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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00070745-protein ID=TCONS_00070745-protein|Name=TCONS_00070745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MDFVLENLNIKEAGSAIRFSFEIKIDDKIVGCCNISIGNSSKQISLTNGE
KSNFLFEPYKEQANYNSEVINHKDVSCILEQLVLPEPKGNIEQEDGSSHI
SQPDEDEDCFNDLIQDSETDKKSMKTKQVKKFAKSKKAENFLKAKKTKKS
MKVKKMESPKEFTDDSSDETPMKTKPQRALLLNRKDKRFMCIECGTMFTR
RNDQIKHMNNRHMGIKSHKCETCNKSFAHKGDLTRHKSQVHGKIRAFVCN
ICGKSFQRRGQQVTHLKEHEEQQGKASLKKNDRSTTDQMSNPIDTINQEP
NIHSIQQQPQNPYTVTDEQSVTISNHQTNNSSITQINSQTFTLL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 189..212
e-value: 0.037
score: 23.2
coord: 247..269
e-value: 0.0021
score: 27.3
coord: 218..241
e-value: 0.0035
score: 26.6 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 249..269 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 191..212 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 220..241 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 189..217
score: 10.97 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 247..274
score: 11.281 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 218..246
score: 11.697 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 211..256 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 186..221 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 157..199
e-value: 0.0027
score: 17.5
coord: 229..257
e-value: 5.1E-12
score: 45.5
coord: 200..228
e-value: 4.0E-11
score: 42.6 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 247..269
e-value: 6.1E-4
score: 20.0
coord: 218..241
e-value: 8.6E-4
score: 19.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 258..304
e-value: 6.3E-5
score: 22.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 89..108 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 266..298 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 146..174 |
Blast
The following BLAST results are available for this feature:
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