TCONS_00072729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072729
Unique NameTCONS_00072729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072729 ID=TCONS_00072729|Name=TCONS_00072729|organism=Clytia hemisphaerica|type=transcript|length=2109bp
CCCTCCTAGAAAATATTTCTGTTCATTTATGATTGGAGGGAGGTAGCATC
GACTGCTTTTCATATCCTAAAGATTTTCCAGTTTGCTTTTTAGTGTGTCG
TTACTCATAAAGAAAGCATCCAAAAATGCGAGAGTGTATCTCAATTCATA
TTGGACAAGCTGGTTGTCAAATCGGTAGCTCATGTTGGGAATTGTATTGT
TTGGAGCATGGAATCTCACCTGATGGAACAATGAAGGATTCAACAAACAA
CAGTGATTCGTtcacttctttctttcttgaGACTGGTGCTGGCAAACAAG
TCCCCAGAGCTGTTTTTGTTGACTTGGAACCTACTGTAGTTGATGAGATT
CGTGCAGGACCATATAGAGGTCTTTTCCACCCAGATCAAATGGTAACTGG
AAAAGAAGACGCAGCAAACAACTATGCACGAGGTCACTACACCATCGGTC
GAGAAGTTATTGACCCAGTCTTGGATAGAATCCGAAAGCTGGTCGATCAA
TGCAGTGGTTTACAAGGCTTCTTATTATTCCATTCTTTTGGTGGAGGCAC
TGGTAGTGGGTTCTCAGCTCTACTTATGGAGCGCCTTTCCGTAGAATATG
GAAAGAAATCCAAGTTGCAAGTCACTGTCTATCCAGCACCGCGAGTCTCC
ACAGCTGTTGTTGAACCATACAACGCTGTCTTGACTACACATACCACTTT
GGAACACTCCGATTGTGCTTTCATGGTTGATAACGAAGCCATTTATGATA
TCTGCCGACGAAACTTGGATATTGATCGGCCAGCTTATGCAAATCTGAAT
CGTTTGATCAGCCAAGTCGTCTCCTCAATCACTGCATCTCTCAGGTTTGA
CGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTCCAT
ACCCTAGAATCCATTTCCCGATGGCTACATACGCTCCTGTGGTTTCTGCT
GAGAAGTCTTTCCATGAAAGTTACTCCGTTCAAGAAATCACTAATAGTTG
CTTCGAACCACAAATGCAATTGGTCAAATGCGATCCAAGACACGGCAAAT
ACATGGCATGCTGTTTACTTTACCGTGGCGATGTTGTGCCAAAAGACGTC
AATGCAGCAATATCAACACTGAAAACTAAACGCACTATCCAATTTGTCGA
TTGGTGTCCAACCGGATTCAAAATTGGAATCAATTACCAGCCGCCAACTG
TTGTTCCTGGAGGAGATATGGCTAAAGTTTCCAGAGCTGTTTGCATGCTA
TCTAACACTACAGCCATTGCTGAAGCATGGTCTAGATTGGATTACAAATT
CGATTTGATGTACGCTAAACGTGCTTTTGTTCACTGGTATGTCGGAGAAG
GTATGGAAGAAGGTGAGTTTTCGGAGGCTCGTGAAGATTTAGCTGCTCTT
GAGAAAGATTACGAAGAAATAAGTATTGATGCACAAGCAGAAGAAGATGA
AGAAGATTATTAAAGAACATTTTGAATTTTTTTTTTTTTGCGTATTGGTA
ACGATTGGAAGATATTTAACGAAATGTTTTTATCTAACGGCGCAACTATT
TTGCGAGGAAGAGGAAGAAAATTTCTCATCTCCAACTCATTTGGGCCAAT
TGGTTTGGTAAACTTAAAACGTCATAATACACCTACACATTTTATAAAAA
TTATGCTGGTAGAGACCTTCTTATATATAAAAGTCCTTCAGAAATATTTT
TTTCAAAATAGAAAGCCTTTCTTTGACTCCAAACAATGAGAGAGGGTTTA
TTTTCGCAAACAAGCTTCTTTATGTATTAACGATTTTTATAGCTTTGACT
