TCONS_00073413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073413
Unique NameTCONS_00073413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073413 ID=TCONS_00073413|Name=TCONS_00073413|organism=Clytia hemisphaerica|type=transcript|length=2160bp
tcTTAGATAAaacaatgaattaaaaaaataaaacagaatTCAATGcatca
aaagaaaatcatatTTGAACTTGAACACAATCCAACATGCCGCTTCCAGA
TAACCGCCGAATCAATGGACCACGTGAAACTTATCAAATCACCTCATTTT
TGACGCCACAGCACAACGACGCCGATGTGCCAAGCACCGGGATTGTGAAC
GATAAAGGATTGAGGAAAGACACACGACGTACAGATGAAGTGCGTCCGAT
TTATTTGAAAGCAGGTGTTGTTCAAAGTGCAAATGGTTCCGCTTACTTGG
AGACGTCCGGTACCAAACTAACGTGCGCCGTGTATGGGCCACGTGATTAC
GCTAAACGTCATCAATTCCGATCTTCCGGTAAACTCACCTGTAGTCTCAC
GTTTGCTCCCTTCTCTAAACCGCAACGTTTTACTGAAATCCGGGACTCTC
TAAGTACGGAATACTCTAATTTCATAGCAGATTCTCTCATGTCCGCAGTA
TGTCTTGACGCTTATCCGAAATCTCAAATCGACGTATACGTTAATGTGTT
GGAAGATAACGGGAATACCTTAAGTTATGCTATAACGGCTGCGTCCGTTG
CGTTGGCTGACGCTGGAATCGAAATGGTAgatttggtgacgtcatcaagC
CTCGTTTTTAATGATGACGTCTTTTGTTTGGACCCAGACTCCAGCGaaca
aaaacacaaagacgttTATGGGAAAATGTCCATAGCTTATCTACCATCTT
TAAATAAGATTTCGTGTTTGCTTCAAGATGGCGCAGTGGAAGTTGAACGT
TCTATTGAACTTGTGAACACGTGTTTAGAGGGTTGCTTAAGGGTACATGA
CGTCATGAAAGAATGTCTTTTAAAGGCACCTAATACTGACGAGGAGAGTT
GAGAGGGGAATGGAAAGAAAGTTTTTAACATAATAACACGTCCGGACAGT
AGTTTATTTTCCCCCTTTTTCTTCggtttattttaatttaaaactTGATT
AAGTCGATGGCCCCTTCAGCTTGGAAAGACTCTCCGCCATCTGAATCGCC
TATAGTTCGAAAGAAATTGATTGTCTCTTACATAACGGCCAAGCTCTGGC
CTTACCTTGTAGCAAAAGTATGACAGGAAGAGAATTTTACCCGATGGTAT
CTAATTACAGGAGTAGCATATCAAAAGTTGATTGTTAATATACTCATTCT
TATAattttacctcattttacagCTAAAACCTAAAACAaattattaaaac
aaaaaataccttgTTGGAGAATTCAGTTTACCAACAAGACATTTGAACAA
AGACAACAAAACTGCCGATTATTATTTTCTTGACAAAATGGTGCTTCCAT
TGACTTTACTGCAGACCGCTCAAAATCATCCAATGTTGGTTGAGTTGAAA
AATGGAGAAACATATAACGGACATTTGGTCAGCTGTGATAATTGGATGAA
TATCAATCTGAGAGAAGTTATTTGCACATCAAGGGACGGTGATCGCTTTT
GGAGGATGCCAGAATGTTATGTTCGAGGAAGCACTGTCAAATATCTACGT
ATCCCTGATGAGGTTATTGATATGGTGAAAGAAGACGCCCTTCAAAAGAA
CCGACAACGCCATCATAACGCCAACAGACGAGGTGGTCCAAAGGGCGGAC
GCGGTGGTCGAGGTGGACATCGTGGTGGTCGTGGTGGCGGCAGAGGGCGC
CCTGATAATGCTGAACGATAATTTTCATCCTGAGAATTgctttgttgttt
attttataCCGTTGTTGTTGTTTTAGGGTTTCACGCCCTGGTATGATTTA
TGGGACGCCCCTAACGCCTGTTGCTTCAAAGAGACATGTATAAATGAACG
GCCCTTTTAACGGcagaatgaattaaaaaattcaTCTTGATGTTTCTAGA
TATAGAAAAACTATCATAATTACTATTCGTCCTTAATCAAAAGCATTATG
AGACGTTTTGTACTGGTTGAAAAGACCAAACAAAGTTGGAATTTTTATAC
CAGAatttatttgtgtttttttagctCTTATAAATTTTAGGGGGaatttt
