TCONS_00073491-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073491-protein
Unique NameTCONS_00073491-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073491-protein ID=TCONS_00073491-protein|Name=TCONS_00073491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MALVCSISGEVPENPVVSPVSNQVFERRLIEKFISENGTDPVTGDTLSES
ELIEIKTTALTKPRPPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQAAR
QELSHALYQHDAACRVIARLTKEATAAREALATLKPQAGVSQLTSATTNV
SSGNKVDDMDIVEPAEIGMSEEVLQKLQDKATVLTSERKKRGKKPPEDLT
PIEDIKSFKQVASHPGLHSASVPGILALDLQDSDPSKCITGGVDKNAVVF
NKDNEQVVATLRGHTKKVTSVIYHPYEEIGITASADNTVRVWSIPNSSCA
YTIRAHDAAVTGLSLHATGDYVLTSSIDQHWAFSDIQTGKVLIKSISDPN
ASHGLTCAQFHPDGLIFGTGTTDSSIKIWDLKERKYVASFPGHSGPITAI
DFSENGYYLATSADDSVVKLWDLRKLKNFKTIPLDENDEIKSLSFDKSGN
YLAVAGSNIQIYVVKQWDLLRQINDHTGLVTSVKFGKNADFLASASMDRT
LKYFSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045615XLOC_045615Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073491TCONS_00073491Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR015943WD40/YVTN_repeat-like_dom
IPR013915Pre-mRNA_splic_Prp19
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 367..381
score: 32.2
coord: 409..423
score: 35.32
coord: 280..294
score: 32.41
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 339..380
e-value: 1.8E-4
score: 30.8
coord: 383..422
e-value: 2.8E-10
score: 50.1
coord: 466..505
e-value: 9.8E-5
score: 31.7
coord: 296..335
e-value: 0.014
score: 24.6
coord: 254..293
e-value: 4.8E-8
score: 42.7
coord: 207..251
e-value: 11.0
score: 10.4
coord: 425..465
e-value: 9.1
score: 10.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 468..502
e-value: 0.0025
score: 18.5
coord: 256..293
e-value: 5.5E-5
score: 23.7
coord: 353..380
e-value: 0.01
score: 16.6
coord: 385..422
e-value: 1.1E-7
score: 32.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 473..506
score: 10.609
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 261..302
score: 14.819
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 390..431
score: 16.39
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 355..389
score: 11.812
IPR003613U box domainSMARTSM00504Ubox_2coord: 2..68
e-value: 2.7E-24
score: 96.7
IPR003613U box domainPFAMPF04564U-boxcoord: 3..54
e-value: 9.1E-6
score: 25.7
IPR003613U box domainPROSITEPS51698U_BOXcoord: 1..73
score: 24.416
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..60
e-value: 1.2E-5
score: 24.2
NoneNo IPR availableGENE3D1.10.10.670coord: 291..344
e-value: 3.1E-12
score: 45.8
NoneNo IPR availableGENE3D2.80.10.50coord: 445..505
e-value: 1.7E-12
score: 46.6
coord: 169..290
e-value: 5.9E-15
score: 54.6
NoneNo IPR availableCDDcd00200WD40coord: 224..505
e-value: 5.68739E-56
score: 189.468
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..55
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 345..444
e-value: 3.1E-31
score: 108.1
IPR013915Pre-mRNA-splicing factor 19PFAMPF08606Prp19coord: 68..133
e-value: 7.3E-33
score: 112.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 409..423
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 239..506
score: 43.081
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 226..504

Blast
[Close]
BLAST of TCONS_00073491-protein vs. Swiss-Prot (Human)
Match: PRP19 (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 340/509 (66.80%), Postives = 416/509 (81.73%), Query Frame = 0 
Query:    1 MALVCSISGEVPENPVVSPVSNQVFERRLIEKFISENGTDPVTGDTLSESELIEIKTTALTKPRPPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQAARQELSHALYQHDAACRVIARLTKEATAAREALATLKPQAGV----SQLTSATTNVSSGNKVDDMDIVEPAEIGMSEEVLQKLQDKATVLTSERKKRGKKPPEDLTPIEDIKSFKQVASHPGLHSASVPGILALDLQDSDPSKCITGGVDKNAVVFNKDNEQVVATLRGHTKKVTSVIYHPYEEIGITASADNTVRVWSIPNSSCAYTIRAHDAAVTGLSLHATGDYVLTSSIDQHWAFSDIQTGKVLIKSISDPNASHGLTCAQFHPDGLIFGTGTTDSSIKIWDLKERKYVASFPGHSGPITAIDFSENGYYLATSADDSVVKLWDLRKLKNFKTIPLDENDEIKSLSFDKSGNYLAVAGSNIQIYVVKQWDLLRQINDHTGLVTSVKFGKNADFLASASMDRTLKYFS 505
            M+L+CSIS EVPE+P VSPVSN V+ERRLIEK+I+ENGTDP+    LSE +LI+IK     +P+PPSATSIPAILK+LQDEWDAVMLHSFTLRQQLQ  RQELSHALYQHDAACRVIARLTKE TAAREALATLKPQAG+    +  +S  + V +G  +D  ++V     GM+ E++QKLQDKATVLT+ERKKRGK  PE+L   E++  ++QVASH GLHSAS+PGILALDL  SD +K +TGG DKN VVF+K +EQ++ATL+GHTKKVTSV++HP +++  +AS D T+R+WS+PN+SC   +RAH++AVTGLSLHATGDY+L+SS DQ+WAFSDIQTG+VL K ++D  +   LTCAQFHPDGLIFGTGT DS IKIWDLKER  VA+FPGHSGPIT+I FSENGYYLAT+ADDS VKLWDLRKLKNFKT+ LD N E+KSL FD+SG YLA+ G+++QIY+ KQW  +    +H+GL T V FG +A F+AS  MDR+LK++S
Sbjct:    1 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELV-----GMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTK-VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYS 503
The following BLAST results are available for this feature:
BLAST of TCONS_00073491-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP190.000e+066.80Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
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