ACACTTTTTATCTACGGTTTTTTATAAAGTTTATGGTTTATGTATGGCCT
GTTCTATACGTCTAAATTTGCGACGAACAAAACGGTAATATCTCAAAATA
TCAGAATCCCGAGAAATATTTGTTTGATTACCGTTAGGTTAGATTTAAGG
GTAGAATCTCGTTATCGGCATAGAGTTCCAGTCCCGTTTTTCCgttatgt
tttcatgcaaatCCTAAATATATACTGTTCAAAAATGAGCCTGATCCTGT
GATCCTGTTACTTCAGATGCCCTCACCCTTGATTAAAAAGAGCATAATAA
ATATACATG
Run BLAST on NCBI

protein sequence of TCONS_00072729-protein

>TCONS_00072729-protein ID=TCONS_00072729-protein|Name=TCONS_00072729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MRECISIHIGQAGCQIGSSCWELYCLEHGISPDGTMKDSTNNSDSFTSFF
LETGAGKQVPRAVFVDLEPTVVDEIRAGPYRGLFHPDQMVTGKEDAANNY
ARGHYTIGREVIDPVLDRIRKLVDQCSGLQGFLLFHSFGGGTGSGFSALL
MERLSVEYGKKSKLQVTVYPAPRVSTAVVEPYNAVLTTHTTLEHSDCAFM
VDNEAIYDICRRNLDIDRPAYANLNRLISQVVSSITASLRFDGSLNVDLN
EFQTNLVPYPRIHFPMATYAPVVSAEKSFHESYSVQEITNSCFEPQMQLV
KCDPRHGKYMACCLLYRGDVVPKDVNAAISTLKTKRTIQFVDWCPTGFKI
GINYQPPTVVPGGDMAKVSRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRA
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEISIDAQAEEDEEDY
Run BLAST on NCBI

transcript from alignment at scaffold_82:266623..270560-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072729 ID=TCONS_00072729|Name=TCONS_00072729|organism=Clytia hemisphaerica|type=transcript|length=3938bp|location=Sequence derived from alignment at scaffold_82:266623..270560- (Clytia hemisphaerica)
CCCTCCTAGAAAATATTTCTGTTCATTTATGATTGGAGGGAGGTAGCATC
GACTGCTTTTCATATCCTAAAGATTTTCCAGTTTGCTTTTTAGTGTGTCG
TTACTCATAAAGAAAGCATCCAAAAATGGTAAGATTATTAATCTAGCCTG
GCTGACGACAAACCTCAAAATGTTTAAGATATTGAATTGGAATTCTGCTA
CTCTCGGGTACCTAGAAGCCAGGGGATGAAGAAAATCTCAAAACTTAATA
AGCGGGGAGATCGGAATAAAAATGTCCTAGGTGAAAATTTTTTGAAAAGG
AGGCTAATACAGCAGAATTAGGGCAAAAAAGGGAAATTTTAAAAACATAT
TCCCAAAAATTAATAAGCGGTGGGGTCGGAATAAGAATGTCCTGGGAAAT
TTTCGAAAAATCAATTAGCGCAGGGACGCTTATTAGGTACCCGAGAGTAA
GCCTTCTCGGTTTTTTTGTTCCGAAATTTCTCTCGTCTTTCGGTATCGAT
GGTGTAGAATGACTTTATTGATTAGGTAGCTCCCTTTTTGAGATAGATTT
TTGGGTTTGCCCGTACTTTAAGAGGTGAATTTCTCATAAATAAAAAACAG
ATGATAATAATTCGGAATGTCCCGTATTCTGAAACTTTTCGAACACCTTT
TTTCTAGAATCTAAATATATGTAGTGCCCTCTTTTTACGTCTTGCATGTT
AGCTCTTTTTTATTAATTCAATCTTCAGCTAGATAATTATGCTTTTGTAA
