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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070745 ID=TCONS_00070745|Name=TCONS_00070745|organism=Clytia hemisphaerica|type=transcript|length=3594bp
TAAAGATCtgaaaatctataaaaactGATTCCGATGATAATgataaggga
actaattttggcaggaactaattttcgtgttttttggTGTCTACCGTGAA
AATAAGTTCCGCATAAATTATCTTAAAAAACCCCtaggaatatgaaagaa
tttcaGCAAAAAGTGGGTGTCAACAAAATTAGTTCTGCAAAGTGCaccac
aaaaattagttccgtgaaaattagttcccttaatgtgtcaaaataaaatt
caataaaatcactataaatatcaaaaaaagtaaaatggcaAAAAGAACGT
CTCCTAGTAAGTACACTGTCACTCAATTGGCTGTTCGATTTTGGTAGGGT
AAACTAAGAAACCACTAGAGGACTATTTGATCGTTTATCAACAATTGAGT
GACTGCTTAGTGGAAAAAAATAGGTGATTGTTGATTTAGAGGGAAGCTTA
AAAGCTAATCAATCGACAgaactggaaaaaaaattggttcGTTGATCCAT
AACAGACCGAAAGTGGCCTGACTGTTCATTTACCACAGTACCAGTGCTTG
ATGGTTGAATCAAAGTAAAGTGAATGTTTGACTGTTGATCTGTGTAATAG
AGGAATTGTTAGTTTGGTGATTTGAAATAGTAACAGACTGTTCATCTGTG
ACCGTGTAAGGATTCTGTGGTTGCTGTTGTATTGAGTGAATATTTGGTTC
TTGATTTATTGTATCAATAGGATTTGACATTTGATCTGTGGTAGAtctat
catttttttttaaacttgccTTTCCTTGTTGTTCTTCATGTTCTTTTAGA
TGCGTTACTTGTTGACCTCTTCGTTGAAAACTTTTTCCACAAATGTTGCA
TACAAAAGCTCTGATTTTCCCATGAACTTGACTTTTGTGTCTGGTTAGAT
CTCCTTTATGGGCAAATGATTTATTACATGTTTCACACTTGTGAGATTTG
ATACCCATATGCCGATTATTCATatgtttgatttgatcatttcgTCTTGT
AAACATTGTTCCACATTCTATACACATAAACCTTTTATCTTTTCTATTTA
AGAGCAGGGCACGCTGTGGCTTTGTTTTCATAGGGGTCTCATCAGAGCTA
TCATCAGTAAATTCTTTAGGAGActccatttttttaactttcatagattt
tttagtctttttggctttcaaaaaattttcagctttcttagattttgcaa
actttttaaCTTGCTTGGTCTTCATGGACTTTTTATCGGTTTCCGAGTCT
TGAATTAGATCATTAAAACAGTCTTCATCTTCATCTGGTTGGGATATATG
AGATGAACCATCTTCTTGTTCAATGTTTCCTTTAGGTTCAGGTAATACCA
ACTGCTCCAATATGCATGAAACATCCTTGTGGTTTATAACTTCTGAATTA
TAATTTGCTTGCTCTTTATAcggttcaaataaaaaattactcTTTTCGCC
ATTTGTTAAGGAGATTTGTTTCGATGAATTTCCTATAGAGATATTGCAGC
AGCCAACAATTttatcatcaattttgatttcaaaagaaaacctGATTGCT
GAGCCAGCTTCTTttatatttaaattttcaagaacAAAATCCATGTTTTA
TTTGATCATCTAGATAAAGAAAAAGAGAGCAAAGATCAATATTTTAACCC
ATTAATAATACCCTTAATTCTTAATTAACTATTAAACTTTCAACTTTTAT
ACATTAAGTATTGATATTACATTAAAATATGAACAGAACACGATTATAAA
TTTTTAATAGCACAATATCAATTGGATAAatatatatttcaaaagttata
