TCONS_00070671-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070671-protein
Unique NameTCONS_00070671-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070671-protein ID=TCONS_00070671-protein|Name=TCONS_00070671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MIRTTESSSSSPYLPQESPNEVPHLPKMLAMTSAESSKSENVPALIQADA
NSNYQAAQQAVQVTSSAVHAHQIIHPIVNSIPHPLPPPPSSVGPPGSHQQ
AQVEEDDDHVKRPMNAFMVWSRTERRKLALKFPNMLNCEISKLLGAEWSR
MSDEDKSPYVQESKRLRTIHSQKYPDYSYKPRRRKRKTQQSQPPYPSINF
QSASANIPPPYQYPPAAGFAKISSDAFKMSSFGGGESGFPVPPLNDPGKA
LSYLNSAAAIGLPDMKSYYSLAPPNPNLFPPSSSNSYTSLSLTGNTPTNL
YSSSNTYMPAMFKDGPSHY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043969XLOC_043969Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070671TCONS_00070671Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 109..179
e-value: 7.2E-20
score: 82.0
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 103..197
e-value: 1.3E-26
score: 92.4
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 110..178
e-value: 1.6E-20
score: 73.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 110..178
score: 19.281
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 106..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..108
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 109..180
e-value: 3.3817E-30
score: 109.31

Blast
[Close]
BLAST of TCONS_00070671-protein vs. Swiss-Prot (Human)
Match: SOX3 (Transcription factor SOX-3 OS=Homo sapiens GN=SOX3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.203e-29
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 0 
Query:  106 DDDHVKRPMNAFMVWSRTERRKLALKFPNMLNCEISKLLGAEWSRMSDEDKSPYVQESKRLRTIHSQKYPDYSYKPRR 183
            D D VKRPMNAFMVWSR +RRK+AL+ P M N EISK LGA+W  ++D +K P++ E+KRLR +H ++YPDY Y+PRR
Sbjct:  135 DQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRR 212
The following BLAST results are available for this feature:
BLAST of TCONS_00070671-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX31.203e-2961.54Transcription factor SOX-3 OS=Homo sapiens GN=SOX3... [more]
back to top