ccctctttttttaattatttaaatcaagaaattgaatttttatcaaCTTG
AAAACTTTAAACGTTTCAATTTGTCTATACCTAGAAAATAAATAGTTTTT
ACAATTCCAC
Run BLAST on NCBI

protein sequence of TCONS_00073413-protein

>TCONS_00073413-protein ID=TCONS_00073413-protein|Name=TCONS_00073413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MPLPDNRRINGPRETYQITSFLTPQHNDADVPSTGIVNDKGLRKDTRRTD
EVRPIYLKAGVVQSANGSAYLETSGTKLTCAVYGPRDYAKRHQFRSSGKL
TCSLTFAPFSKPQRFTEIRDSLSTEYSNFIADSLMSAVCLDAYPKSQIDV
YVNVLEDNGNTLSYAITAASVALADAGIEMVDLVTSSSLVFNDDVFCLDP
DSSEQKHKDVYGKMSIAYLPSLNKISCLLQDGAVEVERSIELVNTCLEGC
LRVHDVMKECLLKAPNTDEES
Run BLAST on NCBI

transcript from alignment at scaffold_91:392060..397118-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073413 ID=TCONS_00073413|Name=TCONS_00073413|organism=Clytia hemisphaerica|type=transcript|length=5059bp|location=Sequence derived from alignment at scaffold_91:392060..397118- (Clytia hemisphaerica)
TCTTAGATAAAACAATGAATTAAAAAAATAAAACAGAATTCAATGCATCA
AAAGAAAATCATATTTGAACTTGAACACAATCCAACATGCCGCTTCCAGA
TAACCGCCGAATCAATGGACCACGTGAAACTTATCAAATCACCTCATTTT
TGACGCCACAGCACAACGACGCCGATGTGCCAAGCACCGGGATTGTGAAC
GATAAAGGATTGAGGAAAGACACACGACGTACAGATGAAGTGCGTCCGAT
TTATTTGAAAGCAGGTAAAACAGATGAGATTCAGGTGCCATCATGCACAT
TAATAGTAGTTTACTGTTATGTTACTTGTGTATGATTATATAACTTTACT
GTTTTAGTTTTTACCTTATAAGCCTCTAGGCTAATAAGCCTCTATAGCTG
ACCACCATACCTTATCGGGGAAAAAATGTCGGGATTTTGATTAGTCGGGG
AAAAAATTCGTCGGCGAAAAATTTCGTCACCCCCTTAAAGTTTTCGTCAC
TTTTCCCCGACATTTTTTTCCCCGGTAATGTACCATGGACACAGTTTCTC
AATCCCGGTAAAGCAAAATCTTTGGTCGGAGCTTTTTGGAATTGGTAGTT
ACCCTAATGGTAGCACTACTAAATGTTGATAATGATAGCATTACTCTACT
AATGTTTATGAAGATAGTTTTAAAAACGAGCAATTTCATTGAATTGTAAG
TTTACCCACATCGAGTAATGGTACCAATGAATAGGGCACTGCTTTTCTAA
AAACTCCGATCAAAGACGGCGGGCTTACTACCAGAGAACTTCAATACCTC
AAAAGTGCACTCCTGTGAGCTCTTACCCTAATCCTTATTAATTATATTGA
TATCTCTAACTGAAAAGAAGGAATTAAGATTGGGAGATTTAGTCACAACT
CTTGGTACAGGGTATATATAGAAAATGGTTGAAATTGACGTAGTGTCAAG
AGAAACCGTTACAGTGTAGGTGGTTTTAGACCATCTCGTAGCTTATCAGA
TGAAGAGATTTATAATTGTAATTGCATTGTCTTTTAACGAGTGTTACACT
CCTTCGCATGCTTCCGACGTACTTGCTCTATTGCCTTAAATCCGCCAATG
TACAGGGGTGTATTTCTTAGTGTGTTTTTTTCTAGGTGTTGTTCAAAGTG
CAAATGGTTCCGCTTACTTGGAGACGTCCGGTACCAAACTAACGTGCGCC
GTGTATGGGCCACGTGATTACGCTAAACGTCATCAATTCCGATCTTCCGG
TAAACTCACCTGTAGTCTCACGTTTGCTCCCTTCTCTAAACCGCAACGTT
TTACTGAAATCCGGGACTCTCTAAGTACGGAATACTCTAATTTCATAGCA
GATTCTCTCATGTCCGCAGTATGTCTTGACGCTTATCCGAAATCTCAAAT
CGACGTATACGTTAATGTGTTGGAAGATAACGGGAATACCTTAAGTTATG
