TCONS_00073515-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073515-protein
Unique Name	TCONS_00073515-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	438

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073515-protein ID=TCONS_00073515-protein|Name=TCONS_00073515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
TMPNQDYICCLSQVIAEMPLPLPKENMSSLLLIENHISTTAAACEKHDFD
YHHSKHASYRTVALFLSGEMECRKHHCSQDPEPPMIIYALILIATLLVAL
CGNLFSFSMIMKIRSLRRHATYKILASLAITDLLVSVFVIPIKIAIALNN
MNFCYKASLCRLLHTADVTFFAASVTHLFFIAVDRYISITKPYYYRHCSL
MRRWRSCIFFIWAYAIFWGVILNNVHLTPPFGFGETFKVVEYKCRKFDVY
FDRSLYPVVFFLPCVIMVYLYLQIWRVAVKQSREIERYKGKPPQHLVGSI
SPIPHHDNPCKHFWMSHIIEFKATKVIVIVFGTFVLCYTPLCLMTFIHTF
IPFEISNVVLSLLEYFPNLSSCLNPFIYCFFHEDFRENLQKMLRRDAFLK
EHAMSLKKRHSKGKHRRHGTTETLTIKLNGENDDGDVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045629	XLOC_045629	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073515	TCONS_00073515	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 87..111 score: 17.62 coord: 167..189 score: 33.98 coord: 360..386 score: 31.87 coord: 121..142 score: 34.16 coord: 252..275 score: 24.38 coord: 323..347 score: 25.59
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 102..378 e-value: 1.7E-35 score: 122.5
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 173..189
None	No IPR available	GENE3D	1.20.1070.10		coord: 67..434 e-value: 4.8E-62 score: 209.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..438
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 77..401
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 102..378 score: 33.792

Blast

[Close]

BLAST of TCONS_00073515-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 2.993e-24
Identity = 86/352 (24.43%), Postives = 155/352 (44.03%), Query Frame = 0

Query:   74 KHHCSQDPEPPMIIYALILIATLLVALC-GNLFSFSMIMKIRSLRRHATYKILASLAITDLLVSVFVIPIKIAIALNNMNFCYKASLCRLLHTADVTFFAASVTHLFFIAVDRYISITKPYYYRHCSLMRRWRSCIFFIWAYAIFWGVILNNVHLTPPFGFGETFKVVEYKCRKFDVYFDRSLYPVV-----FFLPCVIMVYLYLQIWRVAVKQSREIERYKGKPPQHLVGSISPIPHHDNPCKHFWMSHIIEFKATKVIVIVFGTFVLCYTPLCLMTFIHTFIPFEISNVVLSLLEYFPNLSSCLNPFIYCFFHEDFRENLQKML-RRDAFLKEHAMSLKKRHSKGKHRRH 418
             H  +Q+ +   ++   I+++ +++A+  GN+   + I K   L+    Y  + SLA  DL++ + V+P   A  L  M + +    C    + DV    AS+  L  IAVDRY +IT P+ Y+      + R  I  +W  +     +   +H                 C  F   F    Y +      F++P VIMV++Y ++++ A +Q ++I++ +G+     +  +       +  +      + E KA K + I+ GTF LC+ P  ++  +H      I   V  LL +   ++S  NP IYC    DFR   Q++L  R + LK +        + G+   +
Sbjct:   21 DHDVTQERDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNY-FITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDF---FTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNTGEQSGY 366

The following BLAST results are available for this feature:

BLAST of TCONS_00073515-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073515-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB2	2.993e-24	24.43	Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

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TCONS_00073515-protein (polypeptide) - C. hemisphaerica