGATCT
ACATCAGCTTCCGGAAAATCAAACGAAGGGGATGCAAAGAACGAattatt
caaaatcattttGGAAAATGAGGACAACTATCCTTTTATTCTATCACTTA
GCGGTAAAAAGATCCAAGCCAATTCTGGAAAAGCTGAATTACGCAAAGCT
TACCTGTTACTGAGCTCTAAAGTGCATCCCGATAAGAATCCAGGTAACCA
GGAAGCTGTCAAAGCTTTCCAAGCACTTCTATCTGCCTATGAACGATTAG
CGAACCCTGAGAAGTTCGCTGACGAGGACGACGAGGACGAGAAGCCAGCT
AAAAAGCGACAGAAAACTGAACGATTCACCAGATCTAATGGTGGTTGCTT
CAAAACCAAAGTCAAGTGTCCTCAATGTAAAACAGAATGGGGTTTACCTG
TTGTCGGACTAGAGGATTGTGCTTATAATTTCATTATGACTGGATTAAAG
CAGTATATTTGTCACGTGTGCTCCTGTCAATTTGGTTGTATGACTGCATT
GCATTACTGCCCGCATTGTCGTAAAGAATTTTCGTATGATCCGGATGATT
ATCACCGTAAAATTACTTGTGGCAACATTAAATGTAATAAAGAATTTGGT
TTTTGGATGTTCAAAGTATCAGAGCGACGCGAAAAGGAGGTCAGACAGGA
GGCTAAGGAGTTACATGAATCACGGTTGAAGAAAGCTGCTCAGAAGAAGC
GTCGTGCTCAAAGGGCCGGTAACCGCGATGCTGGCGAGGATGGGGCCAGT
AAACAGCGTCTTCAGGAACAACTGTTTCTTCTGCAATTACGGGATTCGTG
TCCTCGATGCGGCTGGGAATTAGAACGCGGAGAAGGCCATGATGAGGCAC
AACAGCATTTGACAGAATGTAATGATAAAGTGAAGATCCGTGAGTACCAA
CAAGAGGTCGCGGACGAAGAAGCTGAGGCTAGGTCTAAGTTAGATGCTAA
AGCAAGTGAAGAAGAAATACTTGCATTAAAGCAATGGGAATCGAACGGGC
GCCAATTAGGTCAACTATGGATGCTCAGTGACACAATGCTTAAAAGACAA
TGCGAAACTTTCAATCTTCCAATCAAAGGTAAACGCCATGAGTTGATTCA
ACGATTGTCTCAACATATTCGCTCACAAGCACGCTTGATGATCACTGACG
GGAAAACGGATGTCTCTGGTGGAGCCTCAGGTTATGATGCGTGCAGCTTA
AAGCATGCAGATGCTGAAGATCTACCTCAGAATCTGAACTCCCTCGATAA
GGAGCAATTACAAGATCTGTGTGCAAGTTATGGAGTCAAGTTCAATCCTC
GTAAAGACGTGAAGAAAGATTTGATTAAGAAATTTGAGATGACGCGTTAC
AAAGGCACCGAACAACAACTTATGTTGGGATATGgcgaagagaaaaacaa
aagaagagctGCTATTAAAGACAAAGATGAAGACTATGTACCAGATGAGT
AGGAACTAGTCTCTTGGGACTTGTATTTCCTAAAATAGTCTTGAACTGCT
ATCAGCTTAAAATGGGCTCCGGAAAGTGCCTGGTAATTCGAGAAAATTGT
AATAAGTCAAAGGTTTGAAGACTTGGATTTTAACGTTGGAAAaccatttt
ttggtattttgaacacggtttaaaaaaatctttattagTGAACTTATTCC
TGATGAAAACAAGTATTGAGGCAGGAATTGTTacagaaatattaaaaaaa
tcttacTAGTTAGAGGATTGAGGCTATGAACTTTATGCTTCCTTTTGTTT
TTATCGTGCTACTATGTACTcagttgttattattattattggtaATGGTA
TCCTTGGTTACCCCGAAAGAGATTCTATGGGAAATAACCGTACNGGATGA
ATAGGAACTAGTCTCTTGggactttttcttttattcctTCCATTTCCCTG
GAAGATAATCTTGAACTTCTATGAGCTTTTATGAGCTTTTGATAGTCCCT
GGTAGCTGAAGAAAACGAGAAAATTGCAATGAATCAGAGGTTTTAGGCTT
GGATTACAACAAACGAAAAAATTTTccttctgttttgtttttggtatttt
gaacACGGTACTAAAAACTTCGTTAATGAACTTATTCCTGATGAAAACAA
GTATTGAGGCAGGAATTGTTACAGAAAGATTAAACAAATGTTACTAGTTA
GAGAATTGAGGCTATGAACTTTATGCTTCCTTTTGTTTTTATCGTGCTAC
TGTGTACTCAGTTGTTATTATTATTGGCAATGGTATCCTTGGTTACTCCG
AAAGAGAGCTTCTATGAAATAACCGGACAAAAATTATACACGtttcaaga
aattttattttattttccgtTAAAGCTatttatatttttcactttctcat
tttgattttattgtaaTATATAAGAAAACGATACAATCACCTTTTATGTA
