TCONS_00073507-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073507-protein
Unique NameTCONS_00073507-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073507-protein ID=TCONS_00073507-protein|Name=TCONS_00073507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp
MSSKLLNSIFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSG
YPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESFN
TKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPSKQK
SQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQL
TRDAVSKLGFLIGATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRR
LQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDES
STSSSFTHTPTSTRNSSQNSSSQQYDWSHIQEQISRDIDLTASFKSSQPN
MVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQHSH
LFLLSSLRSVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIIS
CRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNL
WNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPE
KYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGN
SSFLESLAPPVPPTPPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045622XLOC_045622Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073507TCONS_00073507Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006599CARP_motif
IPR012945Tubulin-bd_cofactor_C_dom
IPR017901C-CAP_CF_C-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Expect = 7.9E-17 / Score = 60.6Score = 20.225SequenceSM00673G3DSA:2.160.20.70mobidb-litePF07986PS51329
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006599CARP motifSMARTSM00673carpcoord: 396..433
e-value: 0.034
score: 23.3
coord: 434..468
e-value: 2000.0
score: 7.4
NoneNo IPR availableGENE3D2.160.20.70coord: 359..569
e-value: 7.9E-17
score: 60.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..322
IPR012945Tubulin binding cofactor C-like domainPFAMPF07986TBCCcoord: 391..503
e-value: 4.1E-26
score: 91.0
IPR017901C-CAP/cofactor C-like domainPROSITEPS51329C_CAP_COFACTOR_Ccoord: 361..509
score: 20.225

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073507-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MSSKLLNSIFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSGYPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESFNTKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPSKQKSQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQLTRDAVSKLGFLIGATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRRLQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDESSTSSSFTHTPTSTRNSSQNSSSQQYDWSHIQEQISRDIDLTASFKSSQPNMVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQHSHLFLLSSLRSVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIISCRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNLWNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPEKYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGNSSFLESLAPPVPPTPPR50100150200250300350400450500550600Expect = 2.77e-111 / Id = 32.68SequenceTBCC1
Match NameE-valueIdentityDescription
TBCC12.774e-11132.68TBCC domain-containing protein 1 OS=Homo sapiens G... [more]
back to top