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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000015 ID=TCONS_00000015|Name=TCONS_00000015|organism=Clytia hemisphaerica|type=transcript|length=1982bp
GCTGTTGAGTAGCATAAAGCAACTGCTGCTTTGTGTATCGTACCAGTGCT
TTCAGATCTTAATAAAACTGTTTATCATATACCTTTAACAGGTATATtat
acaacaaaatataatGTCATCGCACAAGGCAGTAGAGCATACAGCTGCAA
ATCTGGATGGTTTATGGACAGTAATAGCAAAAACGAGGAACTTTGATAAT
GAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCTGG
TTTGGTTGAATTTTATGAATTGTTTATGGAATGTTTGTACAAGTTAAAGG
GGATTCCAATTATCGGTTTTTCACATGCAGGACATTCACCGATCCACCCA
TACACAGATGAACCAATGAGAACTCCTCCATTAACCTTGCAAGAACAAAT
TCAACACAAGAAGGACTGTGTCCGACAATTCATTCCTGACGACTGCAATA
TCATCTTTATCGGACATTCCATAGGAGCTTATATTATTCTACAGCTTATG
GACCATATACCAGAAAGATCGCTTCATGGTATATTACTCTTCCCCACCAT
CACGAACATGATTGGAACAGTTGACGGAAAATTCTGGAATCTGATAACTT
CATATCTCAAACTCCCTTTACTATGGACTGCATATTTTTCCTCTTATCTA
CCTTACGCCCTACAAGATGTTTTGATACGATGGCGTGCAAAATGGCGGCA
AATTGACGCCCCGATCGTACCAGTGTGCAGACGATGTGTCTCTTGGGACG
TTTTAAGTCAAGGTTTCCGTATGGTCGAATGTGAGTTAGTAGAAGTCAAA
ACTTTGAATCCGGAATTATCCCGGATTATACGACGATATTCCAATAAATT
GACGGTTTATTATGGTGACGGTGACGCATGGACgcctttttctttttatg
aggAATTTATACAGAAATTTCCTGAAGTGAAAACTTTCTACGGACGTGAT
GGTTTTAAACATGATTTTGTACTTGACTCTTCGGAAGGTGTAGCGAGGCT
ATGTAATAAGTTTATTGAGAAGTTATGATAGTTCATGATTATAAGcatct
tttacatttttatcataaCCTAGCTTTAACTTCAGATATCCTCTATGTAT
AAGACACAGATTTGCAGCCGTTATaagtttttttacaatatttggAGGAT
GTACCGTGTTTCAATCCCGACTTATGGAAGATTTCGAAAATCGTTAAAAC
TCATTTTCGGGTCAATAACTTTTTGCCCAAGGTGTAAAAATCGACTCTAC
CCCACATTCGAAAGcagataaaattatctttccaacggtgtctAGAAACC
TTCTATTCGaattttttctaggttgacTCTATTTTCGACAAAATTCTACA
GGACTAAAACTGTAAAAGTTGACATTccgttttataaaaatatacctTTT
CGACTACTAAAATCTATTgctagtttgagtaaagaaaattaATACTCAAA
GTTTTATGCCATTCTTTAGTAGTATACTCAAACTAGTATGAAGCTTGTCA
TTAATATTGATCACTGTTATTAGTTTTCGCTTACACAAGGAATGTATAGA
ATTTATTCTTGaattttaaatatctttttggGCGATATCGTGTAACCCTG
TATTAATGATTCAATACTCTGACCACTCTAGAACCATCTATGTAACATGG
TCAAAGGAATTTTTGTTTCTAGTTAATTTTTAAATTGTTATGAGAATTAT
TAGATGATGATGTTCATGTAAATAGATGAATTTGtctttaaaacttttat
ttCGCATTTTATGAGAGattttatttctgattttttaaattattgcTCGG
GTCTAACGGAAATCTTTAGGTCTCTAAAATGGCAATTTAATGCTTCGAAA
ATACTACCTTTTGACGTGagttttctcgaattttcaacCATTGGAGACCG
AAATAATCGCATGAAAACTCTTAAATTTGGTATCCCTTAGActctttaag
tgccaatgtcgagtATATTGGACATATGGGCT Run BLAST on NCBI transcript from alignment at sc0000001:328739..332443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000015 ID=TCONS_00000015|Name=TCONS_00000015|organism=Clytia hemisphaerica|type=transcript|length=3705bp|location=Sequence derived from alignment at sc0000001:328739..332443+ (Clytia hemisphaerica)
GCTGTTGAGTAGCATAAAGCAACTGCTGCTTTGTGTATCGTACCAGTGCT
TTCAGATCTTAATAAAACTGTTTATCATATACCTTTAACAGGTATATtat
acaacaaaatataatGTCATCGCACAAGGCAGTAGAGCATACAGCTGCAA
ATCTGGATGGTTTATGGACAGTAATAGCAAAAACGAGGAACTTTGATAAT
GAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCTGG
TTTGGTTGAATTTTATGAATTGTTTATGGAATGTTTGTACAAGTTAAAGG
GGATTCCAATTATCGGTTTTTCACATGCAGGTATAAATggatttctcttt
