TCONS_00072852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072852
Unique NameTCONS_00072852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072852 ID=TCONS_00072852|Name=TCONS_00072852|organism=Clytia hemisphaerica|type=transcript|length=1824bp
CTTGATTTgcttgattagtaagttttatatAGAAGATATTTAAGTTTTat
caaatttgaattaaaacttCTAGAGGTTAATACAATCTCTTTGGATTTCT
AAacgtttttaagaaaattaaaatagtTTCGTGTGCCCTAGGCTGGCCAT
GCCTGAGCTAATGACAACAAATTTTTTATTAAAGTTTTCCCCGGATATCG
GCCTGACTTACCGCTGAAAGGTAAGGAGACGGGTTGGTACCCTTTGTAAT
TCCTGGGTCAAGGCTCAACAGAGTGGACACGAATTAAGTTTATAATAATC
ACTCAATACTAAAATACCGTGGTACCAACaataaattccaaataaataTA
TACAAAAGCTCACCGTGGTTTGTTGCGACTTGGGTTTTAGTTCNATCCGC
GTCCGGATGCGCCGCTCACCGTGGTTTGTCGCGACTTGGGTTTTAGTTCA
CTCTGCGGAGATCCCCAACTCCGCAGTCTTTTCCGTCTCTGGGTTTAATT
TCAGCAATGCCATTTATACCaaatcttcaatttcttctGCCTGGTCGAGC
CGCACGGCCGGCCAAGTCTATAGTCAAAAAGCAGGTGTTTTCAAAACCGA
AATGTTCTTTTCATAGCTTGATAGCTTATTATTAGTTCAGATTTATTCTA
TTTCTAGATATTCTATAGTTCAATGACAACAGGTTATTAATCTGgcggat
tttgaccaaatccgccaaattaagttcccgccaaaatttcttctcttaag
gtactcCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcat
gttttttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgT
CGAGCATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAA
GGTTTTTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAAT
GTCTGTATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAG
AGGAGAATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAA
GATACCAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATT
CACCACTTTAGTGACATCTCTATCAACATTGTACGATGTTAGGTCAATAT
CAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTGTC
GAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATGGG
ACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGCGG
TGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAA
AATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTA
CAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAA
ATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGA
AAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATAACAATAAA
TACCTCCCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTATAAAAG
AACTGAATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGGACTGG
AGAGGTTGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGTTAGGA
AAATTcgcttttttagatttttaactACTTTTCATCTTATTTTGTGCAAA
AGTAAAAGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGCCATTT
TATAAAGGTTGGTATTGAATTTTT
Run BLAST on NCBI

protein sequence of TCONS_00072852-protein

>TCONS_00072852-protein ID=TCONS_00072852-protein|Name=TCONS_00072852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MSVSNEFTVLSWNIDGVEENCLHARTEAVIKYIEDTKPTIVMLQEVVPQS
FTTLVTSLSTLYDVRSISNEGYFNVMLFLKHSSVELNGTVKGDFFQNTRM
GRHYLLQRFQIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPND
YNVIFSGDMNLRDYEVQNLGGLPVILRTHGKQWGKTPQPNTHLILS
Run BLAST on NCBI

transcript from alignment at scaffold_86:299076..301354+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072852 ID=TCONS_00072852|Name=TCONS_00072852|organism=Clytia hemisphaerica|type=transcript|length=2279bp|location=Sequence derived from alignment at scaffold_86:299076..301354+ (Clytia hemisphaerica)
CTTGATTTgcttgattagtaagttttatatAGAAGATATTTAAGTTTTat caaatttgaattaaaacttCTAGAGGTTAATACAATCTCTTTGGATTTCT AAacgtttttaagaaaattaaaatagtTTCGTGTGCCCTAGGCTGGCCAT GCCTGAGCTAATGACAACAAATTTTTTATTAAAGTTTTCCCCGGATATCG GCCTGACTTACCGCTGAAAGGTAAGGAGACGGGTTGGTACCCTTTGTAAT TCCTGGGTCAAGGCTCAACAGAGTGGACACGAATTAAGTTTATAATAATC ACTCAATACTAAAATACCGTGGTACCAACaataaattccaaataaataTA TACAAAAGCTCACCGTGGTTTGTTGCGACTTGGGTTTTAGTTCNATCCGC GTCCGGATGCGCCGCTCACCGTGGTTTGTCGCGACTTGGGTTTTAGTTCA CTCTGCGGAGATCCCCAACTCCGCAGTCTTTTCCGTCTCTGGGTTTAATT TCAGCAATGCCATTTATACCaaatcttcaatttcttctGCCTGGTCGAGC CGCACGGCCGGCCAAGTCTATAGTCAAAAAGCAGGTGTTTTCAAAACCGA AATGTTCTTTTCATAGCTTGATAGCTTATTATTAGTTCAGATTTATTCTA TTTCTAGATATTCTATAGTTCAATGACAACAGGTTATTAATCTGgcggat tttgaccaaatccgccaaattaagttcccgccaaaatttcttctcttaag gtactcCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcat gttttttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgT CGAGCATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAA GGTTTTTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAAT GTCTGTATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAG AGGAGAATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAA GATACCAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATT CACCACTTTAGTGACATCTCTATCAACGTAAGCAACTTttgattctttga ttttttatatttatgtttGTTAAGTTACgcaatttccgccattatggaag cagaCGCTCGAATCTGTATAGATTCGTAATAGTAATTTAACCAAACTTGA ATAACCTCCATTTCCAGTTCAAATTTTAATTGGTAAGGTCCCTTTGTTCA TGATATGAAAATCCTGGGAAATCCAAAATCAGTTGAAAGTTTGGGACCGC TTTTGATTCATTGCTCCGTTTTATTGAAGTTTGCTGAAACTTTTGAACAA TTCTTAAGGTAGGCACgataaaagaaattgaaatctGATAGCATTAGATA AATTTTTCAGGAAAGTTTTTAGCCATTTTAGGGTACTCACTAAGTGGTCA AAGGGAACAATCTGGTAAGCCCTTCCCATTTAGTATCTTGAAAGATTGCT CACTGGTTTTATAATCAATTTATCTATTTTAGATTGTACGATGTTAGGTC AATATCAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCAT CTGTCGAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGA ATGGGACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGT AGCGGTGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAA GACAAAATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAAT GATTACAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGT ACAAAATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAAT GGGGAAAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATAACA ATAAATACCTCCCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTAT AAAAGAACTGAATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGG ACTGGAGAGGTTGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGT TAGGAAAATTcgcttttttagatttttaactACTTTTCATCTTATTTTGT GCAAAAGTAAAAGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGC CATTTTATAAAGGTTGGTATTGAATTTTT