ATAGTCTCGAAGCAATCAATGGACTGTCTCGTTTATCTCAAAACAAGATT
GAAACGAATAGTATTTGAATTAATCGTCGACATTTTAGAAACAGACCTTT
CGAATTTATTTTTCAAGTGAGGCCAGAAATTCTTTCATGTGCCATGTCGA
GCAGAAAAATATTTCCTTTAAGGAACAAATATTCCCCCCTAATTATTTTA
GCGAGAGTGTATCTCAATTCATATTGGACAAGCTGGTTGTCAAATCGGTA
GCTCATGTTGGGAATTGTATTGTTTGGAGCATGGAATCTCACCTGATGGA
ACAATGAAGGATTCAACAAACAACAGTGATTCGTTCACTTCTTTCTTTCT
TGAGACTGGTGCTGGCAAACAAGTCCCCAGAGCTGTTTTTGTTGACTTGG
AACCTACTGTAGTTGGTAAGAGATGTTTTTGTTGACTTTGTTGCAGTTGG
TAAGATTATATTTTTCTACTACATGGGTAATAGTTTTATCATTTTATGAG
ACAATCCTATGAAGAATGCTAAGAAAAAGTTATTCTGCCAAAAGGAAAGA
ATATCCATCCAGATCATCTACCAAGTGCTCAAATGCATGTCTATATTTAG
ATATATTTTTGATGACCTCGCCAAAATAGTATACTTTACTTTAGCAAATT
TCTGCAGTTGCTTCTTTTTTCAGAAGTAGAACCTTGGATAATGAACTCAT
TTCTTTGCATCTCCCTTATTTTAGATGAGATTCGTGCAGGACCATATAGA
GGTCTTTTCCACCCAGATCAAATGGTAACTGGAAAAGAAGACGCAGCAAA
CAACTATGCACGAGGTCACTACACCATCGGTCGAGAAGTTATTGACCCAG
TCTTGGATAGAATCCGAAAGCTGGTCGATCAATGCAGTGGTTTACAAGGC
TTCTTATTATTCCATTCTTTTGGTGGAGGCACTGGTAGTGGGTTCTCAGC
TCTACTTATGGAGCGCCTTTCCGTAGAATATGGAAAGAAATCCAAGTTGC
AAGTCACTGTCTATCCAGCACCGCGAGTCTCCACAGCTGTTGTTGAACCA
TACAACGCTGTCTTGACTACACATACCACTTTGGAACACTCCGATTGTGC
TTTCATGGTTGATAACGAAGCCATTTATGATATCTGCCGACGAAACTTGG
ATATTGATCGGCCAGCTTATGCAAATCTGAATCGTTTGATCAGCCAAGTC
GTCTCCTCAATCACTGCATCTCTCAGGTTTGACGGCTCCTTGAATGTCGA
TTTGAATGAATTCCAAACCAACTTGGTTCCATACCCTAGAATCCATTTCC
CGATGGCTACATACGCTCCTGTGGTTTCTGCTGAGAAGTCTTTCCATGAA
AGTTACTCCGTTCAAGAAATCACTAATAGTTGCTTCGAACCACAAATGCA
ATTGGTCAAATGCGATCCAAGACACGGCAAATACATGGCATGCTGTTTAC
TTTACCGTGGCGATGTTGTGCCAAAAGACGTCAATGCAGCAATATCAACA
CTGAAAACTAAACGCACTATCCAATTTGTCGATTGGTGTCCAACCGGATT
CAAAATTGGAATCAATTACCAGCCGCCAACTGTTGTTCCTGGAGGAGATA
TGGCTAAAGTTTCCAGAGCTGTTTGCATGCTATCTAACACTACAGCCATT
GCTGAAGCATGGTCTAGATTGGATTACAAATTCGATTTGATGTACGCTAA
ACGTGCTTTTGTTCACTGGTATGTCGGAGAAGGTAAGAAAGAACATATTT
AATGTTTCACGTCGATTCTTGATCACTAAAAACTTTACTAAGCTCTACGC
ATATGTAGTGATACGTCATCTTCAATCGCAATAAAAACTTACTTCCTCAT
CGCATGGGTAGAATTACTCTTGGGTATCTAATAAGCGTCCCACCCGCTAA
TTAATTTTTTGAAAATGTTTTTTAAAGTTCTCTCTTTTGCCCTAATTCTG
CTGTATTAGCCTCCTTTTCAAAAATTTACCAACCATGAAATTTCTATTCC
AACTTCCACATCCAGCTATTAGGTACCCAAGCGTACTTTAAAACTTCTCT
