TCONS_00072729-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072729-protein
Unique NameTCONS_00072729-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072729-protein ID=TCONS_00072729-protein|Name=TCONS_00072729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MRECISIHIGQAGCQIGSSCWELYCLEHGISPDGTMKDSTNNSDSFTSFF
LETGAGKQVPRAVFVDLEPTVVDEIRAGPYRGLFHPDQMVTGKEDAANNY
ARGHYTIGREVIDPVLDRIRKLVDQCSGLQGFLLFHSFGGGTGSGFSALL
MERLSVEYGKKSKLQVTVYPAPRVSTAVVEPYNAVLTTHTTLEHSDCAFM
VDNEAIYDICRRNLDIDRPAYANLNRLISQVVSSITASLRFDGSLNVDLN
EFQTNLVPYPRIHFPMATYAPVVSAEKSFHESYSVQEITNSCFEPQMQLV
KCDPRHGKYMACCLLYRGDVVPKDVNAAISTLKTKRTIQFVDWCPTGFKI
GINYQPPTVVPGGDMAKVSRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRA
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEISIDAQAEEDEEDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045140XLOC_045140Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072729TCONS_00072729Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 415..442
NoneNo IPR availableGENE3D1.10.287.600coord: 381..432
e-value: 3.5E-30
score: 103.2
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..432
e-value: 0.0
score: 874.941
IPR000217TubulinPRINTSPR01161TUBULINcoord: 92..103
score: 65.77
coord: 175..188
score: 69.33
coord: 150..171
score: 43.25
coord: 50..69
score: 65.13
coord: 131..149
score: 67.64
coord: 105..129
score: 53.41
coord: 10..30
score: 65.69
coord: 189..209
score: 59.18
coord: 377..405
score: 56.76
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 344..357
score: 90.52
coord: 211..223
score: 70.98
coord: 158..169
score: 72.83
coord: 382..398
score: 80.28
coord: 42..55
score: 55.7
coord: 357..376
score: 81.72
coord: 18..33
score: 79.2
coord: 419..435
score: 77.61
coord: 318..339
score: 82.28
coord: 145..157
score: 68.97
coord: 85..98
score: 74.49
coord: 271..286
score: 59.3
coord: 117..125
score: 74.23
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 245..390
e-value: 2.1E-51
score: 186.7
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 260..388
e-value: 1.6E-49
score: 167.2
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 263..380
e-value: 3.6E-56
score: 187.9
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 46..243
e-value: 4.2E-76
score: 268.8
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..210
e-value: 6.5E-66
score: 222.2
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..262
e-value: 2.9E-124
score: 413.3
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..241
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 139..145
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 243..432

Blast
[Close]
BLAST of TCONS_00072729-protein vs. Swiss-Prot (Human)
Match: TBA4A (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 371/445 (83.37%), Postives = 414/445 (93.03%), Query Frame = 0 
Query:    1 MRECISIHIGQAGCQIGSSCWELYCLEHGISPDGTM---KDSTNNSDSFTSFFLETGAGKQVPRAVFVDLEPTVVDEIRAGPYRGLFHPDQMVTGKEDAANNYARGHYTIGREVIDPVLDRIRKLVDQCSGLQGFLLFHSFGGGTGSGFSALLMERLSVEYGKKSKLQVTVYPAPRVSTAVVEPYNAVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIDRPAYANLNRLISQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPMATYAPVVSAEKSFHESYSVQEITNSCFEPQMQLVKCDPRHGKYMACCLLYRGDVVPKDVNAAISTLKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDMAKVSRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEISIDAQAEEDE 442
            MRECIS+H+GQAG Q+G++CWELYCLEHGI PDG M   K      DSFT+FF ETGAGK VPRAVFVDLEPTV+DEIR GPYR LFHP+Q++TGKEDAANNYARGHYTIG+E+IDPVLDRIRKL DQC+GLQGFL+FHSFGGGTGSGF++LLMERLSV+YGKKSKL+ ++YPAP+VSTAVVEPYN++LTTHTTLEHSDCAFMVDNEAIYDICRRNLDI+RP Y NLNRLISQ+VSSITASLRFDG+LNVDL EFQTNLVPYPRIHFP+ATYAPV+SAEK++HE  SV EITN+CFEP  Q+VKCDPRHGKYMACCLLYRGDVVPKDVNAAI+ +KTKR+IQFVDWCPTGFK+GINYQPPTVVPGGD+AKV RAVCMLSNTTAIAEAW+RLD+KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEE+ ID+  +EDE
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDSYEDEDE 445
The following BLAST results are available for this feature:
BLAST of TCONS_00072729-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA4A0.000e+083.37Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
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