TCONS_00071179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071179
Unique NameTCONS_00071179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071179 ID=TCONS_00071179|Name=TCONS_00071179|organism=Clytia hemisphaerica|type=transcript|length=2617bp
ggaAAGAAAACTGAAGAAAAGACTGTGACAGCACACTCACACTCTAAatt
ttgacaaacttttttctgaaaaacaaACTCAAGACTTGCAATTTCCATGA
ACGTCCTCTGGATAAACTGATAAAGTTATTAAATTTATTATAAAGGTTTT
AAAAGAGAAGAGCAGAAGAAGGagttatatttttaaagaactcttttATG
TCTTTTACAAGATCAAAAAGTTCAATAGCCATGTCCATGAAACGATCTGT
CATTTATTTGTTCCAAAACGATTTACGACTTCATGACAATGAATGCTTAA
AGATTGCTCAAAGTAAAGGGAATTTCTTGATTCCCTTATATTGTTTCCAG
CCCAACCATTTCAAGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTAC
ACACAGAACAAAATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATC
TACAAAAACTTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCA
GCCATCAAAGACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTC
CTCCATCATTTATCAAAAAGAAGTGACTTCAGAAGAGattgatttagaaa
aacaaatcaaatcttTCTGCAAAGAACAAAGCATTGAAGACTACCCTGTT
TGGGGTTTGTCATTGTTTCACAAAGATGACATTCCATACAATAAGAAGAC
CATCCCAGATACATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCG
AAATTCGTGATTTAATTCCTACACCACTAACCCTTAATAAACTGCCACCT
ATCAAAGGTGCCAGTCTTGGTGATATCCCTACAATGGAGAAGTTGATCGG
TGTTCAAAGCTATATGCAAGATAACAGAACAGCTGTTCCACTAGAAGGTG
GTGAAAGTGCTGGCTTGAAACATCTCCAAAAATATCTTTGGGACACTGAT
GCCATTTCAACTTACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAATA
CTCGACCAAGTTTAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAGAC
AGATCTACCATGAAGTCAAGAGATATGAAAATCAACGTGTATCCAACCAA
TCCACTTACTGGAGTATCTTTGAACTGATCTGGAGAGATTACTTTAAATT
TGTATGTTGGAAATATGGGAGAAAAGTGTTCTATTTATCTGGCATCATGG
GCAAACATTTACCTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGTGT
CAAGGTGAGACAGGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTACT
TCATACAGGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCT
TGGTCAAGGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAA
TCACAACTTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTA
TTCAGCTGGCATTGGTAATGATCCAAGACAAGACCGTAAATTCAATATGA
TCAAACAAGCTCTTGATTATGATGCTGAAGGAAAATTTGTGAAAACTTGG
GTTCCAGAGCTTACCAATCTTCCTGCTAACAAGGTCCATGTACCTTGGAC
TATTCCTGACCGGGAGCTACAAAGATTGGAGTTCTCATTAGGGCAGGACT
ACCCAAAGCCTATGGTAATGGCACCTGAGTGGGGCCGACATACACATAAA
ACGAACGGTAAAGCATTTCAAAAGAATGCAGAAAAGCCTCAAAGAGGgat
tgatttttattttaaatcacCAGATGCTGGCCCAAGTGGTCAGGGTTCTG
CTGGAGGAAAGAAAAACCAAAGGCGTTAAAATAATCAAATCTATGACGAC
GTACCGTtgaaatttttaagattggaAATCAAAATCTTTAGTGTGTTCTT
GGTATTTTGTGATATCTGACAGGTCAGATTTACCCTTACTACTATTGCTC
AGTGCTGCGTTGTATAGTAaagtgaaaatataaaatacagTATGCAAGCT
AACTTGTTTTGAACGGTTGATACCACacatttataaagcccgaagggcta
gatgtcgtgctttaagctcttccaagcaaaaaaaagtgaatatcgcaaaa
agtATTGCTGCTGTTGTTCtcgaaaacctgcgaagctttTTATTgttcaa
gcgctgaaattctattatatcacgtgacctaggtaggatttcccaTCTAa
actcggcacacttttcagccgaagcacgacatctagccattcgggctttT
TAAATCTATGGTTGATACTACTATGaatattatttgaatgcatacGAGGG
TATACGAAAATGGAATTTGTATTGTGTATTACATATAATGATTCAAGGAT
ATGGGAGGATAGTATTTgtatcaaaactaaaaaaaaacaattttagagag
tatttttagatacttttatttattttgatataacGTTTTATATAGATTGT
GTTTTCATataatgaaaatttattttagccAATGTCTTTGTTACTATAAC
TTGTCTTGACTACCATTATATACTTCAATTACTCATGTACTTTCCTATCC
TACCAGTTTTGAACTAGAATCAGAAGCAATAGAAAATTCAGTTGATCTGC
CTGATACTATTCTCTCA
Run BLAST on NCBI

protein sequence of TCONS_00071179-protein

>TCONS_00071179-protein ID=TCONS_00071179-protein|Name=TCONS_00071179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp
MSFTRSKSSIAMSMKRSVIYLFQNDLRLHDNECLKIAQSKGNFLIPLYCF
QPNHFKGTYSFNLPRSGTHRTKFLIESITDLRANLQKLGSNLVVRNESPL
SAIKDLVKLCQNSEAPVSSIIYQKEVTSEEIDLEKQIKSFCKEQSIEDYP