ATTCTAACGAATACGCTTTTTTATATAATTCATCCAGCAAACTACGAAAT
GACCGTTACTAACTGTGAGGGTTTGTTTGTCTCTACAATCTAGAGGACTG
TAATTTGTTATGTTTGAACCCTACTATATTCTAAAGATAGCAGCCTCGAA
AGGGGTCTTGCTTAACCAACTCTATAACAACCAGTCTCGATTATTTACAC
TTCCAAACACCATATGTTGAACGGTGAAAAAGAATACGGCTAATACATTT
TTCGGACTCAGTCTATTTGATAATTTACAGGAGGTTTTGTAAAACCTATC
ACTTTCATTAGAATGCGATACAGAGTTGCTTCAATGATTTTATCATTACC
TTCCTCTGATGTCTGAATTTCATTTCTAGGTATGGAAGAAGGTGAGTTTT
CGGAGGCTCGTGAAGATTTAGCTGCTCTTGAGAAAGATTACGAAGAAATA
AGTATTGATGCACAAGCAGAAGAAGATGAAGAAGATTATTAAAGAACATT
TTGAATTTTTTTTTTTTTGCGTATTGGTAACGATTGGAAGATATTTAACG
AAATGTTTTTATCTAACGGCGCAACTATTTTGCGAGGAAGAGGAAGAAAA
TTTCTCATCTCCAACTCATTTGGGCCAATTGGTTTGGTAAACTTAAAACG
TCATAATACACCTACACATTTTATAAAAATTATGCTGGTAGAGACCTTCT
TATATATAAAAGTCCTTCAGAAATATTTTTTTCAAAATAGAAAGCCTTTC
TTTGACTCCAAACAATGAGAGAGGGTTTATTTTCGCAAACAAGCTTCTTT
ATGTATTAACGATTTTTATAGCTTTGACTACACTTTTTATCTACGGTTTT
TTATAAAGTTTATGGTTTATGTATGGCCTGTTCTATACGTCTAAATTTGC
GACGAACAAAACGGTAATATCTCAAAATATCAGAATCCCGAGAAATATTT
GTTTGATTACCGTTAGGTTAGATTTAAGGGTAGAATCTCGTTATCGGCAT
AGAGTTCCAGTCCCGTTTTTCCGTTATGTTTTCATGCAAATCCTAAATAT
ATACTGTTCAAAAATGAGCCTGATCCTGTGATCCTGTTACTTCAGATGCC
CTCACCCTTGATTAAAAAGAGCATAATAAATATACATG

Coding sequence (CDS) from alignment at scaffold_82:266623..270560-

>TCONS_00072729 ID=TCONS_00072729|Name=TCONS_00072729|organism=Clytia hemisphaerica|type=CDS|length=5352bp|location=Sequence derived from alignment at scaffold_82:266623..270560- (Clytia hemisphaerica)
GTATGGAAGAAGGTGAGTTTTCGGAGGCTCGTGAAGATTTAGCTGCTCTT
GAGAAAGATTACGAAGAAATAAGTATTGATGCACAAGCAGAAGAAGATGA
AGAAGATTATTAAATGAGATTCGTGCAGGACCATATAGAGGTCTTTTCCA
CCCAGATCAAATGGTAACTGGAAAAGAAGACGCAGCAAACAACTATGCAC
GAGGTCACTACACCATCGGTCGAGAAGTTATTGACCCAGTCTTGGATAGA
ATCCGAAAGCTGGTCGATCAATGCAGTGGTTTACAAGGCTTCTTATTATT
CCATTCTTTTGGTGGAGGCACTGGTAGTGGGTTCTCAGCTCTACTTATGG
AGCGCCTTTCCGTAGAATATGGAAAGAAATCCAAGTTGCAAGTCACTGTC
TATCCAGCACCGCGAGTCTCCACAGCTGTTGTTGAACCATACAACGCTGT
CTTGACTACACATACCACTTTGGAACACTCCGATTGTGCTTTCATGGTTG
ATAACGAAGCCATTTATGATATCTGCCGACGAAACTTGGATATTGATCGG
CCAGCTTATGCAAATCTGAATCGTTTGATCAGCCAAGTCGTCTCCTCAAT
CACTGCATCTCTCAGGTTTGACGGCTCCTTGAATGTCGATTTGAATGAAT
