TCONS_00072852-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072852-protein
Unique Name	TCONS_00072852-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	196

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072852-protein ID=TCONS_00072852-protein|Name=TCONS_00072852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MSVSNEFTVLSWNIDGVEENCLHARTEAVIKYIEDTKPTIVMLQEVVPQS
FTTLVTSLSTLYDVRSISNEGYFNVMLFLKHSSVELNGTVKGDFFQNTRM
GRHYLLQRFQIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPND
YNVIFSGDMNLRDYEVQNLGGLPVILRTHGKQWGKTPQPNTHLILS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045216	XLOC_045216	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072852	TCONS_00072852	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	3.60.10.10		coord: 2..185 e-value: 1.8E-23 score: 82.7
IPR005135	Endonuclease/exonuclease/phosphatase	SUPERFAMILY	56219	DNase I-like	coord: 5..164

Blast

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BLAST of TCONS_00072852-protein vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.330e-30
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 0

Query:    7 FTVLSWNIDGVEENCLHARTEAVIKYIEDTKPTIVMLQEVVPQSFTTLVTSLSTLYDVRSISNEGYFNVMLFLKHSSVELNGTVKGDFFQNTRMGRHYLLQRFQIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPNDYNVIFSGDMNLRDYEVQNLGGLP 173
            F++++WNIDG++ N L  R   V  Y+    P ++ LQEV+P  ++ L    S+ Y++ +   EGYF  ++ LK S V+L    +   F +T+M R+ L     +    + ++TSHLES    +  R NQLK  L+KM ++P    VIF+GD NLRD EV   GGLP
Sbjct:  114 FSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYL-KKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLP 277

The following BLAST results are available for this feature:

BLAST of TCONS_00072852-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072852-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TYDP2	2.330e-30	38.32	Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN...	[more]

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TCONS_00072852-protein (polypeptide) - C. hemisphaerica