TCONS_00073507-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073507-protein
Unique NameTCONS_00073507-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073507-protein ID=TCONS_00073507-protein|Name=TCONS_00073507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp
MSSKLLNSIFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSG
YPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESFN
TKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPSKQK
SQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQL
TRDAVSKLGFLIGATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRR
LQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDES
STSSSFTHTPTSTRNSSQNSSSQQYDWSHIQEQISRDIDLTASFKSSQPN
MVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQHSH
LFLLSSLRSVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIIS
CRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNL
WNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPE
KYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGN
SSFLESLAPPVPPTPPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045622XLOC_045622Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073507TCONS_00073507Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006599CARP_motif
IPR012945Tubulin-bd_cofactor_C_dom
IPR017901C-CAP_CF_C-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006599CARP motifSMARTSM00673carpcoord: 396..433
e-value: 0.034
score: 23.3
coord: 434..468
e-value: 2000.0
score: 7.4
NoneNo IPR availableGENE3D2.160.20.70coord: 359..569
e-value: 7.9E-17
score: 60.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..322
IPR012945Tubulin binding cofactor C-like domainPFAMPF07986TBCCcoord: 391..503
e-value: 4.1E-26
score: 91.0
IPR017901C-CAP/cofactor C-like domainPROSITEPS51329C_CAP_COFACTOR_Ccoord: 361..509
score: 20.225

Blast
BLAST of TCONS_00073507-protein vs. Swiss-Prot (Human)
Match: TBCC1 (TBCC domain-containing protein 1 OS=Homo sapiens GN=TBCCD1 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.774e-111
Identity = 200/612 (32.68%), Postives = 332/612 (54.25%), Query Frame = 0
Query:    9 IFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSG-YPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESF-NTKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPS---KQKSQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQ---LTRDAVSKLGFLI-GATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRRLQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDESSTSSSFTHTPTSTRNSSQNSSSQQYDWSHIQEQISRDIDLTASFKSSQPNMVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQHSHLFLLSSLRSVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIISCRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNLWNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPEKYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGNSSFLESLAPPV 611
            + LWV  EPF +G L  P P K + H LRK+  Y + +   G YPR+ +S W+H+AC KLQ+ + LAWLYF   + L+ +  E  ++ +E   N  + +++E  + + SVD L+F+L+L+IQ+ N +SL+++L+ G+E+PS   K +S DL  ++    K+ N+++  +F+  +++D+L+LL++P  L++  +      ++R+AV  L FLI G     R + PL   A  Q     +G+SKI + FS  +L++WL++ L  NP                        F TS  L                          S ++  W+H  E  ++                 +I  N++ AP   + ++ +QV  +T+A++ D L+ +  K+HRC  S ++LLS LRSV IEKC ++  VLG V T + + +C+ +++ A C R+ I S     F++ TP+RP++L  N+ +TF P++T YP L + M   G+   PN W+NP+       D    ++++  PP +F+ F+IPFE++G   E P  LP  YQ AL QRE +++ W   V+++ +  DQRK+ Q LV  +F EWL  +G+   L+SL PP 
Sbjct:    6 VLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHIACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQFLLFLYIQQLNKVSLRTSLI-GEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHADSGFSKISKTFSFYKLETWLRSCLTGNP------------------------FGTSACLK-------------------------SGKKLAWAHQVEGTTKRA---------------KIACNTHVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYWDNPMVVCRENSD---TRVFQLLPPCEFYVFIIPFEMEGDTTEIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQQLDSLVPPA 549          
The following BLAST results are available for this feature:
BLAST of TCONS_00073507-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBCC12.774e-11132.68TBCC domain-containing protein 1 OS=Homo sapiens G... [more]
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