aaaagaaatCGTCTTGGTGGCAGCCTCTTTGCCCCCTCCCCCCACCATGA
TGCTTGAAGAGTTAACCATTCTGACCCCTGGTCATACAAGTATAAAACAA
CTCCATCTTTTTCATTCCTCTTTGTATATTTATTACAAAGATTAACTACA
AAATGGTTAAAAGACCACAAATTGCGCATGGGCATTATTATGGGCTCCGA
TTGGCACATCCCATGTATAGAGTTTTTTCATATAACCAGACTCATTGTGG
TAAGGCTACCCTGTGTTGATTGATTGTTGAGCCACCCGTGATCGAAGGTT
TCGAAGACCAAATCTTTCTGATTCGTTATCATGTTCTTTCTGGTGTTTTG
TCAATTGATTTTTCCTTGCAAATTTTTTCCCACATAACTCACATTCAATA
CTTCTTATCTTCCCATGTACTTCATTTGTATGCCTGTTCAAATCACCTTT
ATGTGCAAATGACTTTGGACATGTTTCACACTTATGGGGTTTAATACCTA
GATGTAGATTGTTCATGTGTTTTTTCATATCATTTCTTCGTGTAAATAAT
GTACCACATTCGGTACACTTAAAGTGTTTgtcctttttatttttcaaact
ggAAGCTTTTTGTTGATTACTTTTGTCACATCGTCTCTCAGAACTTTTAT
CAATCAGTTTATTTTCAGATTCGTCTGTAGGGTTGGCTGATTCCTGATGT
CGAGAATCTAACTGTTCTAAGGACTTATCAATAATAATTAAAATTGTGTT
TTCCTCATTTTCTGATTGGTCATTAAGAATTATTTCATCTGAAAGAGAAA
CCTCTTGATCCATCTGACCATTGAAATGTTTTGATACATAAATTGTTAAG
GGTGAAATTTCTACATATCATTTTGCTAcatcattaaaaataaaaaacat
aaaaattaatttattcaAAGCAGTTTCATGAATAACACATCCTTAAAAAc
cctttaatgaaaattataattttaaatttgaaaattcctaAGTTATAGCC
ATAGCATCCATATAGTCAGGCCCAGAAACTTTTGCTAAAAAATCACACAA
CCCACAACAGGTTTTATATAATGTCTCTTACTAGCTCTATAAAATCGAAA
TACAAATGGCTTATCTTGAAATTTTAGCATCACAAACAAACTCTTCTTTA
TCCTGACAGGTAAAAAATTCAAGCAGACAAACACAGAAGCAGCCATCGAC
AAAAGATTCACAAAAATCGCTTTTGTAAACTGGGtggatttttatatttt
tggaatataTCCCCAATTTCCAATGTCATTGTTGTCCTCGCATCCATTGA
AACATAGAGTCATCACGATTTACACAGTTTTTTAATTATCCAACATGATA
TTGCGCCAAgcaaaaaaggtctattgatgtTGTTATGTGTTAAGAGCGTG
ATGATTTTCTCGGCGATAAAAACTTTGTAGAAGTTAATTCATATGGATAT
CTTTTTTATTAAGAATTACCTCTAATTATCGTGCTGGTCCTTTTTGCAAA
TAATTTACTTTTAGCTTTAAGATATTTGAGAGGGAAATGTTATATTGGCA
GCCGACCAAGCTAAACCTCTAAAGGAATagtaatcaaactaatcaaacat
ATTTGATCGCCAATCAGTATTATATAGACTAAAACTTCTATATCAAGACT
ACAGGATTCGGAGTCCgatttttactttcgttttcagtggtttcaaactt
tcgatttcaagccaacatgtTAGCAACAGATTGCTTGGCCCCTAAAAGTT
GTCTTGTTTATCCAAAATGACTATTGTTATTGATTTGGTGTTTG Run BLAST on NCBI protein sequence of TCONS_00070745-protein >TCONS_00070745-protein ID=TCONS_00070745-protein|Name=TCONS_00070745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MDFVLENLNIKEAGSAIRFSFEIKIDDKIVGCCNISIGNSSKQISLTNGE
