TCONS_00073318-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073318-protein
Unique NameTCONS_00073318-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073318-protein ID=TCONS_00073318-protein|Name=TCONS_00073318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MSGGLAPSKSTVYVGNLPFSLTNNDLHKVFEKFGRIAKVTILRDKVTRTS
KGVAFVQFIERDSAITCCKSVNEKTLFERKIKCVIAKDNGRASEFIRKKD
YPDKSSCYECGETGHLSYACPKNLLGSREPPPKKEKKTKKEKAEEKEHSK
NLIKSYYDADEANDGVNEEEQGEDPYESSLSYAIALDSSQQKRHFSSIVV
QPSTSRTSTDYDGYKDNNDREEESYVKRKKYKPSSYFSDEEEEDES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045485XLOC_045485Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073318TCONS_00073318Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000504RRM_dom
IPR034219ZCRB1_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 106..122
e-value: 0.0036
score: 26.3
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 99..145
e-value: 3.2E-9
score: 36.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 106..122
e-value: 3.8E-5
score: 23.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 107..122
score: 10.065
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 95..123
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..84
e-value: 6.4E-22
score: 88.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 12..82
e-value: 5.1E-19
score: 67.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..88
score: 17.114
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 7..92
NoneNo IPR availableGENE3D3.30.70.330coord: 4..98
e-value: 2.3E-24
score: 85.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..246
IPR034219ZCRB1, RNA recognition motifCDDcd12393RRM_ZCRB1coord: 9..86
e-value: 1.90357E-37
score: 127.046

Blast
[Close]
BLAST of TCONS_00073318-protein vs. Swiss-Prot (Human)
Match: ZCRB1 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.289e-65
Identity = 128/246 (52.03%), Postives = 162/246 (65.85%), Query Frame = 0 
Query:    1 MSGGLAPSKSTVYVGNLPFSLTNNDLHKVFEKFGRIAKVTILRDKVTRTSKGVAFVQFIERDSAITCCKSVNEKTLFERKIKCVIAKDNGRASEFIRKKDYPDKSSCYECGETGHLSYACPKNLLGSREPPPKKEKKTKKEKAEEKEHSKNLIKSYYDADEANDGVNEEEQGEDPYESSLSYAIALDSS----QQKRHFSSIVVQPSTSRTSTDYDGYKDNNDREEESYVKRKKYKPSSYFSDEEE 242
            MSGGLAPSKSTVYV NLPFSLTNNDL+++F K+G++ KVTI++DK TR SKGVAF+ F+++DSA  C +++N K LF R IK  IA DNGRA+EFIR+++Y DKS CYECGE+GHLSYACPKN+LG REPP KKEKK KK+  E +E  +                  E++GEDP   SLS AIA   +    +QK+       +PS+   ST  D              +R + K S+YFSDEEE
Sbjct:    1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREPPKKKEKKKKKKAPEPEEEIEE-------------VEESEDEGEDPALDSLSQAIAFQQAKIEEEQKKW------KPSSGVPSTSDDS-------------RRPRIKKSTYFSDEEE 214
The following BLAST results are available for this feature:
BLAST of TCONS_00073318-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCRB11.289e-6552.03Zinc finger CCHC-type and RNA-binding motif-contai... [more]
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