VWGLSLFHKDDIPYNKKTIPDTYSKFRQGVESKSEIRDLIPTPLTLNKLP
PIKGASLGDIPTMEKLIGVQSYMQDNRTAVPLEGGESAGLKHLQKYLWDT
DAISTYKETRNGLLGEEYSTKFSIWLANGSLSPRQIYHEVKRYENQRVSN
QSTYWSIFELIWRDYFKFVCWKYGRKVFYLSGIMGKHLPWKQDKIAFQKW
CQGETGVPFVDANMRELLHTGWMSNRGRQNVASFLVKDLKLDWRLGAEWF
ESQLLDHDVCSNYGNWNYSAGIGNDPRQDRKFNMIKQALDYDAEGKFVKT
WVPELTNLPANKVHVPWTIPDRELQRLEFSLGQDYPKPMVMAPEWGRHTH
KTNGKAFQKNAEKPQRGIDFYFKSPDAGPSGQGSAGGKKNQRR
Run BLAST on NCBI

transcript from alignment at scaffold_6:240540..250936-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071179 ID=TCONS_00071179|Name=TCONS_00071179|organism=Clytia hemisphaerica|type=transcript|length=10397bp|location=Sequence derived from alignment at scaffold_6:240540..250936- (Clytia hemisphaerica)
GGAAAGAAAACTGAAGAAAAGACTGTGACAGCACACTCACACTCTAAATT
TTGACAAACTTTTTTCTGAAAAACAAACTCAAGACTTGCAATTTCCATGA
ACGTCCTCTGGATAAACTGATAAAGTTATTAAATTTATTATAAAGGTTTT
AAAAGAGAAGAGCAGAAGAAGGAGTTATATTTTTAAAGAACTCTTTTATG
TCTTTTACAAGATCAAAAAGTTCAAGTAAGTAGGGAGATGTTTTGTTTTT
TATTTTATTTAGCTAAGTATGGGAATTTTCAAAATGCTTGCAACGTTACA
AATCATTTTCAGAAGCTCATTTTGGTTTGGGCTCAAACGAAGCGTATACC
GTTGTGAGAGTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCGC
CCTCAGATGAAAGATCTGGCTGGTCATTAAAATACAACTACGCAGCTCCG
CTCGCAGCTCTACTCTACCATTTTTGTTTTGATTTAACTTTGTACAGTCA
GGCACATCCTGGCAAATGAACAGGGTATTTTTCATTTGCGATTGGTGGCA
AATGCAAGGGGTCGAAAACAAAAGTGATGTAATAGCACTGAATACCCCAC
GCAATTGAACTGGGTTGGAAATATTTTGCTTCATTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCTTTCATTTGAGGGCTATGCATGTTAGCCATTAGCCTGC
CTCCACTGATGCAAGTTACCCAATCTCACGGTATATAACTAAGAGTAAGA
TTCAGTCTAGGCCAGATGTCTTTTTTATATTTTGATATTTTGCGTAATTC
ATAAAAATCCTCAATTTTGTGCTACGTGGGATGATTGGTCTGTTAAATCT
CTTTGACAACAAATTTATCAATCAGTAGCTTCCACAGAGTGCAGATGTCT
TGAATTTGGGACTTTGGATGTCAATATACCAGAATATACCGTGAAGTCGG
GTAACTTGCATCAGTGGAGGGAAACTTGCATAGCCATCAAATGACTGACC
AATCAAAAGCAGCAAAATTTCAAAACAAATGAACTGCGCAGCTTCACTCG
CAGCTCTACTCTACCATGCCATTTTTGTTTCGATTTAATTTTGTATTTTA
ATGACCAGCCCGGGTCATTCATTTGAGGGGTATGCATGTTATGTTAGCCT
CCACTGATGCAAGTTACCCGATCTCACGGTATATCTTGGGATAGAATTAC
CGTTGACAACTTTGACTTGAATTTTCCAAATGATTTTCATGATAGCTATG
CCCTGACAAAGTTTCATTTTTTGTGCCGAAATCCCTTTAAATCACAATTT
TTTCTGGTCCTTATTAAAGACAATGTCTGGGTAAAGGGAGTGACAGATAA
GGCTGCGGCGTCCCATGCAGAGTCAGATAAATAAAAGCCATTTATTTGTG
CAATGATATCCTCCAAACAAAATGTTTGAAAATGATTGAAAGTTGTTTTG
AGCTGCTTCACATTCTATTGCTTTAAAACAATAAAATTAATTGTAAAGTT
GATTTTGAATAAATTTGAATTGAATTCATAGGTTGCAGAGGGCTATGAAC
CCCTAGGTTTATTTCACCCCATATATACACCCCCTGCGCTCTATGCACCA
CTAAAAGTGATTACAGAGTACAAGATTTATAGTCACAAGTCAAAAATTAA
CAATATAACAATATAACTAGTGTTGTTTGGTGGTAAATATTTTTACCATT
TTGTATGATTGAAATGATCATAATTTCCAAATCCCCTTATCTTATTTGAC
CCCTCTAACATTCCCATACCTGCTACGAAAGACTGCTGTACGCAATGTTT
TTTTATATACAAAGACAAAGCAAATATACATATGCTGCTCTGCCACCCAA
ATTTCCTGAGTAAATATAGTTTGACAGAAATTCTTGATTTCTTCACATAT
ATTGGTCTAATGTTGACATCCCTTATCAAATTCTGACACATTTCTTTATA
GTTATGGGAATAAAAGGAAGGTCAGAATTGCTGAGATTTTTTATCCAAAA
TGCTTTGGGGGTAGTCTGGAGACAAAAAGAAAGATATGTTTGTAAATTTA
ACGAGTAATTAGCTTGTATAACTTGATCATGAGTTAGTATCAATGCGTGA
CAGAGTAAATAATCTCGAACCAACTTATACTTATGACTCTTCATTCATCA
AGTAAGAGTGTCAAATGATATTGGAAAATACAAAAAAATTCACACAGTCA
TAGCCATCTCATTTTGACCACAAGGACTTATGGATCACAAAAATTGACAG
TTTCAAAATTTTTTTGAAACAATTTTTTCTAACACAAACCACAATCTTTT
TTAACTGAGATGACAAGAGAATTACAAATTACACCCCTGTCTCACAGCCC
CGGTGGAACTTCTTCTCACAGTACAGTAGTGGGAATAAAAATTTATATCG
AAATCCCAGGGGTAAAGAAATTCTAATTGTTCCCAGGTCAAAAAAATCCA
GTAGGGATGGTTTTGGAGTACAATTTTTTTCAATTGAGTTTCAATTGGGG
ATGAAAATTAAATCAATTTTCCAGTAGGGCTGAAATTGTAGTAGGGTATT
TTCCCCAACCGGGACANGAAAATTAAATCAATTTTCCAGTAGGGCTGAAA
TTGTAGTAGGGTATTTTTCCCAACCGGGACGAAATTTTAGCCAAATTTTT