CTATAACGGCTGCGTCCGTTGCGTTGGCTGACGCTGGAATCGAAATGGTA
GATTTGGTGACGTCATCAAGCCTCGTTTTTAATGATGACGTCTTTTGTTT
GGACCCAGACTCCAGCGAACAAAAACACAAAGACGTTTATGGGAAAATGT
CCATAGCTTATCTACCATCTTTAAATAAGATTTCGTGTTTGCTTCAAGAT
GGCGCAGTGGAAGTTGAACGTTCTATTGAACTTGTGAACACGTGTTTAGA
GGGTTGCTTAAGGGTACATGACGTCATGAAAGAATGTCTTTTAAAGGCAC
CTAATACTGACGAGGAGAGTTGAGAGGGGAATGGAAAGAAAGTTTTTAAC
ATAATAACACGTCCGGACAGTAGTTTATTTTCCCCCTTTTTCTTCGGTTT
ATTTTAATTTAAAACTTGATTAAGTCGATGGCCCCTTCAGCTTGGAAAGA
CTCTCCGCCATCTGAATCGCCTATAGTTCGAAAGAAATTGATTGTCTCTT
ACATAACGGCCAAGCTCTGGCCTTACCTTGTAGCAAAAGTATGACAGGAA
GAGAATTTTACCCGATGGTATCTAATTACAGGAGTAGCATATCAAAAGTT
GATTGTTAATATACTCATTCTTATAATTTTACCTCATTTTACAGCTAAAA
CCTAAAACAAATTATTAAAACAAAAAATACCTTGTTGGAGAATTCAGTTT
ACCAACAAGACATTTGAACAAAGACAACAAAACTGCCGATTATTATTTTC
TTGACAAAATGGTGGTATGTATCATTATCTTGTTTTTGAAATATTCCTAA
TGATTAAGTGTGTTGTTACTAAATGCCTATCCAACGAAAAAGGAGTATTA
ATATAGAGGGGAGAGGAGACACCGGGTGGAGGGGGGCACTCAAGGTAAAT
GACATACCAGACGTGCGGCACTTAAGGGTCGGTTTTTGAGGAGACAACCC
AATCGAACTACATGTAACAAACTATTCATGGACAGTCTCCTGAACTTCAA
ATTAAAGCCTCTTAAGATTCTTTCACCGCTATTTGTTTAGCCAAATTTGA
TTAGCCAAATTTGATTAATTTCTCCGTTATTTTTTCTTGTACTTTCAGCT
TCCATTGACTTTACTGCAGACCGCTCAAAATCATCCAATGGTATTTATGT
TGCATTTTCTCTCGAAGGTTAATTCAGCGAAAAATTCTGAAAACCTGATT
TGCGAAGTTTATTCTTCTTGAAAAAAAAAGAAGTTTTATTATAGCCGACC
AATTAGTGAAAATTAGTTGACAAAAGAAACAAGGAAATTCGAAATTCGCG
AAAGTTCTTTCCCGCAAGATATTTTGAAAAGCTCGATTTGCAAAAGTTAA
TTTTTACGAACTGCCAAAATGCCGCGAATTTACTCGTCAAAGTAAAAAAC
GAAAGGTGGGGTTAATATCTTGATTTTAGGGGGTGAGATCAACACCATGA
AGTACACTTCCTTTGTTTAAAATTGTCACTATATTTTTGGAATATTTTGT
TGCTTTAAGTTGGTTGAGTTGAAAAATGGAGAAACATATAACGGACATTT
GGTCAGCTGTGATAATTGGATGAATATCAATCTGAGAGAAGTTATTTGCA
CATCAAGGGTAAGGGAAAAATTGTGCTCAAGTAGTATTTTAAAGTGTCAT
TCATTCTGATTCATTAACCTTTGACTTTCTACCAACTTTTAACCAAGAGT
ATCCAGAAAGTATCAACTTTGCGCCTGGAAAAAGTTTGCGGATTGTTTTT
TTCTATGAATATGAATATTTATTGCCAGCTATTATTCGTAGAAAATTGGG
TGTTAACACACGTTTTTTTCTTTCGTTAAGAAACACACTTTTAAGAAACA
TGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTATCAAGCATGTTGAG
GCTGAGAATGAGAAAATAAATTTTTTAATTCGGCTTTTTTTAAGAACCTT
CCAATCAAAATAAATGTTTTTTTTCTTTGCATGAAAAATAGGCTGATTAT
GTCAAAAATTTAGAAACATGTAAGAAACATTTAGGCTCAAAAGGCCGATT
TCTTAAGAAACATCGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAACA
ACGTGTATTTAATAAAGAATGGTCCTTTTAATTTAAATAACTACAAGAGT
ATTGAACTCTGAATGAAGTTGCACAGTCCATCAACGACATCTTACGTTTT
ATCCTTCTGTTTCTCCACCTTCAGGACGGTGATCGCTTTTGGAGGATGCC