TCCAAACCAACTTGGTTCCATACCCTAGAATCCATTTCCCGATGGCTACA
TACGCTCCTGTGGTTTCTGCTGAGAAGTCTTTCCATGAAAGTTACTCCGT
TCAAGAAATCACTAATAGTTGCTTCGAACCACAAATGCAATTGGTCAAAT
GCGATCCAAGACACGGCAAATACATGGCATGCTGTTTACTTTACCGTGGC
GATGTTGTGCCAAAAGACGTCAATGCAGCAATATCAACACTGAAAACTAA
ACGCACTATCCAATTTGTCGATTGGTGTCCAACCGGATTCAAAATTGGAA
TCAATTACCAGCCGCCAACTGTTGTTCCTGGAGGAGATATGGCTAAAGTT
TCCAGAGCTGTTTGCATGCTATCTAACACTACAGCCATTGCTGAAGCATG
GTCTAGATTGGATTACAAATTCGATTTGATGTACGCTAAACGTGCTTTTG
TTCACTGGTATGTCGGAGAAGCGAGAGTGTATCTCAATTCATATTGGACA
AGCTGGTTGTCAAATCGGTAGCTCATGTTGGGAATTGTATTGTTTGGAGC
ATGGAATCTCACCTGATGGAACAATGAAGGATTCAACAAACAACAGTGAT
TCGTTCACTTCTTTCTTTCTTGAGACTGGTGCTGGCAAACAAGTCCCCAG
AGCTGTTTTTGTTGACTTGGAACCTACTGTAGTTGATGGTATGGAAGAAG
GTGAGTTTTCGGAGGCTCGTGAAGATTTAGCTGCTCTTGAGAAAGATTAC
GAAGAAATAAGTATTGATGCACAAGCAGAAGAAGATGAAGAAGATTATTA
AATGAGATTCGTGCAGGACCATATAGAGGTCTTTTCCACCCAGATCAAAT
GGTAACTGGAAAAGAAGACGCAGCAAACAACTATGCACGAGGTCACTACA
CCATCGGTCGAGAAGTTATTGACCCAGTCTTGGATAGAATCCGAAAGCTG
GTCGATCAATGCAGTGGTTTACAAGGCTTCTTATTATTCCATTCTTTTGG
TGGAGGCACTGGTAGTGGGTTCTCAGCTCTACTTATGGAGCGCCTTTCCG
TAGAATATGGAAAGAAATCCAAGTTGCAAGTCACTGTCTATCCAGCACCG
CGAGTCTCCACAGCTGTTGTTGAACCATACAACGCTGTCTTGACTACACA
TACCACTTTGGAACACTCCGATTGTGCTTTCATGGTTGATAACGAAGCCA
TTTATGATATCTGCCGACGAAACTTGGATATTGATCGGCCAGCTTATGCA
AATCTGAATCGTTTGATCAGCCAAGTCGTCTCCTCAATCACTGCATCTCT
CAGGTTTGACGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACCAACT
TGGTTCCATACCCTAGAATCCATTTCCCGATGGCTACATACGCTCCTGTG
GTTTCTGCTGAGAAGTCTTTCCATGAAAGTTACTCCGTTCAAGAAATCAC
TAATAGTTGCTTCGAACCACAAATGCAATTGGTCAAATGCGATCCAAGAC
ACGGCAAATACATGGCATGCTGTTTACTTTACCGTGGCGATGTTGTGCCA
AAAGACGTCAATGCAGCAATATCAACACTGAAAACTAAACGCACTATCCA
ATTTGTCGATTGGTGTCCAACCGGATTCAAAATTGGAATCAATTACCAGC
CGCCAACTGTTGTTCCTGGAGGAGATATGGCTAAAGTTTCCAGAGCTGTT
TGCATGCTATCTAACACTACAGCCATTGCTGAAGCATGGTCTAGATTGGA
TTACAAATTCGATTTGATGTACGCTAAACGTGCTTTTGTTCACTGGTATG
TCGGAGAAGCGAGAGTGTATCTCAATTCATATTGGACAAGCTGGTTGTCA
AATCGGTAGCTCATGTTGGGAATTGTATTGTTTGGAGCATGGAATCTCAC
CTGATGGAACAATGAAGGATTCAACAAACAACAGTGATTCGTTCACTTCT
TTCTTTCTTGAGACTGGTGCTGGCAAACAAGTCCCCAGAGCTGTTTTTGT
TGACTTGGAACCTACTGTAGTTGATGGTATGGAAGAAGGTGAGTTTTCGG