CAGAGGAAAGGAAGTCCTACTTGGTTTGTGAACAGAGGGTGTCTTATTGG
CATGTCATACTTTTGAGTTGTGTTTCACACTGTATTTTTTATTTGTAGTA
GCCATGTCCATGAAACGATCTGTCATTTATTTGTTCCAAAACGATTTACG
ACTTCATGACAATGAATGCTTAAAGATTGCTCAAAGTAAAGGGAATTTCT
TGATTCCCTTATATTGTTTCCAGCCCAACCATTTCAAGGTAAACTTTTCT
TAATACTTTGTACTATGCAAAGATCTAGCTGTTACATTCTTTTATTTAAA
AATGAAAAAAAAAATCTGCACTGTTTAAAGGAAAATNAGTCAAGTCTAAA
AAAGTAAGAATATGTTAAGAATATTTTGGCACTTTCTTAAAAATACTTGA
CCCTCATCCAAAGTACACTATTCTTATAAAAAAAAAGAAAATTGTAAAAA
TTTTTAAAACCCAGAAATTATCCCAAACTCACTTTTCTCTAACTCTCTTT
TTTATAGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAA
CAAAATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAA
CTTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAACCATCAA
AGACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCA
TTTATCAAAAAGAAGTGACTTCAGAAGAGATTGATTTGNTACTTCATACA
GGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAA
GGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCGCAAC
TTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCT
GGCNGACTACCCTGTTTGGGGTTTGTCATTGTTTCACAAGTAAGTTTCAG
TCTCCTCTCTGTGAATTCGGTATGATGTCAAATTTAATAGAGTTTCCTCA
TTTTTCTTAGTATTTTTTCTCTGACATATTTTTTTCTGTTGATAAAATTA
CTTAGTTTTATCAAATATTCGTTTCGGTTTCGAGCATAAATTAAGGAAGA
TAGGCTCCTACTCCTAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTAGA
CTAGTTTGAATCATGCTCTCTCTATGTTAGCATAGTTATTTGATTTTATT
GTTCTTATACTTTTAGAGATGACATTCCATACAATAAGAAGACCATCCCA
GATACATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAATTCG
TGATTTAATTCCTACACCACTAACCCTTAATAAACTGCCACCTATCAAAG
GTGCCAGTCTTGGTGATATCCCTACAATGGAGAAGTTGATCGGTGTTCAA
AGCTATATGCAAGATAACAGAACAGCTGTTCCACTAGAAGGTGGTGAAAG
TGCTGGCTTGAAACATCTCCAAAAATATCTTTGGGACACTGATGCCATTT
CAACTTACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAATACTCGACC
AAGTTTAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAGACAGATCTA
CCATGAAGTCAAGAGATATGAAAATCAACGTGTATCCAACCAATCCACTT
ACTGGAGTATCTTTGAACTGATCTGGAGAGATTACTTTAAATTTGTATGT
TGGAAATATGGGAGAAAAGTGTTCTATTTATCTGGCATCATGGGCAAACA
TTTACCTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGTGCCAAGGTG
AGACAGGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTACTTCATACA
GGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAA
GGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCACAAC
TTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCT
GGTATTGGTAATGATCCAAGACAAGACCGTAAATTCAATATGATCAAACA
AGCTCTTGATTATGATGCTGAAGGAAAATTTGTGAAAACTTGGGTTCCAG
AGCTTACCAATCTTCCTGCTAACAAGGTCCATGTACCTTGGACTATTCCT
GACCGGGAGCTACAAAGATTGGAGTTCTCATTAGGGCAGGACTACCCAAA
GCCTATGGTAATGGCACCTGAGTGGGGCCGACATACACATAAAACGAACG
GTAAAGCATTTCAAAAGAATGCAGAAAAGCCTCAAAGAGGGATTGATTTT
TATTTTAAATCACCAGATGCTGGCCCAAGTGGTCAGGGTTCTGCTGGAGG
AAAGAAAAACAAAAGGCGTTAAAATAATCAAATCTATGACGACGTACCGT
TGAAATTTTTAAGATTGGAAATCAAAATCTTTAGTGTGTTCTTAGTATGT
TGTGATATCTGACAGGTCAGATTTACCCTTACTACTACTCAGTGCTGTGT
TGTATAGTAAAGTGAAAACATAAAATACAGTATGCAAGCTAACTTGTTTT
GATTTTGAACGGTTGATACCACACATTTATAAAGCCCGAAGGGCTAGATG
TCGTGCTTTAAGCTCTTCTAAGCAAAAAAAAGTGAATATCGCAAAAAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
AAGAATATGTTAAGAATATTTTGGCACTTTCTTAAAAATACTTGACCCTC
ATCCAAAGTACACTATTCTTATAAAAAAAAAGAAAATTGTAAAAATTTTT
AAAACCCAGAAATTATCCCAAACTCCCTTTTCTCTAACTCTCTTTTTTAT
AGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAACAAAA
TTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAACTTGG
TTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAGCCATCAAAGACT
TGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCATTTAT
CAAAAAGAAGTGACTTCAGAAGAGATTGATTTAGAAAAACAAATCAAATC
TTTCTGCAAAGAACAAAGCATTGAAGACTACCCTGTTTGGGGTTTGTCAT
