TCONS_00073720-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073720-protein
Unique Name	TCONS_00073720-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	343

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073720-protein ID=TCONS_00073720-protein|Name=TCONS_00073720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MKFELAFLVLAQLVLLYGQQREKKIKKKGGLNLKKLSKLENDAVLHGYAE
SYEFCQQNFKYEPWNCPKPQAVKNAKHPISFTDIYEHATKEASYIYSIVA
AGVTHYVIRACQQGKDRNCQCKSKKPKNGLGAPVVMCQSIIDHGTKRARR
ILKQMDFKKVSDPVRKAFNWKNAASGLQVYRQLMPRECRCSGVSGHCTAT
VCWEATPPSLKVPAQQLKQLYNKAVKIKPTEIEKPFFPTKNPNRSRPARN
LVNDTKLIYITDSPSYCKPNPLLGLPGTLNRECDHTQDNSCNKLCSKCGY
RKHSVVKKHINTKCNCKFHWCCKVTCDTCIERRLVTKCYLPSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045775	XLOC_045775	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073720	TCONS_00073720	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005817	Wnt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005102	receptor binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0016055	Wnt signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0016055	Wnt signaling pathway
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005102	receptor binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005817	Wnt	PRINTS	PR01349	WNTPROTEIN	coord: 189..203 score: 53.28 coord: 256..267 score: 49.8 coord: 109..122 score: 41.45 coord: 90..104 score: 41.97
IPR005817	Wnt	SMART	SM00097	wnt1_3	coord: 27..339 e-value: 1.2E-22 score: 79.0
IPR005817	Wnt	PFAM	PF00110	wnt	coord: 42..338 e-value: 5.6E-63 score: 213.2

Blast

[Close]

BLAST of TCONS_00073720-protein vs. Swiss-Prot (Human)
Match: WNT7B (Protein Wnt-7b OS=Homo sapiens GN=WNT7B PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.032e-45
Identity = 98/294 (33.33%), Postives = 138/294 (46.94%), Query Frame = 0

Query:   55 CQQNFKYEPWNCPKPQAVKNAKHPISFTDIYEHATKEASYIYSIVAAGVTHYVIRACQQGKDRNCQCKSKKP---KNGLGAPVVMCQSIIDHGTKRARRILKQMDFKKVSDPVRKAFNWKNAASGLQVYRQLMPRECRCSGVSGHCTATVCWEATPPSLKVPAQQLKQLYNKAVKI---KPTEIEKPFFPTKNPNRS--RPARNLVNDTKLIYITDSPSYCKPNPLLGLPGTLNRECDHTQ--DNSCNKLCSKCGYRKHSVVKKHINTKCNCKFHWCCKVTCDTCIERRLVTKC 338
            CQ  F++  WNC              F       ++EA++ Y+I AAGV H V  AC QG   NC C  +K        G     C + + +G   +RR +   D +++    R+  N  N  +G +V    M  EC+C GVSG CT   CW  T P  +     LK+ YN AV++   + + + +P F      RS  +P      +T L+YI  SP+YC+ +   G  GT  R C+ T    + C+ +C   GY  H   K     +CNCKFHWCC V C+TC ER  V  C
Sbjct:   73 CQYQFRFGRWNCSA------LGEKTVFGQELRVGSREAAFTYAITAAGVAHAVTAACSQGNLSNCGCDREKQGYYNQAEGWKWGGCSADVRYGIDFSRRFV---DAREIKKNARRLMNLHNNEAGRKVLEDRMQLECKCHGVSGSCTTKTCW-TTLPKFREVGHLLKEKYNAAVQVEVVRASRLRQPTFLRIKQLRSYQKPM-----ETDLVYIEKSPNYCEEDAATGSVGTQGRLCNRTSPGADGCDTMCCGRGYNTHQYTKVW---QCNCKFHWCCFVKCNTCSERTEVFTC 348

The following BLAST results are available for this feature:

BLAST of TCONS_00073720-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073720-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WNT7B	7.032e-45	33.33	Protein Wnt-7b OS=Homo sapiens GN=WNT7B PE=2 SV=2	[more]

You are here

TCONS_00073720-protein (polypeptide) - C. hemisphaerica