AGAATGTTATGTTCGAGGAAGCACTGTCAAATATCTACGTATCCCTGATG
AGGTAAGTACTGAGAGATGGCTGTACATTTGATATTTAATTTGTTGAATA
CAGCCGTTTTAAAAGTACAGTCTCTTCACAAAATTTACTCCGTGAAATCT
GTTTGTGAAGCTAGATTATGCGCCATCTTTGATAGATAGACGTCACAATA
ATGCTTTAAATTTGGAAGTCATTTCAATCAAAATACTTAGCAAGCAAGCA
AGCAAGCTTCTACTGTAGTCTACTGCGCTTTACCTTTGTCGTCTTTTAGC
AAAAAATAGTTCTTTATTTTGTTTCACTTGCCGTGGCTTAAGAAAGAAAG
AGAAACTACAATCATGGTCGAAACATATTGAGGTTTTAGTGTATTTTCAT
GTTTTTCACAATTTAAAGTTCGGGCAAGAAATGCTATTTTAGCACTTCCA
CTTTCTTTCATTGAATATTTCGATTCAGGATGGGTTCGGTGGCTCCTAGG
CTTTATTCCATGCCTTTTTGGAGCAAATTTTGAGCTTTTGAATCCTCAGA
TCCTAAGGTCTTAAGTGTTAAGTCTCATGTTAAAACTCTACTTTCCAACT
GTAGTTTAACGCGCTTAAAAATCATTTGTGGTGTTTAAAATTTCGGAGGG
AAATCCCCTTTGTCTCAAATGCTTTGTCCATGATTGTAGTGGTTTATATA
TGATATCTGTATTTGTGTTATCCAATTTATCACAACTAGCTCATTAAACC
TCATTTAACAGGTTATTGATATGGTGAAAGAAGACGCCCTTCAAAAGAAC
CGACAACGCCATCATAACGCCAACAGACGAGGTGGTCCAAAGGGCGGACG
CGGTGGTCGAGGTGGACATCGTGGTGGTCGTGGTGGCGGCAGAGGGCGCC
CTGATAATGCTGAACGATAATTTTCATCCTGAGAATTGCTTTGTTGTTTA
TTTTATACCGTTGTTGTTGTTTTAGGGTTTCACGCCCTGGTATGATTTAT
GGGACGCCCCTAACGCCTGTTGCTTCAAAGAGACATGTATAAATGAACGG
CCCTTTTAACGGCAGAATGAATTAAAAAATTCATCTTGATGTTTCTAGAT
ATAGAAAAACTATCATAATTACTATTCGTCCTTAATCAAAAGCATTATGA
GACGTTTTGTACTGGTTGAAAAGACCAAACAAAGTTGGAATTTTTATACC
AGAATTTATTTGTGTTTTTTTAGCTCTTATAAATTTTAGGGGGAATTTTC
CCTCTTTTTTTAATTATTTAAATCAAGAAATTGAATTTTTATCAACTTGA
AAACTTTAAACGTTTCAATTTGTCTATACCTAGAAAATAAATAGTTTTTA
CAATTCCAC

Coding sequence (CDS) from alignment at scaffold_91:392060..397118-

>TCONS_00073413 ID=TCONS_00073413|Name=TCONS_00073413|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at scaffold_91:392060..397118- (Clytia hemisphaerica)
GTGTTGTTCAAAGTGCAAATGGTTCCGCTTACTTGGAGACGTCCGGTACC
AAACTAACGTGCGCCGTGTATGGGCCACGTGATTACGCTAAACGTCATCA
ATTCCGATCTTCCGGTAAACTCACCTGTAGTCTCACGTTTGCTCCCTTCT
CTAAACCGCAACGTTTTACTGAAATCCGGGACTCTCTAAGTACGGAATAC
TCTAATTTCATAGCAGATTCTCTCATGTCCGCAGTATGTCTTGACGCTTA
TCCGAAATCTCAAATCGACGTATACGTTAATGTGTTGGAAGATAACGGGA
ATACCTTAAGTTATGCTATAACGGCTGCGTCCGTTGCGTTGGCTGACGCT
GGAATCGAAATGGTAGATTTGGTGACGTCATCAAGCCTCGTTTTTAATGA
TGACGTCTTTTGTTTGGACCCAGACTCCAGCGAACAAAAACACAAAGACG
TTTATGGGAAAATGTCCATAGCTTATCTACCATCTTTAAATAAGATTTCG
TGTTTGCTTCAAGATGGCGCAGTGGAAGTTGAACGTTCTATTGAACTTGT
GAACACGTGTTTAGAGGGTTGCTTAAGGGTACATGACGTCATGAAAGAAT
GTCTTTTAAAGGCACCTAATACTGACGAGGAGAGTTGAATGCCGCTTCCA
GATAACCGCCGAATCAATGGACCACGTGAAACTTATCAAATCACCTCATT
TTTGACGCCACAGCACAACGACGCCGATGTGCCAAGCACCGGGATTGTGA