TGTTTCACAAGTAAGTTTCAGTCTCCTCTCTGTGAATTCGGTATGATGTC
AAATTTAATAGAGTTTCCTCATTTTTCTTAGTATTTTTTCTCTGACATAT
TTTTTTCTGTTGATAAAATTACTTAGTTTTATCAAATATTCGTTTCGGTT
TCGAGCATAAATTAAGGAAGATAGGCTCCTACTCCTAAGGCCTAAAAGCC
TGGAGCTGTCTATTGTGTAGACTAGTTTGAATCATGCTCTCTCTATGTTA
GCATAGTTATTTGATTTTATTGTTCTTATACTTTTAGAGATGACATTCCA
TACAATAAGAAGACCATCCCAGATACATATTCCAAGTTTCGTCAAGGAGT
AGAATCTAAAAGCGAAATTCGTGATTTAATTCCTACACCACTAACCCTTA
ATAAACTGCCACCTATCAAAGGTGCCAGTCTTGGTGATATCCCTACAATG
GAGAAGTTGATCGGTGTTCAAAGCTATATACAAGATAACAGAACAGCTGT
TCCACTAGAAGGTGGTGAAAGTGCTGGCTTGAAACATCTCCAAAAATATC
TTTGGGACACTGATGCCATTTCAACTTACAAAGAAACCAGGAATGGTCTA
TTAGGAGAAGAATACTCGACCAAGTTTAGTATCTGGCTTGCTAATGGTTC
TTTATCTCCAAGACAGATCTACCATGAAGTCAAGAGATATGAAAATCAAC
GTGTATCCAACCAATCCACTTACTGGAGTATCTTTGAACTGATCTGGAGA
GATTACTTTAAATTTGTATGTTGGAAATATGGGAGAAAAGTGTTCTATTT
ATCTGGCATCATGGGCAAACATTTACCTTGGAAACAAGACAAAATTGCTT
TTCAGAAATGGTGTCAAGGTGAGACAGGTGTTCCTTTTGTTGACGCAAAT
ATGAGAGAGTTACTTCATACAGGCTGGATGTCAAATCGGGGTCGTCAAAA
CGTGGCTAGTTTCTTGGTCAAGGACTTGAAATTAGACTGGCGTCTTGGAG
CCGAATGGTTCGAATCACAACTTCTTGATCATGATGTTTGCAGTAATTAT
GGTAATTGGAATTATTCAGCTGGCATTGGTAATGATCCAAGACAAGACCG
TAAATTCAATATGATCAAACAAGCTCTTGATTATGATGCTGAAGGAAAAT
TTGTGAAAACTTGGGTTCCAGAGCTTACCAATCTTCCTGCTAACAAGATC
CATGTACCTTGGACCATTCCTGACCGAGAGTNGAAGATAGGCTCCTACTC
CTAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTAGACTAGTTTGAATCA
TGCTCTCTCTATGTTAGCATAGTTATTTGATTTTATTGTTCTTATACTTT
TAGAGATGACATTCCATACAATAAGAAGACCATCCCAGATACATATTCCA
AGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAATTCGTGATTTAATTCCT
ACACCACTAACCCTTAATAAACTGCCACCTATCAAAGGTGCCAGTCTTGG
TGATATCCCTACAATGGAGAAGTTGATCGGTGTTCAAAGCTATATGCAAG
ATAACAGAACAGCTGTTCCACTAGAAGGTGGTGAAAGTGCTGGCTTGAAA
CATCTCCAAAAATATCTTTGGGACACTGATGCCATTTCAACTTACAAAGA
AACCAGGAATGGTCTATTAGGAGAAGAATACTCGACCAAGTTTAGTATCT
GGCTTGCTAATGGTTCTTTATCTCCAAGACAGATCTACCATGAAGTCAAG
AGATATGAAAATCAACGTGTATCCAACCAATCCACTTACTGGAGTATCTT
TGAACTGATCTGGAGAGATTACTTTAAATTTGTATGTTGGAAATATGGGA
GAAAAGTGTTCTATTTATCTGGCATCATGGGCAAACATTTACCTTGGAAA
CAAGACAAAATTGCTTTTCAGAAATGGTGTCAAGGTGAGACAGGTGTTCC
TTTTGTTGACGCAAATATGAGAGAGTTACTTCATACAGGCTGGATGTCAA
ATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGACTTGAAATTA
GACTGGCGTCTTGGAGCCGAATGGTTCGAATCACAACTTCTTGATCATGA
TGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCTGGCATTGGTAATG
ATCCAAGACAAGACCGTAAATTCAATATGATCAAACAAGCTCTTGATTAT
GATGCTGAAGGAAAATTTGTGAAAACTTGGGTTCCAGAGCTTACCAATCT
TCCTGCTAACAAGGTCCATGTACCTTGGACTATTCCTGACCGGGAGCTAC
AAAGATTGGAGTTCTCATTAGGGCAGGACTACCCAAAGCCTATGGTAATG
GCACCTGAGTGGGGCCGACATACACATAAAACGAACGGTAAAGCATTTCA
AAAGAATGCAGAAAAGCCTCAAAGAGGGATTGATTTTTATTTTAAATCAC
CAGATGCTGGCCCAAGTGGTCAGGGTTCTGCTGGAGGAAAGAAAAACCAA
AGGCGTTAAAATAATCAAATCTATGACGACGTACCGTTGAAATTTTTAAG
ATTGGAAATCAAAATCTTTAGTGTGTTCTTGGTATTTTGTGATATCTGAC
AGGTCAGATTTACCCTTACTACTATTGCTCAGTGCTGCGTTGTATAGTAA
AGTGAAAATATAAAATACAGTATGCAAGCTAACTTGTTTTGAACGGTTGA
TACCACACATTTATAAAGCCCGAAGGGCTAGATGTCGTGCTTTAAGCTCT
TCCAAGCAAAAAAAAGTGAATATCGCAAAAAGTATTGCTGCTGTTGTTCT
CGAAAACCTGCGAAGCTTTTTATTGTTCAAGCGCTGAAATTCTATTATAT
CACGTGACCTAGGTAGGATTTCCCATCTAAACTCGGCACACTTTTCAGCC
GAAGCACGACATCTAGCCATTCGGGCTTTTTAAATCTATGGTTGATACTA
CTATGAATATTATTTGAATGCATACGAGGGTATACGAAAATGGAATTTGT
ATTGTGTATTACATATAATGATTCAAGGATATGGGAGGATAGTATTTGTA
TCAAAACTAAAAAAAAACAATTTTAGAGAGTATTTTTAGATACTTTTATT
TATTTTGATATAACGTTTTATATAGATTGTGTTTTCATATAATGAAAATT
TATTTTAGCCAATGTCTTTGTTACTATAACTTGTCTTGACTACCATTATA
TACTTCAATTACTCATGTACTTTCCTATCCTACCAGTTTTGAACTAGAAT
CAGAAGCAATAGAAAATTCAGTTGATCTGCCTGATACTATTCTCTCA

Coding sequence (CDS) from alignment at scaffold_6:240540..250936-