KSNFLFEPYKEQANYNSEVINHKDVSCILEQLVLPEPKGNIEQEDGSSHI
SQPDEDEDCFNDLIQDSETDKKSMKTKQVKKFAKSKKAENFLKAKKTKKS
MKVKKMESPKEFTDDSSDETPMKTKPQRALLLNRKDKRFMCIECGTMFTR
RNDQIKHMNNRHMGIKSHKCETCNKSFAHKGDLTRHKSQVHGKIRAFVCN
ICGKSFQRRGQQVTHLKEHEEQQGKASLKKNDRSTTDQMSNPIDTINQEP
NIHSIQQQPQNPYTVTDEQSVTISNHQTNNSSITQINSQTFTLL Run BLAST on NCBI transcript from alignment at scaffold_57:606046..609639 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070745 ID=TCONS_00070745|Name=TCONS_00070745|organism=Clytia hemisphaerica|type=transcript|length=3594bp|location=Sequence derived from alignment at scaffold_57:606046..609639 (Clytia hemisphaerica)
CAAACACCAAATCAATAACAATAGTCATTTTGGATAAACAAGACAACTTT
TAGGGGCCAAGCAATCTGTTGCTAacatgttggcttgaaatcgaaagttt
gaaaccactgaaaacgaaagtaaaaatcGGACTCCGAATCCTGTAGTCTT
GATATAGAAGTTTTAGTCTATATAATACTGATTGGCGATCAAATatgttt
gattagtttgattactATTCCTTTAGAGGTTTAGCTTGGTCGGCTGCCAA
TATAACATTTCCCTCTCAAATATCTTAAAGCTAAAAGTAAATTATTTGCA
AAAAGGACCAGCACGATAATTAGAGGTAATTCTTAATAAAAAAGATATCC
ATATGAATTAACTTCTACAAAGTTTTTATCGCCGAGAAAATCATCACGCT
CTTAACACATAACAacatcaatagaccttttttgcTTGGCGCAATATCAT
GTTGGATAATTAAAAAACTGTGTAAATCGTGATGACTCTATGTTTCAATG
GATGCGAGGACAACAATGACATTGGAAATTGGGGAtatattccaaaaata
taaaaatccaCCCAGTTTACAAAAGCGATTTTTGTGAATCTTTTGTCGAT
GGCTGCTTCTGTGTTTGTCTGCTTGAATTTTTTACCTGTCAGGATAAAGA
AGAGTTTGTTTGTGATGCTAAAATTTCAAGATAAGCCATTTGTATTTCGA
TTTTATAGAGCTAGTAAGAGACATTATATAAAACCTGTTGTGGGTTGTGT
GATTTTTTAGCAAAAGTTTCTGGGCCTGACTATATGGATGCTATGGCTAT
AACTtaggaattttcaaatttaaaattataattttcattaaagggTTTTT
AAGGATGTGTTATTCATGAAACTGCTTtgaataaattaatttttatgttt
tttatttttaatgatgTAGCAAAATGATATGTAGAAATTTCACCCTTAAC
AATTTATGTATCAAAACATTTCAATGGTCAGATGGATCAAGAGGTTTCTC
TTTCAGATGAAATAATTCTTAATGACCAATCAGAAAATGAGGAAAACACA
ATTTTAATTATTATTGATAAGTCCTTAGAACAGTTAGATTCTCGACATCA
GGAATCAGCCAACCCTACAGACGAATCTGAAAATAAACTGATTGATAAAA
GTTCTGAGAGACGATGTGACAAAAGTAATCAACAAAAAGCTTccagtttg
aaaaataaaaaggacAAACACTTTAAGTGTACCGAATGTGGTACATTATT
TACACGAAGAAATGATATGAAAAAACACATGAACAATCTACATCTAGGTA
TTAAACCCCATAAGTGTGAAACATGTCCAAAGTCATTTGCACATAAAGGT
GATTTGAACAGGCATACAAATGAAGTACATGGGAAGATAAGAAGTATTGA