ACGATAAAGGATTGAGGAAAGACACACGACGTACAGATGAAGTGCGTCCG
ATTTATTTGAAAGCAGGTGTTGTTCAAAGTGCAAATGGTTCCGCTTACTT
GGAGACGTCCGGTACCAAACTAACGTGCGCCGTGTATGGGCCACGTGATT
ACGCTAAACGTCATCAATTCCGATCTTCCGGTAAACTCACCTGTAGTCTC
ACGTTTGCTCCCTTCTCTAAACCGCAACGTTTTACTGAAATCCGGGACTC
TCTAAGTACGGAATACTCTAATTTCATAGCAGATTCTCTCATGTCCGCAG
TATGTCTTGACGCTTATCCGAAATCTCAAATCGACGTATACGTTAATGTG
TTGGAAGATAACGGGAATACCTTAAGTTATGCTATAACGGCTGCGTCCGT
TGCGTTGGCTGACGCTGGAATCGAAATGGTAGATTTGGTGACGTCATCAA
GCCTCGTTTTTAATGATGACGTCTTTTGTTTGGACCCAGACTCCAGCGAA
CAAAAACACAAAGACGTTTATGGGAAAATGTCCATAGCTTATCTACCATC
TTTAAATAAGATTTCGTGTTTGCTTCAAGATGGCGCAGTGGAAGTTGAAC
GTTCTATTGAACTTGTGAACACGTGTTTAGAGGGTTGCTTAAGGGTACAT
GACGTCATGAAAGAATGTCTTTTAAAGGCACCTAATACTGACGAGGAGAG
TTGAATGCCGCTTCCAGATAACCGCCGAATCAATGGACCACGTGAAACTT
ATCAAATCACCTCATTTTTGACGCCACAGCACAACGACGCCGATGTGCCA
AGCACCGGGATTGTGAACGATAAAGGATTGAGGAAAGACACACGACGTAC
AGATGAAGTGCGTCCGATTTATTTGAAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045558XLOC_045558Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073413-proteinTCONS_00073413-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073413-exon-scaffold_91-1575043694:396855..397118TCONS_00073413-exon-scaffold_91-1575043694:396855..397118Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1575043694:394905..395983TCONS_00073413-exon-scaffold_91-1575043694:394905..395983Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1575043694:394529..394570TCONS_00073413-exon-scaffold_91-1575043694:394529..394570Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1575043694:394061..394159TCONS_00073413-exon-scaffold_91-1575043694:394061..394159Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1575043694:393367..393444TCONS_00073413-exon-scaffold_91-1575043694:393367..393444Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1575043694:392060..392657TCONS_00073413-exon-scaffold_91-1575043694:392060..392657Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1510915933:396855..397118TCONS_00073413-exon-scaffold_91-1510915933:396855..397118Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1510915933:394905..395983TCONS_00073413-exon-scaffold_91-1510915933:394905..395983Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1510915933:394529..394570TCONS_00073413-exon-scaffold_91-1510915933:394529..394570Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1510915933:394