TCONS_00071179-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071179-protein
Unique NameTCONS_00071179-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071179-protein ID=TCONS_00071179-protein|Name=TCONS_00071179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp
MSFTRSKSSIAMSMKRSVIYLFQNDLRLHDNECLKIAQSKGNFLIPLYCF
QPNHFKGTYSFNLPRSGTHRTKFLIESITDLRANLQKLGSNLVVRNESPL
SAIKDLVKLCQNSEAPVSSIIYQKEVTSEEIDLEKQIKSFCKEQSIEDYP
VWGLSLFHKDDIPYNKKTIPDTYSKFRQGVESKSEIRDLIPTPLTLNKLP
PIKGASLGDIPTMEKLIGVQSYMQDNRTAVPLEGGESAGLKHLQKYLWDT
DAISTYKETRNGLLGEEYSTKFSIWLANGSLSPRQIYHEVKRYENQRVSN
QSTYWSIFELIWRDYFKFVCWKYGRKVFYLSGIMGKHLPWKQDKIAFQKW
CQGETGVPFVDANMRELLHTGWMSNRGRQNVASFLVKDLKLDWRLGAEWF
ESQLLDHDVCSNYGNWNYSAGIGNDPRQDRKFNMIKQALDYDAEGKFVKT
WVPELTNLPANKVHVPWTIPDRELQRLEFSLGQDYPKPMVMAPEWGRHTH
KTNGKAFQKNAEKPQRGIDFYFKSPDAGPSGQGSAGGKKNQRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044238XLOC_044238Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071179TCONS_00071179Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002081Cryptochrome/DNA_photolyase_1
IPR014133Cry_DASH
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
IPR005101Cryptochr/Photolyase_FAD-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003913DNA photolyase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003913 DNA photolyase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002081Cryptochrome/DNA photolyase class 1PRINTSPR00147DNAPHOTLYASEcoord: 355..371
score: 61.76
coord: 375..393
score: 63.82
coord: 414..428
score: 38.33
IPR014133Cryptochrome DASHTIGRFAMTIGR02765TIGR02765coord: 17..455
e-value: 4.8E-176
score: 583.8
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 18..188
e-value: 7.5E-32
score: 110.5
IPR006050DNA photolyase, N-terminalPROSITEPS51645PHR_CRY_ALPHA_BETAcoord: 16..156
score: 30.145
IPR006050DNA photolyase, N-terminalSUPERFAMILY52425Cryptochrome/photolyase, N-terminal domaincoord: 16..202
NoneNo IPR availableGENE3D1.25.40.80coord: 154..325
e-value: 2.4E-45
score: 154.2
NoneNo IPR availableGENE3D1.10.579.10coord: 326..502
e-value: 6.0E-65
score: 217.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 500..543
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 11..153
e-value: 1.7E-29
score: 101.9
IPR005101Cryptochrome/DNA photolyase, FAD-binding domainPFAMPF03441FAD_binding_7coord: 308..492
e-value: 9.4E-62
score: 208.0
IPR005101Cryptochrome/DNA photolyase, FAD-binding domainSUPERFAMILY48173Cryptochrome/photolyase FAD-binding domaincoord: 229..490

Blast
[Close]
BLAST of TCONS_00071179-protein vs. Swiss-Prot (Human)
Match: CRY1 (Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.574e-42
Identity = 146/537 (27.19%), Postives = 237/537 (44.13%), Query Frame = 0 
Query:   14 MKRSVIYLFQNDLRLHDNECLKIAQSKGNFLIPLYCFQPNHFKGTYSFNLPRSGTHRTKFLIESITDLRANLQKLGSNLVVRNESPLSAIKDLVKLCQNSEAPVSSIIYQKEVTSEEIDLEKQIKSFCKEQSIEDYPVWGLSLFHKDDI-PYNKKTIPDTYSKFRQGVESKSEIRDLIPTPLTLNKLPPIKGASLGD-------IPTMEKLIGVQSYMQDNRTAVPLEGGESAGLKHLQKYLWDTDAISTYKETR---NGLLGEEYSTKFSIWLANGSLSPRQIYHEVKRYENQRVSNQSTYWSIF-ELIWRDYFKFVCWKYGRKVFYLSGIMGKHLPWKQDKIAFQKWCQGETGVPFVDANMRELLHTGWMSNRGRQNVASFLVK-DLKLDWRLGAEWFESQLLDHDVCSNYGNWNYSAGIGNDPRQDRKFNMIKQALDYDAEGKFVKTWVPELTNLPANKVHVPWTIPDRELQRLEFSLGQDYPKPMVMAPEWGRHTHKTNGKAFQKNAEKPQRGIDFYFKSPDAGPSGQGSAGG 537
            M  + ++ F+  LRLHDN  LK      + +  +Y   P  F G+ +      G +R +FL++ + DL ANL+KL S L V    P      L K    ++    SI Y  E   +E D    IK    E  +E       +L+  D I   N    P TY +F Q + SK E  + IP     +++       L D       +P++E+L     +  D  ++    GGE+  L  L+++L     ++ ++  R   N LL     T  S +L  G LS R  Y ++     +   N S   S++ +L+WR++F        R        +   +PW ++  A  KW +G TG P++DA M +L   GW+ +  R  VA FL + DL + W  G + FE  LLD D   N G+W + +      +    +  +      D  G +++ ++P L   PA  ++ PW  P+   +  +  +G +YPKPMV   E  R   +   + +Q+ +    RG+      P + P+G G   G
Sbjct:    1 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP-WFAGSSNV-----GINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL---SIEYDSEPFGKERD--AAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF-QTLISKMEPLE-IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL----GFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSR--YRGLGLLASVP-SNPNGNGGFMG 515
The following BLAST results are available for this feature:
BLAST of TCONS_00071179-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRY12.574e-4227.19Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1[more]
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