TCONS_00072358-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072358-protein
Unique Name	TCONS_00072358-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	590

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072358-protein ID=TCONS_00072358-protein|Name=TCONS_00072358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp
MASGINFVETVEKFLSAIRSIANDDCDKVIEETWNDCTGGDADKKSALDQ
AFRQFIAGKITDSCVVVGHQNEDGTDMEIVKNGDTSSEKITLFQNSLNMI
ILHAQQNKCTSYLPITLMSDIFDALTLTECEKLFNFVEDNVKIWTAEPFF
KLGKNHLLRMCNDILRRLSKSLNTIFCGRIQLFLACLFPVEEKSALNIMS
QFHTENLTVYKKNKEEFNMEALLDDNDTDIPEVASPIDFNLYYRFWFLQD
FFRQPNQCFKPEGWKKFKNYVTEILNVFENYKIEYNEKKRSKGGSNAVDD
VTFADIMSTSGNADYFPKYLTNEKLLDLQINDSNFRRYFLVQILILCQYL
TGEVKFKTQANYKLLEKQSLWVHELVDRVYGIINDTPPKGKKFANVVRHV
LTREENWISWKNEGCQSFAKAEQKLTAPKPQVREVMRGKRMVKTRGAKRS
VGDEFLNNTKKKINLGTPELTKLWNLCPDNMEACKAESRLKFLPQLEPFF
EEAVEQADPEAGIEDEYKIVNKPNFQWKALRLLARRSHHFFTPSTTPFKA
LPAYLTSVIEQLGKEFNKTAQNAVSLNETAETTVKQELTV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044931	XLOC_044931	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072358	TCONS_00072358	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021861	THO_THOC1

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021861	THO complex, subunit THOC1	PFAM	PF11957	efThoc1	coord: 95..572 e-value: 9.5E-121 score: 403.7

Blast

[Close]

BLAST of TCONS_00072358-protein vs. Swiss-Prot (Human)
Match: THOC1 (THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1)

HSP 1 Score: 468.389 bits (1204), Expect = 1.729e-158
Identity = 251/573 (43.80%), Postives = 346/573 (60.38%), Query Frame = 0

Query:    9 ETVEKFLSAIRSIANDDCDKVIEETWNDCTGGDADKKSALDQAFRQFIAGKITDSCVVVGHQNEDGTDMEIVKNGDTSSEKITLFQNSLNMIILHAQQNKCTSYLPITLMSDIFDALTLTECEKLFNFVEDNVKIWTAEPFFKLGKNHLLRMCNDILRRLSKSLNTIFCGRIQLFLACLFPVEEKSALNIMSQFHTENLTVYKKNKEEFNM--------EALLD-----DNDTDIPEVAS-PIDFNLYYRFWFLQDFFRQPNQCFKPEGWKKFKNYVTEILNVFENYKIEYNEKKRSKGGSNAVDDVTFADIMSTSGNADYFPKYLTNEKLLDLQINDSNFRRYFLVQILILCQYLTGEVKFKTQANYKLLEKQSLWVHELVDRVYGIINDTPPKGKKFANVVRHVLTREENWISWKNEGCQSFAKAEQKLTAPKPQVREVMRGKRMVKTRGAKRSVGDEFLN-NTKKKINLGTPELTKLWNLCPDNMEACKAESRLKFLPQLEPFFEEAVEQADPEAGIEDEYKIVNKPNFQWKALRLLARRSHHFFTPSTTPFKALPAYLTSVIEQLGKEF 566
            E   +F  + R   N+   K +  T++   G + +KK  LDQAFR  +  +I      + H               +S E +      +++ I    +  CT+  P  L+ D+ D L L +C+ +F FVE NV  W +  F+  GKN+LLRMCND+LRRLSKS NT+FCGRIQLFLA LFP+ EKS LN+ SQF+ EN+TV+  N++E  +        E  +D       D + P   S PID+NLY +FW LQD+FR P QC++   WK F  Y  E+L VF++YK++  +  R K            + + T G   YF K+LT+EKL+DLQ++DSNFRR+ L+Q LIL QYL G+VKFK+ +NY L ++QSLW+ +    VY ++++ PP G++F+ +V H+L  EENW SWKNEGC SF K     T P   +R              KR+  ++FL     KKI +G  ELT+LWNLCPDNMEACK+E+R + +P LE FFEEA+EQADPE  +E+EYK VN  N+ W+ALRLLARRS HFF P+   FK+LP YL +++ +L KE 
Sbjct:   12 EARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILEEEI------INH---------------SSCENVLAI---ISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKK-----------MEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKS-SNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIR--------------KRTAPEDFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSETR-EHMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKEL 533

The following BLAST results are available for this feature:

BLAST of TCONS_00072358-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072358-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
THOC1	1.729e-158	43.80	THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=...	[more]

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TCONS_00072358-protein (polypeptide) - C. hemisphaerica