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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073507 ID=TCONS_00073507|Name=TCONS_00073507|organism=Clytia hemisphaerica|type=transcript|length=3034bpRun BLAST on NCBI protein sequence of TCONS_00073507-protein >TCONS_00073507-protein ID=TCONS_00073507-protein|Name=TCONS_00073507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp MSSKLLNSIFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSGRun BLAST on NCBI transcript from alignment at scaffold_93:176977..194332- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073507 ID=TCONS_00073507|Name=TCONS_00073507|organism=Clytia hemisphaerica|type=transcript|length=17356bp|location=Sequence derived from alignment at scaffold_93:176977..194332- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_93:176977..194332- >TCONS_00073507 ID=TCONS_00073507|Name=TCONS_00073507|organism=Clytia hemisphaerica|type=CDS|length=27810bp|location=Sequence derived from alignment at scaffold_93:176977..194332- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073507 vs. Swiss-Prot (Human)
Match: TBCC1 (TBCC domain-containing protein 1 OS=Homo sapiens GN=TBCCD1 PE=2 SV=1) HSP 1 Score: 317.775 bits (813), Expect = 5.977e-96 Identity = 197/609 (32.35%), Postives = 330/609 (54.19%), Query Frame = 1
Query: 649 IFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSG-YPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESF-NTKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPS---KQKSQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQ---LTRDAVSKLGFLI-GATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRRLQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDEXXXXXXXXXXXXXXRXXXXXXXXXXYDWSHIQEQISRDIDLTASFKSSQPNMVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQXXXXXXXXXXXXVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIISCRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNLWNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPEKYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGNSSFLESLA 2448
+ LWV EPF +G L P P K + H LRK+ Y + + G YPR+ +S W+H+AC KLQ+ + LAWLYF + L+ + E ++ +E N + +++E + + SVD L+F+L+L+IQ+ N +SL+++L+ G+E+PS K +S DL ++ K+ N+++ +F+ +++D+L+LL++P L++ + ++R+AV L FLI G R + PL A Q +G+SKI + FS +L++WL+ SCL+ + F TS L + + W+H E ++ +I N++ AP + ++ +QV +T+A++ D L+ + K+HRC S ++LLS LRSV IEKC ++ VLG V T + + +C+ +++ A C R+ I S F++ TP+RP++L N+ +TF P++T YP L + M G+ PN W+NP+ D ++++ PP +F+ F+IPFE++G E P LP YQ AL QRE +++ W V+++ + DQRK+ Q LV +F EWL +G+ L+SL
Sbjct: 6 VLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHIACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQFLLFLYIQQLNKVSLRTSLI-GEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHADSGFSKISKTFSFYKLETWLR-----------SCLT-------------GNPFGTSACLKSGKKLA-------------------------WAHQVEGTTKRA---------------KIACNTHVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYWDNPMVVCRENSD---TRVFQLLPPCEFYVFIIPFEMEGDTTEIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQQLDSLV 546 The following BLAST results are available for this feature:
BLAST of TCONS_00073507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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