AGGCTCGTGAAGATTTAGCTGCTCTTGAGAAAGATTACGAAGAAATAAGT
ATTGATGCACAAGCAGAAGAAGATGAAGAAGATTATTAAATGAGATTCGT
GCAGGACCATATAGAGGTCTTTTCCACCCAGATCAAATGGTAACTGGAAA
AGAAGACGCAGCAAACAACTATGCACGAGGTCACTACACCATCGGTCGAG
AAGTTATTGACCCAGTCTTGGATAGAATCCGAAAGCTGGTCGATCAATGC
AGTGGTTTACAAGGCTTCTTATTATTCCATTCTTTTGGTGGAGGCACTGG
TAGTGGGTTCTCAGCTCTACTTATGGAGCGCCTTTCCGTAGAATATGGAA
AGAAATCCAAGTTGCAAGTCACTGTCTATCCAGCACCGCGAGTCTCCACA
GCTGTTGTTGAACCATACAACGCTGTCTTGACTACACATACCACTTTGGA
ACACTCCGATTGTGCTTTCATGGTTGATAACGAAGCCATTTATGATATCT
GCCGACGAAACTTGGATATTGATCGGCCAGCTTATGCAAATCTGAATCGT
TTGATCAGCCAAGTCGTCTCCTCAATCACTGCATCTCTCAGGTTTGACGG
CTCCTTGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTCCATACC
CTAGAATCCATTTCCCGATGGCTACATACGCTCCTGTGGTTTCTGCTGAG
AAGTCTTTCCATGAAAGTTACTCCGTTCAAGAAATCACTAATAGTTGCTT
CGAACCACAAATGCAATTGGTCAAATGCGATCCAAGACACGGCAAATACA
TGGCATGCTGTTTACTTTACCGTGGCGATGTTGTGCCAAAAGACGTCAAT
GCAGCAATATCAACACTGAAAACTAAACGCACTATCCAATTTGTCGATTG
GTGTCCAACCGGATTCAAAATTGGAATCAATTACCAGCCGCCAACTGTTG
TTCCTGGAGGAGATATGGCTAAAGTTTCCAGAGCTGTTTGCATGCTATCT
AACACTACAGCCATTGCTGAAGCATGGTCTAGATTGGATTACAAATTCGA
TTTGATGTACGCTAAACGTGCTTTTGTTCACTGGTATGTCGGAGAAGCGA
GAGTGTATCTCAATTCATATTGGACAAGCTGGTTGTCAAATCGGTAGCTC
ATGTTGGGAATTGTATTGTTTGGAGCATGGAATCTCACCTGATGGAACAA
TGAAGGATTCAACAAACAACAGTGATTCGTTCACTTCTTTCTTTCTTGAG
ACTGGTGCTGGCAAACAAGTCCCCAGAGCTGTTTTTGTTGACTTGGAACC
TACTGTAGTTGATGGTATGGAAGAAGGTGAGTTTTCGGAGGCTCGTGAAG
ATTTAGCTGCTCTTGAGAAAGATTACGAAGAAATAAGTATTGATGCACAA
GCAGAAGAAGATGAAGAAGATTATTAAATGAGATTCGTGCAGGACCATAT
AGAGGTCTTTTCCACCCAGATCAAATGGTAACTGGAAAAGAAGACGCAGC
AAACAACTATGCACGAGGTCACTACACCATCGGTCGAGAAGTTATTGACC
CAGTCTTGGATAGAATCCGAAAGCTGGTCGATCAATGCAGTGGTTTACAA
GGCTTCTTATTATTCCATTCTTTTGGTGGAGGCACTGGTAGTGGGTTCTC
AGCTCTACTTATGGAGCGCCTTTCCGTAGAATATGGAAAGAAATCCAAGT
TGCAAGTCACTGTCTATCCAGCACCGCGAGTCTCCACAGCTGTTGTTGAA
CCATACAACGCTGTCTTGACTACACATACCACTTTGGAACACTCCGATTG
TGCTTTCATGGTTGATAACGAAGCCATTTATGATATCTGCCGACGAAACT
TGGATATTGATCGGCCAGCTTATGCAAATCTGAATCGTTTGATCAGCCAA
GTCGTCTCCTCAATCACTGCATCTCTCAGGTTTGACGGCTCCTTGAATGT
CGATTTGAATGAATTCCAAACCAACTTGGTTCCATACCCTAGAATCCATT
TCCCGATGGCTACATACGCTCCTGTGGTTTCTGCTGAGAAGTCTTTCCAT