>TCONS_00071179 ID=TCONS_00071179|Name=TCONS_00071179|organism=Clytia hemisphaerica|type=CDS|length=8160bp|location=Sequence derived from alignment at scaffold_6:240540..250936- (Clytia hemisphaerica)
ATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAATTCGTGATT
TAATTCCTACACCACTAACCCTTAATAAACTGCCACCTATCAAAGGTGCC
AGTCTTGGTGATATCCCTACAATGGAGAAGTTGATCGGTGTTCAAAGCTA
TATGCAAGATAACAGAACAGCTGTTCCACTAGAAGGTGGTGAAAGTGCTG
GCTTGAAACATCTCCAAAAATATCTTTGGGACACTGATGCCATTTCAACT
TACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAATACTCGACCAAGTT
TAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAGACAGATCTACCATG
AAGTCAAGAGATATGAAAATCAACGTGTATCCAACCAATCCACTTACTGG
AGTATCTTTGAACTGATCTGGAGAGATTACTTTAAATTTGTATGTTGGAA
ATATGGGAGAAAAGTGTTCTATTTATCTGGCATCATGGGCAAACATTTAC
CTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGTGTCAAGGTGAGACA
GGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTACTTCATACAGGCTG
GATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGACT
TGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCACAACTTCTT
GATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCTGGCAT
TGGTAATGATCCAAGACAAGACCGTAAATTCAATATGATCAAACAAGCTC
TTGATTATGATGCTGAAGGAAAATTTGTGAAAACTTGGGTTCCAGAGCTT
ACCAATCTTCCTGCTAACAAGGTCCATGTACCTTGGACTATTCCTGACCG
GGAGCTACAAAGATTGGAGTTCTCATTAGGGCAGGACTACCCAAAGCCTA
TGGTAATGGCACCTGAGTGGGGCCGACATACACATAAAACGAACGGTAAA
GCATTTCAAAAGAATGCAGAAAAGCCTCAAAGAGGGATTGATTTTTATTT
TAAATCACCAGATGCTGGCCCAAGTGGTCAGGGTTCTGCTGGAGGAAAGA
AAAACCAAAGGCGTTAAAGATGACATTCCATACAATAAGAAGACCATCCC
AGATACGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAAC
AAAATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAAC
TTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAGCCATCAAA
GACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCAT
TTATCAAAAAGAAGTGACTTCAGAAGAGATTGATTTAGAAAAACAAATCA
AATCTTTCTGCAAAGAACAAAGCATTGAAGACTACCCTGTTTGGGGTTTG
TCATTGTTTCACAATAGCCATGTCCATGAAACGATCTGTCATTTATTTGT
TCCAAAACGATTTACGACTTCATGACAATGAATGCTTAAAGATTGCTCAA
AGTAAAGGGAATTTCTTGATTCCCTTATATTGTTTCCAGCCCAACCATTT
CAAGATGTCTTTTACAAGATCAAAAAGTTCAAATATTCCAAGTTTCGTCA
AGGAGTAGAATCTAAAAGCGAAATTCGTGATTTAATTCCTACACCACTAA
CCCTTAATAAACTGCCACCTATCAAAGGTGCCAGTCTTGGTGATATCCCT
ACAATGGAGAAGTTGATCGGTGTTCAAAGCTATATGCAAGATAACAGAAC
AGCTGTTCCACTAGAAGGTGGTGAAAGTGCTGGCTTGAAACATCTCCAAA
AATATCTTTGGGACACTGATGCCATTTCAACTTACAAAGAAACCAGGAAT
GGTCTATTAGGAGAAGAATACTCGACCAAGTTTAGTATCTGGCTTGCTAA
TGGTTCTTTATCTCCAAGACAGATCTACCATGAAGTCAAGAGATATGAAA
ATCAACGTGTATCCAACCAATCCACTTACTGGAGTATCTTTGAACTGATC
TGGAGAGATTACTTTAAATTTGTATGTTGGAAATATGGGAGAAAAGTGTT
CTATTTATCTGGCATCATGGGCAAACATTTACCTTGGAAACAAGACAAAA
TTGCTTTTCAGAAATGGTGTCAAGGTGAGACAGGTGTTCCTTTTGTTGAC
GCAAATATGAGAGAGTTACTTCATACAGGCTGGATGTCAAATCGGGGTCG
TCAAAACGTGGCTAGTTTCTTGGTCAAGGACTTGAAATTAGACTGGCGTC
TTGGAGCCGAATGGTTCGAATCACAACTTCTTGATCATGATGTTTGCAGT
AATTATGGTAATTGGAATTATTCAGCTGGCATTGGTAATGATCCAAGACA
AGACCGTAAATTCAATATGATCAAACAAGCTCTTGATTATGATGCTGAAG
GAAAATTTGTGAAAACTTGGGTTCCAGAGCTTACCAATCTTCCTGCTAAC
AAGGTCCATGTACCTTGGACTATTCCTGACCGGGAGCTACAAAGATTGGA
GTTCTCATTAGGGCAGGACTACCCAAAGCCTATGGTAATGGCACCTGAGT
GGGGCCGACATACACATAAAACGAACGGTAAAGCATTTCAAAAGAATGCA
GAAAAGCCTCAAAGAGGGATTGATTTTTATTTTAAATCACCAGATGCTGG
CCCAAGTGGTCAGGGTTCTGCTGGAGGAAAGAAAAACCAAAGGCGTTAAA
GATGACATTCCATACAATAAGAAGACCATCCCAGATACGGAACGTATAGC
TTTAACTTGCCAAGAAGTGGTACACACAGAACAAAATTTCTCATTGAAAG
CATCACTGATCTACGTGCTAATCTACAAAAACTTGGTTCAAACTTAGTTG
TTCGAAATGAATCTCCACTGTCAGCCATCAAAGACTTGGTAAAACTTTGT
CAAAATTCTGAAGCACCTGTCTCCTCCATCATTTATCAAAAAGAAGTGAC
TTCAGAAGAGATTGATTTAGAAAAACAAATCAAATCTTTCTGCAAAGAAC
