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Overview
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Homology
BLAST of TCONS_00000009 vs. Swiss-Prot (Human)
Match: PPCE (Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2) HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0 Identity = 420/708 (59.32%), Postives = 531/708 (75.00%), Query Frame = 1
Query: 58 MTKLTYPEVCRDNEAIDDFHGNKIPNPYLWLEDPDSAETKEFVEKQNDLTKSVLETCETRDKFNKRMTKLYDYPKHGCPFRRGNRYFYYHNTGLQNQSPLYVQEKLGGDSKVFLDANAMDSKGLIAISRVSFSEDGELCAYSISKKGSDWNTIKFMKVGDQQELPDILENVKFSCITWTHDHKGVFYNKYDKDESKQDGTEVNSNLNQKLYYHKLGTEQNEDILVAEAPDNPKWMIHAEISDEGRYVILTASEGCDPVNRLYICDLQKLDYQITGLLPYEKIVDNFDASYEFIANDENIFTFQTNLNAPRYRLIRIDINKPQQENWESLVAEHELDVLEWCTVVNKNILVMCYLHDVKHEIYLHRLDSGERYKRIDLDVGAIGGFSGRREHTEMFYTFASFLVPGVIYRYDFKTN--EPEVYYETKIEGFDASLYETKQIFFDSKDGTRIPMFIFYKKGITLDGNNPCILYGYGGFNISETPRFSITRTIFVSNYDGVYAVANIRGGGEYGEKWHKDGSLSKKQNCFDDFISAGEYLIQEKYTSKDKLCITGGSNGGLLVTSVANQRPDLFKCVVAHVSVCDMLKFHKFTIGHAWITDFGCADKKEDFEYLIKYSPLHTIK--SHDNTQYPCMMLLTADHDDRVVPLHSLKYMAQLQYTVGKNEHQTNPLLLRIDTESGHGAGKPTSKIISENADVFGFIGKMMNAKW 2169
M L YP+V RD A+ D+HG+KI +PY WLEDPDS +TK FVE QN +T LE C R + +RMT+LYDYPK+ C F++G RYFY++NTGLQNQ LYVQ+ L G+++VFLD N + G +A+ +FSEDGE AY +S GSDW TIKFMKV +ELPD+LE VKFSC+ WTHD KG+FYN Y + + K DGTE ++NL+QKLYYH LGT+Q+EDIL AE PD PKWM AE+SD+GRYV+L+ EGCDPVNRL+ CDLQ+ I G+L + K++DNF+ Y+++ N+ +FTF+TN +P YR+I ID P++ W+ LV EHE DVLEW V N LV+CYLHDVK+ + LH L +G K LDVG+I G+SG+++ TE+FY F SFL PG+IY D EP V+ E ++G DAS Y+T QIF+ SKDGT+IPMFI +KKGI LDG++P LYGYGGFNIS TP +S++R IFV + G+ AVANIRGGGEYGE WHK G L+ KQNCFDDF A EYLI+E YTS +L I GGSNGGLLV + ANQRPDLF CV+A V V DMLKFHK+TIGHAW TD+GC+D K+ FE+L+KYSPLH +K D+ QYP M+LLTADHDDRVVPLHSLK++A LQY VG++ Q+NPLL+ +DT++GHGAGKPT+K+I E +D+F FI + +N W
Sbjct: 1 MLSLQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHDVKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNVDW 708 The following BLAST results are available for this feature:
BLAST of TCONS_00000009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Alignments
The following features are aligned
Analyses
This transcript is derived from or has results from the following analyses
Genome Browser
External references for this transcript
Relationships
This transcript is a part of the following gene feature(s):
Sequences
The following sequences are available for this feature:
transcript sequence >TCONS_00000009 ID=TCONS_00000009|Name=TCONS_00000009|organism=Clytia hemisphaerica|type=transcript|length=2308bpRun BLAST on NCBI protein sequence of TCONS_00000009-protein >TCONS_00000009-protein ID=TCONS_00000009-protein|Name=TCONS_00000009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp MTKLTYPEVCRDNEAIDDFHGNKIPNPYLWLEDPDSAETKEFVEKQNDLTRun BLAST on NCBI transcript from alignment at sc0000001:144882..172204+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000009 ID=TCONS_00000009|Name=TCONS_00000009|organism=Clytia hemisphaerica|type=transcript|length=27323bp|location=Sequence derived from alignment at sc0000001:144882..172204+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:144882..172204+ >TCONS_00000009 ID=TCONS_00000009|Name=TCONS_00000009|organism=Clytia hemisphaerica|type=CDS|length=40356bp|location=Sequence derived from alignment at sc0000001:144882..172204+ (Clytia hemisphaerica) Annotated Terms
The following terms have been associated with this transcript:
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