TCONS_00073413-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073413-protein
Unique NameTCONS_00073413-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073413-protein ID=TCONS_00073413-protein|Name=TCONS_00073413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MPLPDNRRINGPRETYQITSFLTPQHNDADVPSTGIVNDKGLRKDTRRTD
EVRPIYLKAGVVQSANGSAYLETSGTKLTCAVYGPRDYAKRHQFRSSGKL
TCSLTFAPFSKPQRFTEIRDSLSTEYSNFIADSLMSAVCLDAYPKSQIDV
YVNVLEDNGNTLSYAITAASVALADAGIEMVDLVTSSSLVFNDDVFCLDP
DSSEQKHKDVYGKMSIAYLPSLNKISCLLQDGAVEVERSIELVNTCLEGC
LRVHDVMKECLLKAPNTDEES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045558XLOC_045558Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073413TCONS_00073413Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 51..179
e-value: 1.7E-30
score: 106.1
IPR027408PNPase/RNase PH domainGENE3D3.30.230.70coord: 1..266
e-value: 8.9E-62
score: 208.1
NoneNo IPR availableCDDcd11371RNase_PH_MTR3coord: 52..263
e-value: 2.98316E-96
score: 283.302
IPR015847Exoribonuclease, phosphorolytic domain 2SUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 180..263
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 38..204

Blast
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BLAST of TCONS_00073413-protein vs. Swiss-Prot (Human)
Match: EXOS6 (Exosome complex component MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.636e-29
Identity = 92/274 (33.58%), Postives = 135/274 (49.27%), Query Frame = 0 
Query:    5 DNRRINGPRETYQITSFLTPQHNDADVPSTGIVNDKGLRKDTRRTDEVRPIYLKAGVVQSANGSAYLETSGTKLTCAVYGPRDYAKRHQFRSS------------GKLTCSLTFAPFSKPQRFTEIRDSLSTEYSNFIADSLMSAVCLDAYPKSQIDVYVNVLEDNGNTLSYAITAASVALADAGIEMVDLVTSSSLVFNDD---VFCLDPDSSEQKHKDVYGKMSIAYLPSLNKIS-CLLQDGAVEVERSIELVNTCLEGCLRVHDVMKECLL 262
            D+RRI GP E+        PQ   AD          G R  TR    +RP+Y +AG++  A GSAYLE  GTK+ CAV GPR      +                G+L C    APF+  +R          E +  + ++L  AV L  YP++Q++V   +LED G+ L+ A+TAA++ALADAG+EM DLV    L         + LDP   E++       +++A +P LN+++  L        E   E V   LEGC R++ V+++ L+
Sbjct:    4 DHRRIRGPEESQ------PPQLYAADEEEA-----PGTRDPTR----LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA--GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSLV 260
The following BLAST results are available for this feature:
BLAST of TCONS_00073413-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS61.636e-2933.58Exosome complex component MTR3 OS=Homo sapiens GN=... [more]
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