AAAGCATTGAAGACTACCCTGTTTGGGGTTTGTCATTGTTTCACAATAGC
CATGTCCATGAAACGATCTGTCATTTATTTGTTCCAAAACGATTTACGAC
TTCATGACAATGAATGCTTAAAGATTGCTCAAAGTAAAGGGAATTTCTTG
ATTCCCTTATATTGTTTCCAGCCCAACCATTTCAAGATGTCTTTTACAAG
ATCAAAAAGTTCAAATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAG
CGAAATTCGTGATTTAATTCCTACACCACTAACCCTTAATAAACTGCCAC
CTATCAAAGGTGCCAGTCTTGGTGATATCCCTACAATGGAGAAGTTGATC
GGTGTTCAAAGCTATATGCAAGATAACAGAACAGCTGTTCCACTAGAAGG
TGGTGAAAGTGCTGGCTTGAAACATCTCCAAAAATATCTTTGGGACACTG
ATGCCATTTCAACTTACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAA
TACTCGACCAAGTTTAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAG
ACAGATCTACCATGAAGTCAAGAGATATGAAAATCAACGTGTATCCAACC
AATCCACTTACTGGAGTATCTTTGAACTGATCTGGAGAGATTACTTTAAA
TTTGTATGTTGGAAATATGGGAGAAAAGTGTTCTATTTATCTGGCATCAT
GGGCAAACATTTACCTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGT
GTCAAGGTGAGACAGGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTA
CTTCATACAGGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTT
CTTGGTCAAGGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCG
AATCACAACTTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAAT
TATTCAGCTGGCATTGGTAATGATCCAAGACAAGACCGTAAATTCAATAT
GATCAAACAAGCTCTTGATTATGATGCTGAAGGAAAATTTGTGAAAACTT
GGGTTCCAGAGCTTACCAATCTTCCTGCTAACAAGGTCCATGTACCTTGG
ACTATTCCTGACCGGGAGCTACAAAGATTGGAGTTCTCATTAGGGCAGGA
CTACCCAAAGCCTATGGTAATGGCACCTGAGTGGGGCCGACATACACATA
AAACGAACGGTAAAGCATTTCAAAAGAATGCAGAAAAGCCTCAAAGAGGG
ATTGATTTTTATTTTAAATCACCAGATGCTGGCCCAAGTGGTCAGGGTTC
TGCTGGAGGAAAGAAAAACCAAAGGCGTTAAAGATGACATTCCATACAAT
AAGAAGACCATCCCAGATACGGAACGTATAGCTTTAACTTGCCAAGAAGT
GGTACACACAGAACAAAATTTCTCATTGAAAGCATCACTGATCTACGTGC
TAATCTACAAAAACTTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCAC
TGTCAGCCATCAAAGACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCT
GTCTCCTCCATCATTTATCAAAAAGAAGTGACTTCAGAAGAGATTGATTT
AGAAAAACAAATCAAATCTTTCTGCAAAGAACAAAGCATTGAAGACTACC
CTGTTTGGGGTTTGTCATTGTTTCACAATAGCCATGTCCATGAAACGATC
TGTCATTTATTTGTTCCAAAACGATTTACGACTTCATGACAATGAATGCT
TAAAGATTGCTCAAAGTAAAGGGAATTTCTTGATTCCCTTATATTGTTTC
CAGCCCAACCATTTCAAGATGTCTTTTACAAGATCAAAAAGTTCAAATAT
TCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAATTCGTGATTTAAT
TCCTACACCACTAACCCTTAATAAACTGCCACCTATCAAAGGTGCCAGTC
TTGGTGATATCCCTACAATGGAGAAGTTGATCGGTGTTCAAAGCTATATG
CAAGATAACAGAACAGCTGTTCCACTAGAAGGTGGTGAAAGTGCTGGCTT
GAAACATCTCCAAAAATATCTTTGGGACACTGATGCCATTTCAACTTACA
AAGAAACCAGGAATGGTCTATTAGGAGAAGAATACTCGACCAAGTTTAGT
ATCTGGCTTGCTAATGGTTCTTTATCTCCAAGACAGATCTACCATGAAGT
CAAGAGATATGAAAATCAACGTGTATCCAACCAATCCACTTACTGGAGTA
TCTTTGAACTGATCTGGAGAGATTACTTTAAATTTGTATGTTGGAAATAT
GGGAGAAAAGTGTTCTATTTATCTGGCATCATGGGCAAACATTTACCTTG
GAAACAAGACAAAATTGCTTTTCAGAAATGGTGTCAAGGTGAGACAGGTG
TTCCTTTTGTTGACGCAAATATGAGAGAGTTACTTCATACAGGCTGGATG
TCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGACTTGAA
ATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCACAACTTCTTGATC
ATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCTGGCATTGGT
AATGATCCAAGACAAGACCGTAAATTCAATATGATCAAACAAGCTCTTGA
TTATGATGCTGAAGGAAAATTTGTGAAAACTTGGGTTCCAGAGCTTACCA
ATCTTCCTGCTAACAAGGTCCATGTACCTTGGACTATTCCTGACCGGGAG
CTACAAAGATTGGAGTTCTCATTAGGGCAGGACTACCCAAAGCCTATGGT
AATGGCACCTGAGTGGGGCCGACATACACATAAAACGAACGGTAAAGCAT
TTCAAAAGAATGCAGAAAAGCCTCAAAGAGGGATTGATTTTTATTTTAAA
TCACCAGATGCTGGCCCAAGTGGTCAGGGTTCTGCTGGAGGAAAGAAAAA
CCAAAGGCGTTAAAGATGACATTCCATACAATAAGAAGACCATCCCAGAT
ACGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAACAAAA
TTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAACTTGG
TTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAGCCATCAAAGACT
TGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCATTTAT
CAAAAAGAAGTGACTTCAGAAGAGATTGATTTAGAAAAACAAATCAAATC
TTTCTGCAAAGAACAAAGCATTGAAGACTACCCTGTTTGGGGTTTGTCAT
TGTTTCACAATAGCCATGTCCATGAAACGATCTGTCATTTATTTGTTCCA
AAACGATTTACGACTTCATGACAATGAATGCTTAAAGATTGCTCAAAGTA
AAGGGAATTTCTTGATTCCCTTATATTGTTTCCAGCCCAACCATTTCAAG
ATGTCTTTTACAAGATCAAAAAGTTCAAATATTCCAAGTTTCGTCAAGGA
GTAGAATCTAAAAGCGAAATTCGTGATTTAATTCCTACACCACTAACCCT
TAATAAACTGCCACCTATCAAAGGTGCCAGTCTTGGTGATATCCCTACAA
TGGAGAAGTTGATCGGTGTTCAAAGCTATATGCAAGATAACAGAACAGCT
GTTCCACTAGAAGGTGGTGAAAGTGCTGGCTTGAAACATCTCCAAAAATA
TCTTTGGGACACTGATGCCATTTCAACTTACAAAGAAACCAGGAATGGTC
TATTAGGAGAAGAATACTCGACCAAGTTTAGTATCTGGCTTGCTAATGGT
TCTTTATCTCCAAGACAGATCTACCATGAAGTCAAGAGATATGAAAATCA
ACGTGTATCCAACCAATCCACTTACTGGAGTATCTTTGAACTGATCTGGA
GAGATTACTTTAAATTTGTATGTTGGAAATATGGGAGAAAAGTGTTCTAT
TTATCTGGCATCATGGGCAAACATTTACCTTGGAAACAAGACAAAATTGC
TTTTCAGAAATGGTGTCAAGGTGAGACAGGTGTTCCTTTTGTTGACGCAA
ATATGAGAGAGTTACTTCATACAGGCTGGATGTCAAATCGGGGTCGTCAA
AACGTGGCTAGTTTCTTGGTCAAGGACTTGAAATTAGACTGGCGTCTTGG
AGCCGAATGGTTCGAATCACAACTTCTTGATCATGATGTTTGCAGTAATT
ATGGTAATTGGAATTATTCAGCTGGCATTGGTAATGATCCAAGACAAGAC
CGTAAATTCAATATGATCAAACAAGCTCTTGATTATGATGCTGAAGGAAA
ATTTGTGAAAACTTGGGTTCCAGAGCTTACCAATCTTCCTGCTAACAAGG
TCCATGTACCTTGGACTATTCCTGACCGGGAGCTACAAAGATTGGAGTTC
TCATTAGGGCAGGACTACCCAAAGCCTATGGTAATGGCACCTGAGTGGGG
CCGACATACACATAAAACGAACGGTAAAGCATTTCAAAAGAATGCAGAAA
AGCCTCAAAGAGGGATTGATTTTTATTTTAAATCACCAGATGCTGGCCCA
AGTGGTCAGGGTTCTGCTGGAGGAAAGAAAAACCAAAGGCGTTAAAGATG
ACATTCCATACAATAAGAAGACCATCCCAGATACGGAACGTATAGCTTTA
ACTTGCCAAGAAGTGGTACACACAGAACAAAATTTCTCATTGAAAGCATC
ACTGATCTACGTGCTAATCTACAAAAACTTGGTTCAAACTTAGTTGTTCG
AAATGAATCTCCACTGTCAGCCATCAAAGACTTGGTAAAACTTTGTCAAA
ATTCTGAAGCACCTGTCTCCTCCATCATTTATCAAAAAGAAGTGACTTCA
GAAGAGATTGATTTAGAAAAACAAATCAAATCTTTCTGCAAAGAACAAAG
CATTGAAGACTACCCTGTTTGGGGTTTGTCATTGTTTCACAATAGCCATG
TCCATGAAACGATCTGTCATTTATTTGTTCCAAAACGATTTACGACTTCA
TGACAATGAATGCTTAAAGATTGCTCAAAGTAAAGGGAATTTCTTGATTC
CCTTATATTGTTTCCAGCCCAACCATTTCAAGATGTCTTTTACAAGATCA
AAAAGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044238XLOC_044238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071179-exon-scaffold_6-1575043694:250712..250936TCONS_00071179-exon-scaffold_6-1575043694:250712..250936Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1575043694:247199..247338TCONS_00071179-exon-scaffold_6-1575043694:247199..247338Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1575043694:243827..244134TCONS_00071179-exon-scaffold_6-1575043694:243827..244134Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1575043694:243511..243549TCONS_00071179-exon-scaffold_6-1575043694:243511..243549Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1575043694:240540..242444TCONS_00071179-exon-scaffold_6-1575043694:240540..242444Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1510915933:250712..250936TCONS_00071179-exon-scaffold_6-1510915933:250712..250936Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1510915933:247199..247338TCONS_00071179-exon-scaffold_6-1510915933:247199..247338Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1510915933:243827..244134TCONS_00071179-exon-scaffold_6-1510915933:243827..244134Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1510915933:243511..243549TCONS_00071179-exon-scaffold_6-1510915933:243511..243549Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1510915933:240540..242444TCONS_00071179-exon-scaffold_6-1510915933:240540..242444Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1491911889:250712..250936TCONS_00071179-exon-scaffold_6-1491911889:250712..250936Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1491911889:247199..247338TCONS_00071179-exon-scaffold_6-1491911889:247199..247338Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1491911889:243827..244134TCONS_00071179-exon-scaffold_6-1491911889:243827..244134Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1491911889:243511..243549TCONS_00071179-exon-scaffold_6-1491911889:243511..243549Clytia hemisphaericaexon
TCONS_00071179-exon-scaffold_6-1491911889:240540..242444TCONS_00071179-exon-scaffold_6-1491911889:240540..242444Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071179-proteinTCONS_00071179-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:240540..250936 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.56382	3.20844	0.0456058	1.06747	0.279171	0.316665	0.173659	0.140337	0.244335	0.0370903	0.096901	3.57863e-06	0.0461552	0	7.41271e-07	0	0.000353132	0.0411405	2.33777e-10	0.00252803	0.149009	2.74475	2.40381	4.21856	0.322522	0.392955	0.0453333	0.0329034	1.70701	0.209655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002081Cryptochrome/DNA_photolyase_1
IPR014133Cry_DASH
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
IPR005101Cryptochr/Photolyase_FAD-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003913DNA photolyase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003913 DNA photolyase activity
Blast
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BLAST of TCONS_00071179 vs. Swiss-Prot (Human)
Match: CRY1 (Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.755e-41
Identity = 146/537 (27.19%), Postives = 237/537 (44.13%), Query Frame = 3 
Query:  237 MKRSVIYLFQNDLRLHDNECLKIAQSKGNFLIPLYCFQPNHFKGTYSFNLPRSGTHRTKFLIESITDLRANLQKLGSNLVVRNESPLSAIKDLVKLCQNSEAPVSSIIYQKEVTSEEIDLEKQIKSFCKEQSIEDYPVWGLSLFHKDDI-PYNKKTIPDTYSKFRQGVESKSEIRDLIPTPLTLNKLPPIKGASLGD-------IPTMEKLIGVQSYMQDNRTAVPLEGGESAGLKHLQKYLWDTDAISTYKETR---NGLLGEEYSTKFSIWLANGSLSPRQIYHEVKRYENQRVSNQSTYWSIF-ELIWRDYFKFVCWKYGRKVFYLSGIMGKHLPWKQDKIAFQKWCQGETGVPFVDANMRELLHTGWMSNRGRQNVASFLVK-DLKLDWRLGAEWFESQLLDHDVCSNYGNWNYSAGIGNDPRQDRKFNMIKQALDYDAEGKFVKTWVPELTNLPANKVHVPWTIPDRELQRLEFSLGQDYPKPMVMAPEWGRHTHKTNGKAFQKNAEKPQRGIDFYFKSPDAGPSGQGSAGG 1808
            M  + ++ F+  LRLHDN  LK      + +  +Y   P  F G+ +      G +R +FL++ + DL ANL+KL S L V    P      L K    ++    SI Y  E   +E D    IK    E  +E       +L+  D I   N    P TY +F Q + SK E  + IP     +++       L D       +P++E+L     +  D  ++    GGE+  L  L+++L     ++ ++  R   N LL     T  S +L  G LS R  Y ++     +   N S   S++ +L+WR++F        R        +   +PW ++  A  KW +G TG P++DA M +L   GW+ +  R  VA FL + DL + W  G + FE  LLD D   N G+W + +      +    +  +      D  G +++ ++P L   PA  ++ PW  P+   +  +  +G +YPKPMV   E  R   +   + +Q+ +    RG+      P + P+G G   G
Sbjct:    1 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP-WFAGSSNV-----GINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL---SIEYDSEPFGKERD--AAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF-QTLISKMEPLE-IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL----GFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSR--YRGLGLLASVP-SNPNGNGGFMG 515
The following BLAST results are available for this feature:
BLAST of TCONS_00071179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRY15.755e-4127.19Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1[more]
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