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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000001 ID=TCONS_00000001|Name=TCONS_00000001|organism=Clytia hemisphaerica|type=transcript|length=2202bpRun BLAST on NCBI protein sequence of TCONS_00000001-protein >TCONS_00000001-protein ID=TCONS_00000001-protein|Name=TCONS_00000001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp MEGNKDEALKCFQFAIKFLDSGHVEKAKKFAEKSIRLYPTTIAEELLGKIRun BLAST on NCBI transcript from alignment at sc0000001:16085..38286+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000001 ID=TCONS_00000001|Name=TCONS_00000001|organism=Clytia hemisphaerica|type=transcript|length=22202bp|location=Sequence derived from alignment at sc0000001:16085..38286+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:16085..38286+ >TCONS_00000001 ID=TCONS_00000001|Name=TCONS_00000001|organism=Clytia hemisphaerica|type=CDS|length=11220bp|location=Sequence derived from alignment at sc0000001:16085..38286+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000001 vs. Swiss-Prot (Human)
Match: DJB12 (DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=4) HSP 1 Score: 183.341 bits (464), Expect = 5.574e-51 Identity = 132/382 (34.55%), Postives = 200/382 (52.36%), Query Frame = 3
Query: 90 MEGNKDEALKCFQFAIKFLDSGHVEKAKKFAEKSIRLYPTTIAEELLGKIN------SDQASPNGSAGSHDHVRRRRRTNSGRXXXXXXXXXXXXNYTPEQVEDVEKIKKCKDFYEVLSVSKSPSEADLKKSYRKLALKFHPDKNQAPGXXXXXXXXXXXXXTLGDPEKKRKYDTYGENAGPTTR--RTRRNYHEEEFEDISPEDIFNMFFGGGFPDXXXXXXXXXXXQQTY-FRQXXXXXXXXXXXXXXVSSXXXXXXXXXXXXXXXXXXXXXXXXPEPIFSFQPTSQYRYPMTTFKLGIKYYVKDRHVRQ-KHEDYNSIELKIEREFIETLQVRCYRERQYKAELRQQGHMWGSRELLEKADNYHPESCDKLKELQGRVH 1205
ME NKDEA +C A+K + S ++A +F EK+ RLYPT L+ +N DQ P + +H R+ T++ K YT EQV V+++K+CKD+YE+L VS+ S+ DLKK+YR+LALKFHPDKN APGA EAFK I A+ L +PEK+++YD +G++ R ++H DISPED+FNMFFGGGFP VHV R + TY RQ+ + + V + + +L+++ P S +P+ + + T LG+ YYV D + ++E +E ++I L+ C++E+Q L + +G ++ +A SC +L E+Q +H
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVRALIESLNQKPQTAGDQPPPTDT--THATHRKAGGTDA-PSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHGHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFV-----QLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHRRVTDHLGVVYYVGDTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQSEGLLYRARYFGDTDMYHRAQKMGTPSCSRLSEVQASLH 374 The following BLAST results are available for this feature:
BLAST of TCONS_00000001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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