ATGTGAGTTATGTGGGAAAAAATTTGCAAGGAAAAATCAATTGACAAAAC
ACCAGAAAGAACATGATAACGAATCAGAAAGATTTGGTCTTCGAAACCTT
CGATCACGGGTGGCTCAACAATCAATCAACACAGGGTAGCCTTACCACAA
TGAGTCTGGTTATATGAAAAAACTCTATACATGGGATGTGCCAATCGGAG
CCCATAATAATGCCCATGCGCAATTTGTGGTCTTTTAACCATTTTGTAGT
TAATCTTTGTAATAAATATACAAAGAGGAATGAAAAAGATGGAGTTGTTT
TATACTTGTATGACCAGGGGTCAGAATGGTTAACTCTTCAAGCATCATGG
TGGGGGGAGGGGGCAAAGAGGCTGCCACCAAGACGatttctttttataac
ttttgaaatatatatTTATCCAATTGATATTGTGCTATTAAAAATTTATA
ATCGTGTTCTGTTCATATTTTAATGTAATATCAATACTTAATGTATAAAA
GTTGAAAGTTTAATAGTTAATTAAGAATTAAGGGTATTATTAATGGGTTA
AAATATTGATCTTTGCTCTCTTTTTCTTTATCTAGATGATCAAATAAAAC
ATGGATTTTgttcttgaaaatttaaatataaAAGAAGCTGGCTCAGCAAT
CaggttttcttttgaaatcaaaattgatgataaAATTGTTGGCTGCTGCA
ATATCTCTATAGGAAATTCATCGAAACAAATCTCCTTAACAAATGGCGAA
AAgagtaattttttatttgaaccgTATAAAGAGCAAGCAAATTATAATTC
AGAAGTTATAAACCACAAGGATGTTTCATGCATATTGGAGCAGTTGGTAT
TACCTGAACCTAAAGGAAACATTGAACAAGAAGATGGTTCATCTCATATA
TCCCAACCAGATGAAGATGAAGACTGTTTTAATGATCTAATTCAAGACTC
GGAAACCGATAAAAAGTCCATGAAGACCAAGCAAGttaaaaagtttgcaa
aatctaagaaagctgaaaattttttgaaagccaaaaagactaaaaaatct
atgaaagttaaaaaaatggagTCTCCTAAAGAATTTACTGATGATAGCTC
TGATGAGACCCCTATGAAAACAAAGCCACAGCGTGCCCTGCTCTTAAATA
GAAAAGATAAAAGGTTTATGTGTATAGAATGTGGAACAATGTTTACAAGA
cgaaatgatcaaatcaaacatATGAATAATCGGCATATGGGTATCAAATC
TCACAAGTGTGAAACATGTAATAAATCATTTGCCCATAAAGGAGATCTAA
CCAGACACAAAAGTCAAGTTCATGGGAAAATCAGAGCTTTTGTATGCAAC
ATTTGTGGAAAAAGTTTTCAACGAAGAGGTCAACAAGTAACGCATCTAAA
AGAACATGAAGAACAACAAGGAAAggcaagtttaaaaaaaaatgatagaT
CTACCACAGATCAAATGTCAAATCCTATTGATACAATAAATCAAGAACCA
AATATTCACTCAATACAACAGCAACCACAGAATCCTTACACGGTCACAGA
TGAACAGTCTGTTACTATTTCAAATCACCAAACTAACAATTCCTCTATTA
CACAGATCAACAGTCAAACATTCACTTTACTTTGATTCAACCATCAAGCA
CTGGTACTGTGGTAAATGAACAGTCAGGCCACTTTCGGTCTGTTATGGAT
CAACgaaccaattttttttccagttcTGTCGATTGATTAGCTTTTAAGCT
TCCCTCTAAATCAACAATCACCTATTTTTTTCCACTAAGCAGTCACTCAA
TTGTTGATAAACGATCAAATAGTCCTCTAGTGGTTTCTTAGTTTACCCTA
CCAAAATCGAACAGCCAATTGAGTGACAGTGTACTTACTAGGAGACGTTC
TTTTtgccattttactttttttgatatttatagtgattttattgaatttt
attttgacacattaagggaactaattttcacggaactaatttttgtggtG
CACTTTGCAGAACTAATTTTGTTGACACCCACTTTTTGCtgaaattcttt
