TCONS_00073507-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073507-protein
Unique Name	TCONS_00073507-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	617

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073507-protein ID=TCONS_00073507-protein|Name=TCONS_00073507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp
MSSKLLNSIFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSG
YPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESFN
TKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPSKQK
SQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQL
TRDAVSKLGFLIGATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRR
LQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDES
STSSSFTHTPTSTRNSSQNSSSQQYDWSHIQEQISRDIDLTASFKSSQPN
MVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQHSH
LFLLSSLRSVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIIS
CRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNL
WNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPE
KYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGN
SSFLESLAPPVPPTPPR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045622	XLOC_045622	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073507	TCONS_00073507	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006599	CARP_motif
IPR012945	Tubulin-bd_cofactor_C_dom
IPR017901	C-CAP_CF_C-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006599	CARP motif	SMART	SM00673	carp	coord: 396..433 e-value: 0.034 score: 23.3 coord: 434..468 e-value: 2000.0 score: 7.4
None	No IPR available	GENE3D	2.160.20.70		coord: 359..569 e-value: 7.9E-17 score: 60.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..322
IPR012945	Tubulin binding cofactor C-like domain	PFAM	PF07986	TBCC	coord: 391..503 e-value: 4.1E-26 score: 91.0
IPR017901	C-CAP/cofactor C-like domain	PROSITE	PS51329	C_CAP_COFACTOR_C	coord: 361..509 score: 20.225

Blast

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BLAST of TCONS_00073507-protein vs. Swiss-Prot (Human)
Match: TBCC1 (TBCC domain-containing protein 1 OS=Homo sapiens GN=TBCCD1 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.774e-111
Identity = 200/612 (32.68%), Postives = 332/612 (54.25%), Query Frame = 0

Query:    9 IFLWVDPEPFDIGILPHPVPVKLTHHNLRKLFAYAKNKGKSG-YPRISYSVWKHVACNKLQIEEQLAWLYFHTCEILTERNQEHHMKNAESF-NTKNTQQLESSKEKRSVDLLKFILYLFIQRANVISLKSALVTGDEYPS---KQKSQDLDGRAGIGLKSLNEHAQMSFMASNMADILDLLVEPDTLSSDVNDMQ---LTRDAVSKLGFLI-GATCDGRTVIPLDSAASTQNEFQKAGYSKIMQMFSCRRLQSWLKAHLKRNPFGTYSCLSLGQKLRGRGYSCGDDSFNTSLNLSFNDESSTSSSFTHTPTSTRNSSQNSSSQQYDWSHIQEQISRDIDLTASFKSSQPNMVNRILSNSNYAPECSKRIICNQVCHRTVARTGDILSQSMAKVHRCQHSHLFLLSSLRSVVIEKCHDTTIVLGSVDTLVVVIACEKIRIFAPCKRILIISCRKSSFNLCTPSRPVLLGKNEDITFTPYYTSYPGLINDMNVCGIPPEPNLWNNPLCFGLSPGDEKEKKIWKECPPEQFFKFVIPFEIDGKCKECPVHLPEKYQDALRQRESRVEDWHTMVRDSGMKHDQRKRLQSLVNERFQEWLKESGNSSFLESLAPPV 611
            + LWV  EPF +G L  P P K + H LRK+  Y + +   G YPR+ +S W+H+AC KLQ+ + LAWLYF   + L+ +  E  ++ +E   N  + +++E  + + SVD L+F+L+L+IQ+ N +SL+++L+ G+E+PS   K +S DL  ++    K+ N+++  +F+  +++D+L+LL++P  L++  +      ++R+AV  L FLI G     R + PL   A  Q     +G+SKI + FS  +L++WL++ L  NP                        F TS  L                          S ++  W+H  E  ++                 +I  N++ AP   + ++ +QV  +T+A++ D L+ +  K+HRC  S ++LLS LRSV IEKC ++  VLG V T + + +C+ +++ A C R+ I S     F++ TP+RP++L  N+ +TF P++T YP L + M   G+   PN W+NP+       D    ++++  PP +F+ F+IPFE++G   E P  LP  YQ AL QRE +++ W   V+++ +  DQRK+ Q LV  +F EWL  +G+   L+SL PP 
Sbjct:    6 VLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHIACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQFLLFLYIQQLNKVSLRTSLI-GEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHADSGFSKISKTFSFYKLETWLRSCLTGNP------------------------FGTSACLK-------------------------SGKKLAWAHQVEGTTKRA---------------KIACNTHVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYWDNPMVVCRENSD---TRVFQLLPPCEFYVFIIPFEMEGDTTEIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQQLDSLVPPA 549

The following BLAST results are available for this feature:

BLAST of TCONS_00073507-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073507-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBCC1	2.774e-111	32.68	TBCC domain-containing protein 1 OS=Homo sapiens G...	[more]

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TCONS_00073507-protein (polypeptide) - C. hemisphaerica