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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072852 ID=TCONS_00072852|Name=TCONS_00072852|organism=Clytia hemisphaerica|type=transcript|length=1824bp
CTTGATTTgcttgattagtaagttttatatAGAAGATATTTAAGTTTTat
caaatttgaattaaaacttCTAGAGGTTAATACAATCTCTTTGGATTTCT
AAacgtttttaagaaaattaaaatagtTTCGTGTGCCCTAGGCTGGCCAT
GCCTGAGCTAATGACAACAAATTTTTTATTAAAGTTTTCCCCGGATATCG
GCCTGACTTACCGCTGAAAGGTAAGGAGACGGGTTGGTACCCTTTGTAAT
TCCTGGGTCAAGGCTCAACAGAGTGGACACGAATTAAGTTTATAATAATC
ACTCAATACTAAAATACCGTGGTACCAACaataaattccaaataaataTA
TACAAAAGCTCACCGTGGTTTGTTGCGACTTGGGTTTTAGTTCNATCCGC
GTCCGGATGCGCCGCTCACCGTGGTTTGTCGCGACTTGGGTTTTAGTTCA
CTCTGCGGAGATCCCCAACTCCGCAGTCTTTTCCGTCTCTGGGTTTAATT
TCAGCAATGCCATTTATACCaaatcttcaatttcttctGCCTGGTCGAGC
CGCACGGCCGGCCAAGTCTATAGTCAAAAAGCAGGTGTTTTCAAAACCGA
AATGTTCTTTTCATAGCTTGATAGCTTATTATTAGTTCAGATTTATTCTA
TTTCTAGATATTCTATAGTTCAATGACAACAGGTTATTAATCTGgcggat
tttgaccaaatccgccaaattaagttcccgccaaaatttcttctcttaag
gtactcCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcat
gttttttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgT
CGAGCATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAA
GGTTTTTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAAT
GTCTGTATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAG
AGGAGAATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAA
GATACCAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATT
CACCACTTTAGTGACATCTCTATCAACATTGTACGATGTTAGGTCAATAT
CAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTGTC
GAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATGGG
ACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGCGG
TGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAA
AATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTA
CAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAA
ATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGA
AAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATAACAATAAA
TACCTCCCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTATAAAAG
AACTGAATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGGACTGG
AGAGGTTGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGTTAGGA
AAATTcgcttttttagatttttaactACTTTTCATCTTATTTTGTGCAAA
AGTAAAAGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGCCATTT
TATAAAGGTTGGTATTGAATTTTT Run BLAST on NCBI protein sequence of TCONS_00072852-protein >TCONS_00072852-protein ID=TCONS_00072852-protein|Name=TCONS_00072852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MSVSNEFTVLSWNIDGVEENCLHARTEAVIKYIEDTKPTIVMLQEVVPQS
FTTLVTSLSTLYDVRSISNEGYFNVMLFLKHSSVELNGTVKGDFFQNTRM
GRHYLLQRFQIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPND
YNVIFSGDMNLRDYEVQNLGGLPVILRTHGKQWGKTPQPNTHLILS Run BLAST on NCBI transcript from alignment at scaffold_86:299076..301354+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072852 ID=TCONS_00072852|Name=TCONS_00072852|organism=Clytia hemisphaerica|type=transcript|length=2279bp|location=Sequence derived from alignment at scaffold_86:299076..301354+ (Clytia hemisphaerica)
CTTGATTTgcttgattagtaagttttatatAGAAGATATTTAAGTTTTat
caaatttgaattaaaacttCTAGAGGTTAATACAATCTCTTTGGATTTCT
AAacgtttttaagaaaattaaaatagtTTCGTGTGCCCTAGGCTGGCCAT
GCCTGAGCTAATGACAACAAATTTTTTATTAAAGTTTTCCCCGGATATCG
GCCTGACTTACCGCTGAAAGGTAAGGAGACGGGTTGGTACCCTTTGTAAT
TCCTGGGTCAAGGCTCAACAGAGTGGACACGAATTAAGTTTATAATAATC
ACTCAATACTAAAATACCGTGGTACCAACaataaattccaaataaataTA
TACAAAAGCTCACCGTGGTTTGTTGCGACTTGGGTTTTAGTTCNATCCGC
GTCCGGATGCGCCGCTCACCGTGGTTTGTCGCGACTTGGGTTTTAGTTCA
CTCTGCGGAGATCCCCAACTCCGCAGTCTTTTCCGTCTCTGGGTTTAATT
TCAGCAATGCCATTTATACCaaatcttcaatttcttctGCCTGGTCGAGC
CGCACGGCCGGCCAAGTCTATAGTCAAAAAGCAGGTGTTTTCAAAACCGA
AATGTTCTTTTCATAGCTTGATAGCTTATTATTAGTTCAGATTTATTCTA
TTTCTAGATATTCTATAGTTCAATGACAACAGGTTATTAATCTGgcggat
tttgaccaaatccgccaaattaagttcccgccaaaatttcttctcttaag
gtactcCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcat
gttttttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgT
CGAGCATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAA
GGTTTTTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAAT
GTCTGTATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAG
AGGAGAATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAA
GATACCAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATT
CACCACTTTAGTGACATCTCTATCAACGTAAGCAACTTttgattctttga
ttttttatatttatgtttGTTAAGTTACgcaatttccgccattatggaag
cagaCGCTCGAATCTGTATAGATTCGTAATAGTAATTTAACCAAACTTGA
ATAACCTCCATTTCCAGTTCAAATTTTAATTGGTAAGGTCCCTTTGTTCA
TGATATGAAAATCCTGGGAAATCCAAAATCAGTTGAAAGTTTGGGACCGC
TTTTGATTCATTGCTCCGTTTTATTGAAGTTTGCTGAAACTTTTGAACAA
TTCTTAAGGTAGGCACgataaaagaaattgaaatctGATAGCATTAGATA
AATTTTTCAGGAAAGTTTTTAGCCATTTTAGGGTACTCACTAAGTGGTCA
AAGGGAACAATCTGGTAAGCCCTTCCCATTTAGTATCTTGAAAGATTGCT