catattcctaGGGGTTTTTTAAGATAATTTATGCGGAACTTATTTTCACG
GTAGACAccaaaaaacacgaaaattagttcctgccaaaattagttccctt
atcATTATCATCGGAATCagtttttatagattttcaGATCTTTA Coding sequence (CDS) from alignment at scaffold_57:606046..609639 >TCONS_00070745 ID=TCONS_00070745|Name=TCONS_00070745|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_57:606046..609639 (Clytia hemisphaerica)
ATGGATTTTgttcttgaaaatttaaatataaAAGAAGCTGGCTCAGCAAT
CaggttttcttttgaaatcaaaattgatgataaAATTGTTGGCTGCTGCA
ATATCTCTATAGGAAATTCATCGAAACAAATCTCCTTAACAAATGGCGAA
AAgagtaattttttatttgaaccgTATAAAGAGCAAGCAAATTATAATTC
AGAAGTTATAAACCACAAGGATGTTTCATGCATATTGGAGCAGTTGGTAT
TACCTGAACCTAAAGGAAACATTGAACAAGAAGATGGTTCATCTCATATA
TCCCAACCAGATGAAGATGAAGACTGTTTTAATGATCTAATTCAAGACTC
GGAAACCGATAAAAAGTCCATGAAGACCAAGCAAGttaaaaagtttgcaa
aatctaagaaagctgaaaattttttgaaagccaaaaagactaaaaaatct
atgaaagttaaaaaaatggagTCTCCTAAAGAATTTACTGATGATAGCTC
TGATGAGACCCCTATGAAAACAAAGCCACAGCGTGCCCTGCTCTTAAATA
GAAAAGATAAAAGGTTTATGTGTATAGAATGTGGAACAATGTTTACAAGA
cgaaatgatcaaatcaaacatATGAATAATCGGCATATGGGTATCAAATC
TCACAAGTGTGAAACATGTAATAAATCATTTGCCCATAAAGGAGATCTAA
CCAGACACAAAAGTCAAGTTCATGGGAAAATCAGAGCTTTTGTATGCAAC
ATTTGTGGAAAAAGTTTTCAACGAAGAGGTCAACAAGTAACGCATCTAAA
AGAACATGAAGAACAACAAGGAAAggcaagtttaaaaaaaaatgatagaT
CTACCACAGATCAAATGTCAAATCCTATTGATACAATAAATCAAGAACCA
AATATTCACTCAATACAACAGCAACCACAGAATCCTTACACGGTCACAGA
TGAACAGTCTGTTACTATTTCAAATCACCAAACTAACAATTCCTCTATTA
CACAGATCAACAGTCAAACATTCACTTTACTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070745-exon-scaffold_57-1491911889:606046..609639 | TCONS_00070745-exon-scaffold_57-1491911889:606046..609639 | Clytia hemisphaerica | exon |
| TCONS_00070745-exon-scaffold_57-1510915933:606046..609639 | TCONS_00070745-exon-scaffold_57-1510915933:606046..609639 | Clytia hemisphaerica | exon |
| TCONS_00070745-exon-scaffold_57-1575043694:606046..609639 | TCONS_00070745-exon-scaffold_57-1575043694:606046..609639 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:606046..609639 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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