Coding sequence (CDS) from alignment at scaffold_86:299076..301354+

>TCONS_00072852 ID=TCONS_00072852|Name=TCONS_00072852|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_86:299076..301354+ (Clytia hemisphaerica)
ATGTCTGTATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGT
AGAGGAGAATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTG
AAGATACCAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCA
TTCACCACTTTAGTGACATCTCTATCAACATTGTACGATGTTAGGTCAAT
ATCAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTG
TCGAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATG
GGACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGC
GGTGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGAC
AAAATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGAT
TACAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACA
AAATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGG
GAAAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATGTCTGTA
TCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAGAGGAGAA
TTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAAGATACCA
AACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATTCACCACT
TTAGTGACATCTCTATCAACATTGTACGATGTTAGGTCAATATCAAATGA
AGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTGTCGAGCTTA
ACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATGGGACGACAT
TATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGCGGTGATAAC
ATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAAAATCAAT
tgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTACAATGTG
ATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAAATTTAGG
TGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGAAAAACCC
CGCAACCGAATACACATTTGATCTTGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045216XLOC_045216Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072852-proteinTCONS_00072852-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072852-exon-scaffold_86-1491911889:299076..300202TCONS_00072852-exon-scaffold_86-1491911889:299076..300202Clytia hemisphaericaexon
TCONS_00072852-exon-scaffold_86-1510915933:299076..300202TCONS_00072852-exon-scaffold_86-1510915933:299076..300202Clytia hemisphaericaexon
TCONS_00072852-exon-scaffold_86-1575043694:299076..300202TCONS_00072852-exon-scaffold_86-1575043694:299076..300202Clytia hemisphaericaexon
TCONS_00072852-exon-scaffold_86-1491911889:300658..301354TCONS_00072852-exon-scaffold_86-1491911889:300658..301354Clytia hemisphaericaexon
TCONS_00072852-exon-scaffold_86-1510915933:300658..301354TCONS_00072852-exon-scaffold_86-1510915933:300658..301354Clytia hemisphaericaexon
TCONS_00072852-exon-scaffold_86-1575043694:300658..301354TCONS_00072852-exon-scaffold_86-1575043694:300658..301354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:299076..301354 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46338 1.14751 1.0641 0.679837 1.08074 1.15882 0.674645 0.943823 0.302981 0.426668 0.757116 0.539143 0.825965 0.265554 0.733988 0.716286 0.500171 0.99518 0.724336 0.659923 0.416469 0.437266 1.48238 0.742535 0.162939 0.952997 0.322166 0.353748 0.913917 1.02951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
BLAST of TCONS_00072852 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.641e-35
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  967 FTVLSWNIDGVEENCLHARTEAVIKYIEDTKPTIVMLQEVVPQXXXXXXXXXXXXYDVRSISNEGYFNVMLFLKHSSVELNGTVKGDFFQNTRMGRHYLLQRFQIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPNDYNVIFSGDMNLRDYEVQNLGGLP 1467
            F++++WNIDG++ N L  R   V  Y+    P ++ LQEV+P  ++ L    S  Y++ +   EGYF  ++ LK S V+L  + +   F +T+M R+ L     +    + ++TSHLES    +  R NQLK  L+KM ++P    VIF+GD NLRD EV   GGLP
Sbjct:  114 FSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSN-YEIITGHEEGYFTAIM-LKKSRVKLK-SQEIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLP 277          

HSP 2 Score: 59.6918 bits (143), Expect = 2.641e-35
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 3
Query: 1467 SHITDAWEAMGKNPATEYTFDLELNNNKYLPDNPQKRFDRMYYK-RTESIAVQCVGFELVGLERLPCGMFTSDHFGM 1694
            ++I D WE +GK    +YT+D ++N+N  +    + RFDR++++   E   +     +L+GLE+L CG F SDH+G+
Sbjct:  278 NNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGL 354          
The following BLAST results are available for this feature:
BLAST of TCONS_00072852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP22.641e-3538.32Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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