AACATATCAAGTCCTATCAAGAACTTCATTGATCGAGC Coding sequence (CDS) from alignment at sc0000001:933755..936942+ >TCONS_00000034 ID=TCONS_00000034|Name=TCONS_00000034|organism=Clytia hemisphaerica|type=CDS|length=3522bp|location=Sequence derived from alignment at sc0000001:933755..936942+ (Clytia hemisphaerica)
TCTAAGATTCAATTTATCATTAAAATGGGTTGCAGATGTGACAGTAATGC
ATGTGGATCCTGTGCTTGTTCTAAAGCCAACGAATTATGTACACCCCAAT
GTCATGGTGGTCAAAGTATTGATAATGTGCCATGTATGAATACAGAAGCA
GGCAAGaaagtaaaaacaatgaaaatcaaagaTGTCAGAACAGCTCTGAT
TGCCAATGGACTTTCAATTATCGGGGATAGAGGTGAATTGTACAAACGCT
TAGCTGACCAAATCAGAAAATCTGGTGCATCAAACTCCACATCAAATGAA
AGTGGATCTACATCAGCTTCCGGAAAATCAAACGAAGGGGATGCAAAGAA
CGAattattcaaaatcattttGGAAAATGAGGACAACTATCCTTTTATTC
TATCACTTAGCGGTAAAAAGATCCAAGCCAATTCTGGAAAAGCTGAATTA
CGCAAAGCTTACCTGTTACTGAGCTCTAAAGTGCATCCCGATAAGAATCC
AGGTAACCAGGAAGCTGTCAAAGCTTTCCAAGCACTTCTATCTGCCTATG
AACGATTAGCGAACCCTGAGAAGTTCGCTGACGAGGACGACGAGGACGAG
AAGCCAGCTAAAAAGCGACAGAAAACTGAACGATTCACCAGATCTAATGG
TGGTTGCTTCAAAACCAAAGTCAAGTGTCCTCAATGTAAAACAGAATGGG
GTTTACCTGTTGTCGGACTAGAGGATTGTGCTTATAATTTCATTATGACT
GGATTAAAGCAGTATATTTGTCACGTGTGCTCCTGTCAATTTGGTTGTAT
GACTGCATTGCATTACTGCCCGCATTGTCGTAAAGAATTTTCGTATGATC
CGGATGATTATCACCGTAAAATTACTTGTGGCAACATTAAATGTAATAAA
GAATTTGGTTTTTGGATGTTCAAAGTATCAGAGCGACGCGAAAAGGAGGT
CAGACAGGAGGCTAAGGAGTTACATGAATCACGGTTGAAGAAAGCTGCTC
AGAAGAAGCGTCGTGCTCAAAGGGCCGGTAACCGCGATGCTGGCGAGGAT
GGGGCCAGTAAACAGCGTCTTCAGGAACAACTGTTTCTTCTGCAATTACG
GGATTCGTGTCCTCGATGCGGCTGGGAATTAGAACGCGGAGAAGGCCATG
ATGAGGCACAACAGCATTTGACAGAATGTAATGATAAAGTGAAGATCCGT
GAGTACCAACAAGAGGTCGCGGACGAAGAAGCTGAGGCTAGGTCTAAGTT
AGATGCTAAAGCAAGTGAAGAAGAAATACTTGCATTAAAGCAATGGGAAT
CGAACGGGCGCCAATTAGGTCAACTATGGATGCTCAGTGACACAATGCTT
AAAAGACAATGCGAAACTTTCAATCTTCCAATCAAAGGTAAACGCCATGA
GTTGATTCAACGATTGTCTCAACATATTCGCTCACAAGCACGCTTGATGA
TCACTGACGGGAAAACGGATGTCTCTGGTGGAGCCTCAGGTTATGATGCG
TGCAGCTTAAAGCATGCAGATGCTGAAGATCTACCTCAGAATCTGAACTC
CCTCGATAAGGAGCAATTACAAGATCTGTGTGCAAGTTATGGAGTCAAGT
TCAATCCTCGTAAAGACGTGAAGAAAGATTTGATTAAGAAATTTGAGATG
ACGCGTTACAAAGGCACCGAACAACAACTTATGTTGGGATATGgcgaaga
gaaaaacaaaagaagagctGCTATTAAAGACAAAGATGAAGACTATGTAC
CAGATGAGTAGTCTAAGATTCAATTTATCATTAAAATGGGTTGCAGATGT
GACAGTAATGCATGTGGATCCTGTGCTTGTTCTAAAGCCAACGAATTATG
TACACCCCAATGTCATGGTGGTCAAAGTATTGATAATGTGCCATGTATGA
ATACAGAAGCAGGCAAGaaagtaaaaacaatgaaaatcaaagaTGTCAGA
ACAGCTCTGATTGCCAATGGACTTTCAATTATCGGGGATAGAGGTGAATT
GTACAAACGCTTAGCTGACCAAATCAGAAAATCTGGTGCATCAAACTCCA
CATCAAATGAAAGTGGATCTACATCAGCTTCCGGAAAATCAAACGAAGGG
GATGCAAAGAACGAattattcaaaatcattttGGAAAATGAGGACAACTA
TCCTTTTATTCTATCACTTAGCGGTAAAAAGATCCAAGCCAATTCTGGAA
AAGCTGAATTACGCAAAGCTTACCTGTTACTGAGCTCTAAAGTGCATCCC
GATAAGAATCCAGGTAACCAGGAAGCTGTCAAAGCTTTCCAAGCACTTCT
ATCTGCCTATGAACGATTAGCGAACCCTGAGAAGTTCGCTGACGAGGACG