tttataagaaccattcAATTTTTATTAAGGGTCAGTTACTTTTTTGGATG
TACTTTGAGTCacaaattgtaaattttcaaaaactctcTGCGATTCCAGT
CTTTTTCGTAATGTATGGTATTTTTAAGCCTGCCTTACTGTTCTTATATA
AAGTGTGAATactctttttcttaaaattaacATGAAGAGAAAAAGTAAAT
CCAATTCTGCTCATCATGTTGTTTCGATGTGATCCTGATGTGAACATCGA
AAATCTAAAAGCTAACTAAGCAAGTTTCACCCATTCTCtatcaaatacac
gtttttttataataacatccATAATATTTTTAGCCTTTGGGTGTTCTTCt
aagctttttgagtttttaagctgaaaaaaaacgttattaaaatgttctga
attttaaaccattttgtgagtgtttttttcACACTTCCTAACTTGTTCAT
AATATCTTGGCCATCAAACCCTTTTgttcatatagtttgttcttatgtga
aacaatgaaacagaaaaaacaaaaacagtttttttgtaCTAATAGTTTCA
CAACCTTCTTCTGGGTTGATCATCAGCAAactctttttgtttgtttgctg
ATGATCAACCCAGAAAAGGATTGCGAAAATATCAgtacaaaaaactgttt
ttgtttttttctgtttgacTTAAAAATTTCTACTATGAATAAGAAGATTC
TCCacaagtttgttcttataaaaaacgtgttttcCACATCTCAGGACATT
CACCGATCCACCCATACACAGATGAACCAATGAGAACTCCTCCATTAACC
TTGCAAGAACAAATTCAACACAAGAAGGACTGTGTCCGACAATTCATTCC
TGACGACTGCAATATCATCTTTATCGGACATTCCATAGGAGCTTATATTA
TTCTACAGCTTATGGACCATATACCAGAAAGGTGAATACACTCTTCTCAA
AATAATAAGGGGCAAGGCTTCGGATCCGTAGAATCTTTCGTAGGANattg
tacttaacaacatatccaaaaatgaaaaaaatctaagtttcaaactattg
gaactgccccaaactgccccattcttaaaaaaactggctcttaaaaattt
ctactatgtatggaGCACTCTANtctttttgtttgtttgctgATGATCAA
CCCAGAAAAGGATTGCGAAAATATCAgtacaaaaaactgtttttgttttt
ttctgtttgacTTAAAAATTTCTACTATGAATAAGAAGATTCTCCacaag
tttgttcttataaaaaacgtgttttcCACATCTCAGGACATTCACCGATC
CACCCATACACAGATGAACCAATGAGAACTCCTCCATTAACCTTGCAAGA
ACAAATTCAACACAAGAAGGACTGTGTCCGACAATTCATTCCTGACGACT
GCAATATCATCTTTATCGGACATTCCATAGGAGCTTATATTATTCTACAG
CTTATGGACCATATACCAGAAAGGTGAATACACTCTTCTCAAAATAATAA
GGGGCAAGGCTTCGGATCCGTAGAATCTTTCGTAGGACACATTCGCGTGT
GATTGGTTTGAAAGTAGATAGAATTTCGAGACTTTTTTGAGAAGGGGCAT
AAAAGGCTTGGCAACCAAAAGTTTTTAGGGCGATTTTTTATCCCCCGCCA
AATAGTAAAATTTGAcgattttttaatgtttttactGAGTTTTGATTCTC
CTACttggatttttaaaagttaaaaccctttgttgataattttaaaaaat
actttgactTTGAAATAGTTTGTTTGACCTGAAAATATGAAAGATAATGA
AGGAAAAGTGTTTGCTCAAAACTTGTTAACGATTATTCCTAAGATGATAG
TGGAGAGACTATAATACATTTTAACACCTATCTTTTATAGATCGCTTCAT
GGTATATTACTCTTCCCCACCATCACGAACATGATTGGAACAGTTGACGG
AAAATTCTGGAATCTGATAACTTCATATCTCAAACTCCCTTTACTATGGA
CTGCATATTTTTCCTCTTATCTACCTTACGCCCTACAAGATGTTTTGATA
CGATGGCGTGCAAAATGGCGGCAAATTGACGCCCCGATCGTACCAGTGTG
CAGACGATGTGTCTCTTGGGACGTTTTAAGTCAAGGTTTCCGTATGGTCG
AATGTGAGTTAGTAGAAGTCAAAACTTTGAATCCGGAATTATCCCGGATT
ATACGACGATATTCCAATAAATTGACGGTTTATTATGGTGACGGTGACGC
ATGGACgcctttttctttttatgaggAATTTATACAGAAATTTCCTGAAG
TGAAAACTTTCTACGGACGTGATGGTTTTAAACATGATTTTGTACTTGAC
TCTTCGGAAGGTGTAGCGAGGCTATGTAATAAGTTTATTGAGAAGTTATG
ATAGTTCATGATTATAAGcatcttttacatttttatcataaCCTAGCTTT
AACTTCAGATATCCTCTATGTATAAGACACAGATTTGCAGCCGTTATaag
tttttttacaatatttggAGGATGTACCGTGTTTCAATCCCGACTTATGG
AAGATTTCGAAAATCGTTAAAACTCATTTTCGGGTCAATAACTTTTTGCC
CAAGGTGTAAAAATCGACTCTACCCCACATTCGAAAGcagataaaattat
ctttccaacggtgtctAGAAACCTTCTATTCGaattttttctaggttgac
TCTATTTTCGACAAAATTCTACAGGACTAAAACTGTAAAAGTTGACATTc
cgttttataaaaatatacctTTTCGACTACTAAAATCTATTgctagtttg
agtaaagaaaattaATACTCAAAGTTTTATGCCATTCTTTAGTAGTATAC
TCAAACTAGTATGAAGCTTGTCATTAATATTGATCACTGTTATTAGTTTT