061..394159TCONS_00073413-exon-scaffold_91-1510915933:394061..394159Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1510915933:393367..393444TCONS_00073413-exon-scaffold_91-1510915933:393367..393444Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1510915933:392060..392657TCONS_00073413-exon-scaffold_91-1510915933:392060..392657Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1491911889:396855..397118TCONS_00073413-exon-scaffold_91-1491911889:396855..397118Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1491911889:394905..395983TCONS_00073413-exon-scaffold_91-1491911889:394905..395983Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1491911889:394529..394570TCONS_00073413-exon-scaffold_91-1491911889:394529..394570Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1491911889:394061..394159TCONS_00073413-exon-scaffold_91-1491911889:394061..394159Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1491911889:393367..393444TCONS_00073413-exon-scaffold_91-1491911889:393367..393444Clytia hemisphaericaexon
TCONS_00073413-exon-scaffold_91-1491911889:392060..392657TCONS_00073413-exon-scaffold_91-1491911889:392060..392657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:392060..397118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.0066	44.438	31.2957	30.0943	27.539	22.2849	28.5223	33.5091	31.7659	29.7049	23.7107	21.9688	18.8543	21.5648	23.5323	25.4753	38.1817	33.7762	12.0622	13.2695	24.2979	24.9297	65.3852	54.1371	26.2595	28.6982	27.4777	23.3109	32.7171	34.4439
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
Blast
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BLAST of TCONS_00073413 vs. Swiss-Prot (Human)
Match: LSM4 (U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.375e-50
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 3 
Query: 1341 VLPLTLLQTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECYVRGSTVKYLRIPDEVIDMVKEDALQKNR 1604
            +LPL+LL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGD+FWRMPECY+RGST+KYLRIPDE+IDMVKE+ + K R
Sbjct:    1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGR 88
The following BLAST results are available for this feature:
BLAST of TCONS_00073413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM44.375e-5086.36U6 snRNA-associated Sm-like protein LSm4 OS=Homo s... [more]
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