GAAAGTTACTCCGTTCAAGAAATCACTAATAGTTGCTTCGAACCACAAAT
GCAATTGGTCAAATGCGATCCAAGACACGGCAAATACATGGCATGCTGTT
TACTTTACCGTGGCGATGTTGTGCCAAAAGACGTCAATGCAGCAATATCA
ACACTGAAAACTAAACGCACTATCCAATTTGTCGATTGGTGTCCAACCGG
ATTCAAAATTGGAATCAATTACCAGCCGCCAACTGTTGTTCCTGGAGGAG
ATATGGCTAAAGTTTCCAGAGCTGTTTGCATGCTATCTAACACTACAGCC
ATTGCTGAAGCATGGTCTAGATTGGATTACAAATTCGATTTGATGTACGC
TAAACGTGCTTTTGTTCACTGGTATGTCGGAGAAGCGAGAGTGTATCTCA
ATTCATATTGGACAAGCTGGTTGTCAAATCGGTAGCTCATGTTGGGAATT
GTATTGTTTGGAGCATGGAATCTCACCTGATGGAACAATGAAGGATTCAA
CAAACAACAGTGATTCGTTCACTTCTTTCTTTCTTGAGACTGGTGCTGGC
AAACAAGTCCCCAGAGCTGTTTTTGTTGACTTGGAACCTACTGTAGTTGA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045140XLOC_045140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072729-exon-scaffold_82-1575043694:270433..270560TCONS_00072729-exon-scaffold_82-1575043694:270433..270560Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1575043694:269396..269609TCONS_00072729-exon-scaffold_82-1575043694:269396..269609Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1575043694:268079..269086TCONS_00072729-exon-scaffold_82-1575043694:268079..269086Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1575043694:266623..267381TCONS_00072729-exon-scaffold_82-1575043694:266623..267381Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1510915933:270433..270560TCONS_00072729-exon-scaffold_82-1510915933:270433..270560Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1510915933:269396..269609TCONS_00072729-exon-scaffold_82-1510915933:269396..269609Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1510915933:268079..269086TCONS_00072729-exon-scaffold_82-1510915933:268079..269086Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1510915933:266623..267381TCONS_00072729-exon-scaffold_82-1510915933:266623..267381Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1491911889:270433..270560TCONS_00072729-exon-scaffold_82-1491911889:270433..270560Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1491911889:269396..269609TCONS_00072729-exon-scaffold_82-1491911889:269396..269609Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1491911889:268079..269086TCONS_00072729-exon-scaffold_82-1491911889:268079..269086Clytia hemisphaericaexon