CACTGGTTTTATAATCAATTTATCTATTTTAGATTGTACGATGTTAGGTC
AATATCAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCAT
CTGTCGAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGA
ATGGGACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGT
AGCGGTGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAA
GACAAAATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAAT
GATTACAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGT
ACAAAATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAAT
GGGGAAAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATAACA
ATAAATACCTCCCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTAT
AAAAGAACTGAATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGG
ACTGGAGAGGTTGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGT
TAGGAAAATTcgcttttttagatttttaactACTTTTCATCTTATTTTGT
GCAAAAGTAAAAGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGC
CATTTTATAAAGGTTGGTATTGAATTTTT Coding sequence (CDS) from alignment at scaffold_86:299076..301354+ >TCONS_00072852 ID=TCONS_00072852|Name=TCONS_00072852|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_86:299076..301354+ (Clytia hemisphaerica)
ATGTCTGTATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGT
AGAGGAGAATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTG
AAGATACCAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCA
TTCACCACTTTAGTGACATCTCTATCAACATTGTACGATGTTAGGTCAAT
ATCAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTG
TCGAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATG
GGACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGC
GGTGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGAC
AAAATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGAT
TACAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACA
AAATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGG
GAAAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATGTCTGTA
TCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAGAGGAGAA
TTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAAGATACCA
AACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATTCACCACT
TTAGTGACATCTCTATCAACATTGTACGATGTTAGGTCAATATCAAATGA
AGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTGTCGAGCTTA
ACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATGGGACGACAT
TATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGCGGTGATAAC
ATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAAAATCAAT
tgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTACAATGTG
ATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAAATTTAGG
TGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGAAAAACCC
CGCAACCGAATACACATTTGATCTTGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072852-exon-scaffold_86-1491911889:299076..300202 | TCONS_00072852-exon-scaffold_86-1491911889:299076..300202 | Clytia hemisphaerica | exon |
| TCONS_00072852-exon-scaffold_86-1510915933:299076..300202 | TCONS_00072852-exon-scaffold_86-1510915933:299076..300202 | Clytia hemisphaerica | exon |
| TCONS_00072852-exon-scaffold_86-1575043694:299076..300202 | TCONS_00072852-exon-scaffold_86-1575043694:299076..300202 | Clytia hemisphaerica | exon |
| TCONS_00072852-exon-scaffold_86-1491911889:300658..301354 | TCONS_00072852-exon-scaffold_86-1491911889:300658..301354 | Clytia hemisphaerica | exon |
| TCONS_00072852-exon-scaffold_86-1510915933:300658..301354 | TCONS_00072852-exon-scaffold_86-1510915933:300658..301354 | Clytia hemisphaerica | exon |
| TCONS_00072852-exon-scaffold_86-1575043694:300658..301354 | TCONS_00072852-exon-scaffold_86-1575043694:300658..301354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:299076..301354 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
BLAST of TCONS_00072852 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.641e-35 Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query: 967 FTVLSWNIDGVEENCLHARTEAVIKYIEDTKPTIVMLQEVVPQXXXXXXXXXXXXYDVRSISNEGYFNVMLFLKHSSVELNGTVKGDFFQNTRMGRHYLLQRFQIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPNDYNVIFSGDMNLRDYEVQNLGGLP 1467
F++++WNIDG++ N L R V Y+ P ++ LQEV+P ++ L S Y++ + EGYF ++ LK S V+L + + F +T+M R+ L + + ++TSHLES + R NQLK L+KM ++P VIF+GD NLRD EV GGLP
Sbjct: 114 FSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSN-YEIITGHEEGYFTAIM-LKKSRVKLK-SQEIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLP 277 HSP 2 Score: 59.6918 bits (143), Expect = 2.641e-35 Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 3
Query: 1467 SHITDAWEAMGKNPATEYTFDLELNNNKYLPDNPQKRFDRMYYK-RTESIAVQCVGFELVGLERLPCGMFTSDHFGM 1694
++I D WE +GK +YT+D ++N+N + + RFDR++++ E + +L+GLE+L CG F SDH+G+
Sbjct: 278 NNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGL 354
The following BLAST results are available for this feature:
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