CGCTTACACAAGGAATGTATAGAATTTATTCTTGaattttaaatatcttt
ttggGCGATATCGTGTAACCCTGTATTAATGATTCAATACTCTGACCACT
CTAGAACCATCTATGTAACATGGTCAAAGGAATTTTTGTTTCTAGTTAAT
TTTTAAATTGTTATGAGAATTATTAGATGATGATGTTCATGTAAATAGAT
GAATTTGtctttaaaacttttatttCGCATTTTATGAGAGattttatttc
tgattttttaaattattgcTCGGGTCTAACGGAAATCTTTAGGTCTCTAA
AATGGCAATTTAATGCTTCGAAAATACTACCTTTTGACGTGagttttctc
gaattttcaacCATTGGAGACCGAAATAATCGCATGAAAACTCTTAAATT
TGGTATCCCTTAGActctttaagtgccaatgtcgagtATATTGGACATAT
GGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000015-exon-sc0000001-1491911889:328739..329068 | TCONS_00000015-exon-sc0000001-1491911889:328739..329068 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1510915933:328739..329068 | TCONS_00000015-exon-sc0000001-1510915933:328739..329068 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1575043694:328739..329068 | TCONS_00000015-exon-sc0000001-1575043694:328739..329068 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1491911889:329833..330019 | TCONS_00000015-exon-sc0000001-1491911889:329833..330019 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1510915933:329833..330019 | TCONS_00000015-exon-sc0000001-1510915933:329833..330019 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1575043694:329833..330019 | TCONS_00000015-exon-sc0000001-1575043694:329833..330019 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1491911889:330979..332443 | TCONS_00000015-exon-sc0000001-1491911889:330979..332443 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1510915933:330979..332443 | TCONS_00000015-exon-sc0000001-1510915933:330979..332443 | Clytia hemisphaerica | exon |
| TCONS_00000015-exon-sc0000001-1575043694:330979..332443 | TCONS_00000015-exon-sc0000001-1575043694:330979..332443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:328739..332443 + |
Blast
BLAST of TCONS_00000015 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.281e-26 Identity = 82/283 (28.98%), Postives = 130/283 (45.94%), Query Frame = 3
Query: 195 DNEVSSSKKAIVVIPGNPGLVEFYELFMECLYKL--KGIPIIGFSHAGHSPIHPYTDEPMRTPPLT----------LQEQIQHKKDCVRQFIPDDCNIIFIGHSIGAYIILQLMDHIPERS-LHGILLFPTITNMIGTVDGKFWNLITSYLKLPLLWTAY-FSSYLPYALQDVLIRWRAKWRQIDAPIVPVCRRCVSWDVLSQGFRMVECELVEVKTLNPELSRIIRRYSNKLTVYYGDGDAWTPFSFYEEFIQKFPEVKTFYGRDGFKHDFVLDSSEGVARL 1001
D V K I +IPGNPG FY F + LY L + P+ SHAGH+ + P + + T + L QI+HK +R +P D ++ IGHSIG+Y LQ++ +PE + LLFPTI M + +G+ + + + L T Y P ++ +LIR + ++ P+ + L+ + E++EV + E I+ + KLT YYG D W P +YE+ + FPE H F+ ++ +A +
Sbjct: 37 DQSVKRPKLLIFIIPGNPGFSAFYVPFAKALYSLTNRRFPVWTISHAGHA-LAPKDKKILTTSEDSNAQEIKDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRVPELPVIRAFLLFPTIERMSESPNGRIATPLLCWFRYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEFSPL--NILEPFCLANAAYLGGQEMMEVVKRDDE---TIKEHLCKLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADM 313
The following BLAST results are available for this feature:
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