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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000030 ID=TCONS_00000030|Name=TCONS_00000030|organism=Clytia hemisphaerica|type=transcript|length=3562bpRun BLAST on NCBI protein sequence of TCONS_00000030-protein >TCONS_00000030-protein ID=TCONS_00000030-protein|Name=TCONS_00000030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=714bp MGENGSVNGDKVGGRNVNGVDWNQYGLASDTNHPAALNDNGSKGFLSSYPRun BLAST on NCBI transcript from alignment at sc0000001:779125..805026+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000030 ID=TCONS_00000030|Name=TCONS_00000030|organism=Clytia hemisphaerica|type=transcript|length=25902bp|location=Sequence derived from alignment at sc0000001:779125..805026+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:779125..805026+ >TCONS_00000030 ID=TCONS_00000030|Name=TCONS_00000030|organism=Clytia hemisphaerica|type=CDS|length=25740bp|location=Sequence derived from alignment at sc0000001:779125..805026+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000030 vs. Swiss-Prot (Human)
Match: S12A8 (Solute carrier family 12 member 8 OS=Homo sapiens GN=SLC12A8 PE=2 SV=4) HSP 1 Score: 417.927 bits (1073), Expect = 6.230e-130 Identity = 266/710 (37.46%), Postives = 405/710 (57.04%), Query Frame = 2
Query: 515 EVKELFEHEQENGSETDQEPWWKSNFFVTKKVLFGTWDGVFTSCVMNIVGVVVFLRTGWMVGXXXXXXXXXXXXXXXXXXXXTLMSAVGVSDRCDLGHGGVYFIXXXXXXXXXXXXXXXMYCVGHCIATSLYCTGFSESMVGLMNWDHPWAIRLVSIITLVVLVGIALSGVKWIVRFQLVLIIILAIAMCDFILGTLAQEKPESGFSGFKNANFVENLKSDFNKDISFFVVFGVFFPTACGVLAGVNMSGDLKEPGQNIPEGSVAALALCGFIYTILVLFLGSTCTREALQTDSLIMEKISLVGALLIFGLFVAALSSILGGLVGPPRVLQRIAEDNVLPILKPFAELSGGNKEPRNATLLCASIALIFIFVGNLNQLAPIVTMPFLMTYTIINYAYFAMAM--------------------------------SYDVKLKQTARVEGRYNSPTKNNNKSVEMCDYGSTTVTKRRTWENGNEYHELTSDDGGDVVAEEETVIDNSKTLEVKEPPDYDTSQRESGLAVSDHDEELNVESNRVSSEDTT---SYQRQ---------RSLNEGQYLE-FIHE----RNTNTLYGRLCNRWVSLFTSFVCLVLSFCVSWAYALANLSITLILFIFVSQARPGLSPGVASDFNFGVWLCTLLPRDKKD--EEQEHVIIQSSQVPYGISMHVITQENMDYEHRDRKHLASTINKPQ 2491
+V+ELF + + +PWWK+ F+ + VLFGTWDGVFTSC++NI GVV+FLRTGW+VG G L + ++ LVALVT++S +GV +R +G GGVY +++ VLGG+ GGT+GL+Y G C+A ++Y TGF+ES+ L+ + WA+R +S+ L+ L+GI L+GVKWI+R QL+L+ +LA++ DF++G+ PE GF G+ N D++ SFF VFGVFFP A GV+AG NM GDL+EP +IP GS+AA+ + F+Y I V LG+ CTREAL+ D LI EK+SL+G L + GL++++L+S +GGL G PR+LQ IA++ V+P L + G NK P A L + + + F+FVG +N LAPIVT+ F++TY ++Y+YF+++M SY + +EG TK+ ++ +++ ++ ++ GN E S A ++T+ D S L++K PP + + A S +E SE T +Y Q S E +L+ + E R + + Y +CN WVSL + L++ F + W Y L N+ + I++ ++ +A PGL G AS+F+F W+ +LL + QE +I+ S + M +TQEN D+ RDR H +S +N+ Q
Sbjct: 6 QVQELFHEAAQQDALAQPQPWWKTQLFMWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTGVLLGMFLVSFVILVALVTVLSGIGVGERSSIGSGGVYSMISSVLGGQTGGTIGLLYVFGQCVAGAMYITGFAESISDLLGLGNIWAVRGISVAVLLALLGINLAGVKWIIRLQLLLLFLLAVSTLDFVVGSFTHLDPEHGFIGYSPELLQNNTLPDYSPGESFFTVFGVFFPAATGVMAGFNMGGDLREPAASIPLGSLAAVGISWFLYIIFVFLLGAICTREALRYDFLIAEKVSLMGFLFLLGLYISSLASCMGGLYGAPRILQCIAQEKVIPALACLGQGKGPNKTPVAAICLTSLVTMAFVFVGQVNVLAPIVTINFMLTYVAVDYSYFSLSMCSCSLTPVPEPVLREGAEGLHCSEHLLLEKAPSYGSEGPAQRVLEGTLLEFTKDMDQLLQLTRKLESSQPRQ---GEGNRTPE--SQKRKSKKATKQTLQD-SFLLDLKSPPSFPVEISDRLPAASWEGQESCWNKQTSKSEGTQPEGTYGEQLVPELCNQSESSGEDFFLKSRLQEQDVWRRSTSFYTHMCNPWVSLLGAVGSLLIMFVIQWVYTLVNMGVAAIVYFYIGRASPGLHLGSASNFSFFRWMRSLLLPSCRSLRSPQEQIILAPSLAKVDMEMTQLTQENADFATRDRYHHSSLVNREQ 709 The following BLAST results are available for this feature:
BLAST of TCONS_00000030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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