ACGAGGACGAGAAGCCAGCTAAAAAGCGACAGAAAACTGAACGATTCACC
AGATCTAATGGTGGTTGCTTCAAAACCAAAGTCAAGTGTCCTCAATGTAA
AACAGAATGGGGTTTACCTGTTGTCGGACTAGAGGATTGTGCTTATAATT
TCATTATGACTGGATTAAAGCAGTATATTTGTCACGTGTGCTCCTGTCAA
TTTGGTTGTATGACTGCATTGCATTACTGCCCGCATTGTCGTAAAGAATT
TTCGTATGATCCGGATGATTATCACCGTAAAATTACTTGTGGCAACATTA
AATGTAATAAAGAATTTGGTTTTTGGATGTTCAAAGTATCAGAGCGACGC
GAAAAGGAGGTCAGACAGGAGGCTAAGGAGTTACATGAATCACGGTTGAA
GAAAGCTGCTCAGAAGAAGCGTCGTGCTCAAAGGGCCGGTAACCGCGATG
CTGGCGAGGATGGGGCCAGTAAACAGCGTCTTCAGGAACAACTGTTTCTT
CTGCAATTACGGGATTCGTGTCCTCGATGCGGCTGGGAATTAGAACGCGG
AGAAGGCCATGATGAGGCACAACAGCATTTGACAGAATGTAATGATAAAG
TGAAGATCCGTGAGTACCAACAAGAGGTCGCGGACGAAGAAGCTGAGGCT
AGGTCTAAGTTAGATGCTAAAGCAAGTGAAGAAGAAATACTTGCATTAAA
GCAATGGGAATCGAACGGGCGCCAATTAGGTCAACTATGGATGCTCAGTG
ACACAATGCTTAAAAGACAATGCGAAACTTTCAATCTTCCAATCAAAGGT
AAACGCCATGAGTTGATTCAACGATTGTCTCAACATATTCGCTCACAAGC
ACGCTTGATGATCACTGACGGGAAAACGGATGTCTCTGGTGGAGCCTCAG
GTTATGATGCGTGCAGCTTAAAGCATGCAGATGCTGAAGATCTACCTCAG
AATCTGAACTCCCTCGATAAGGAGCAATTACAAGATCTGTGTGCAAGTTA
TGGAGTCAAGTTCAATCCTCGTAAAGACGTGAAGAAAGATTTGATTAAGA
AATTTGAGATGACGCGTTACAAAGGCACCGAACAACAACTTATGTTGGGA
TATGgcgaagagaaaaacaaaagaagagctGCTATTAAAGACAAAGATGA
AGACTATGTACCAGATGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000034-exon-sc0000001-1491911889:933755..933986 | TCONS_00000034-exon-sc0000001-1491911889:933755..933986 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1510915933:933755..933986 | TCONS_00000034-exon-sc0000001-1510915933:933755..933986 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1575043694:933755..933986 | TCONS_00000034-exon-sc0000001-1575043694:933755..933986 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1491911889:934428..936226 | TCONS_00000034-exon-sc0000001-1491911889:934428..936226 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1510915933:934428..936226 | TCONS_00000034-exon-sc0000001-1510915933:934428..936226 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1575043694:934428..936226 | TCONS_00000034-exon-sc0000001-1575043694:934428..936226 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1491911889:936665..936942 | TCONS_00000034-exon-sc0000001-1491911889:936665..936942 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1510915933:936665..936942 | TCONS_00000034-exon-sc0000001-1510915933:936665..936942 | Clytia hemisphaerica | exon |
| TCONS_00000034-exon-sc0000001-1575043694:936665..936942 | TCONS_00000034-exon-sc0000001-1575043694:936665..936942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:933755..936942 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