TCONS_00072729-exon-scaffold_82-1491911889:266623..267381TCONS_00072729-exon-scaffold_82-1491911889:266623..267381Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072729-proteinTCONS_00072729-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:266623..270560 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.077998	0.113968	0.238962	0.150438	0.0755478	0.0795993	0.0751852	0.0899051	0.875444	0.451157	1.10755	0.956517	4.57739	4.95865	7.84043	6.52547	3.53414	3.90189	2.08717	2.02242	5.05501	5.49966	43.9051	61.7641	465.001	356.18	1.64867	2.112	13.3517	9.28909
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
[Close]
BLAST of TCONS_00072729 vs. Swiss-Prot (Human)
Match: TBA4A (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 364/432 (84.26%), Postives = 404/432 (93.52%), Query Frame = 3 
Query:  126 MRECISIHIGQAGCQIGSSCWELYCLEHGISPDGTM---KXXXXXXXXXXXXXLETGAGKQVPRAVFVDLEPTVVDEIRAGPYRGLFHPDQMVTGKEDAANNYARGHYTIGREVIDPVLDRIRKLVDQCXXXXXXXXXXXXXXXXXXXXXXXXMERLSVEYGKKSKLQVTVYPAPRVSTAVVEPYNAVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIDRPAYANLNRLISQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPMATYAPVVSAEKSFHESYSVQEITNSCFEPQMQLVKCDPRHGKYMACCLLYRGDVVPKDVNAAISTLKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDMAKVSRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 1412
            MRECIS+H+GQAG Q+G++CWELYCLEHGI PDG M   K      DSFT+FF ETGAGK VPRAVFVDLEPTV+DEIR GPYR LFHP+Q++TGKEDAANNYARGHYTIG+E+IDPVLDRIRKL DQC+GLQGFL+FHSFGGGTGSGF++LLMERLSV+YGKKSKL+ ++YPAP+VSTAVVEPYN++LTTHTTLEHSDCAFMVDNEAIYDICRRNLDI+RP Y NLNRLISQ+VSSITASLRFDG+LNVDL EFQTNLVPYPRIHFP+ATYAPV+SAEK++HE  SV EITN+CFEP  Q+VKCDPRHGKYMACCLLYRGDVVPKDVNAAI+ +KTKR+IQFVDWCPTGFK+GINYQPPTVVPGGD+AKV RAVCMLSNTTAIAEAW+RLD+KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of TCONS_00072729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA4A0.000e+084.26Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
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