TCONS_00070671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070671
Unique NameTCONS_00070671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070671 ID=TCONS_00070671|Name=TCONS_00070671|organism=Clytia hemisphaerica|type=transcript|length=2471bp
ATCAACGAAGCAATGCTTCCTTTAATGATCAAACAAGGGAAATTGGAGGA
TACGGCTTCAAATGTTGGATTTTGACTGAAACGACAACAATAGAGGATAG
GATCCACTCGTCAATACCAAATTCAACTTATCCTACAGAGAACTTGTTGA
AACATTAGAATACAGTATTTAGAATAAAAgATGATCCGAACAACGGAAAG
TAGCTCCAGTTCTCCATATCTTCCACAAGAATCACCAAATGAAGTGCCAC
ATCTACCAAAAATGTTAGCAATGACAagtgctgagtcatcaaaatcAGAA
AACGTTCCAGCGCTTATTCAAGCAGATGCCAACTCGAATTATCAGGCAGC
ACAGCAAGCAGTACAGGTGACGTCATCAGCGGTTCACGCTCATCAGATCA
TTCATCCCATTGTTAACTCAATACCACACCCACTTCCACCACCACCATCC
TCTGTAGGGCCACCGGGAAGCCACCAACAAGCACAGGTTGAGGAGGATGA
TGACCATGTGAAGCGACCAATGAATGCTTTCATGGTATGGTCACGAACAG
AGCGACGAAAACTGGCACTCAAATTCCCAAATATGTTAAATTGTGAAATC
TCCAAATTATTGGGCGCTGAATGGTCTCGTATGTCTGACGAGGATAAATC
ACCTTATGTTCAAGAAAGCAAAAGATTAAGGACAATTCACAGTCAAAAAT
ATCCCGATTACTCTTACAAACCAAGACGGAGGAAACGAAAAACGCAACAA
AGCCAACCGCCCTATCCATCAATTAACTTCCAAAGTGCATCCGCCAACAT
CCCACCACCCTACCAATATCCACCTGCAGCAGGATTCGCAAAAATCTCAT
CAGATGCATTTAAAATGTCCAGCTTTGGTGGTGGTGAAAGTGGCTTTCCA
GTACCGCCCCTTAACGATCCAGGAAAAGCACTCAGCTATCTTAATTCAGC
TGCCGCCATTGGATTACCAGATATGAAATCATACTATAGTCTCGCACCGC
CCAATCCAAATCTCTTTCCGCCCTCCTCGTCAAACAGCTATACCTCACTG
TCATTGACTGGGAACACACCAACTAACTTATATTCGTCCTCCAATACTTA
CATGCCAGCCATGTTTAAGGACGGACCAAGCCATTACTGAAAAAACGTCT
CATTTGACTCTAAGAATAAGACTaagtatttttaatcaaaaaaaaaattt
gaagcaCAGTTTTGGTCAAGATAATCCCTCATGAAAAATAAGTACAGTAT
GTCAATCGGTTGTGATAATTACAGTACTTCTTAACCAGAAGTTTAAACAT
CTTACGAAAGGTCAATCGTGTACATAAACCAAACAGATTATATTTATTCT
CAAGGTCattgtgaatcaaaattgattTGAACCTGGGATTCTAATCGCAG
ATTATTGCTAATAAGGATGGCTCTAATTCGTTGTTTCAAGATATTTATCA
TTTGCTGAAACCATGTTCTCAATGCATGACCATGACTATTAATCTATGAT
ATTATAAAATCAAACGTATTTAAAATATTATTCAAATTGCACCAAAGCAC
TGGTTGTCACATGACCTAAAAGCCAATTAGTTATGGTGCTTCAAAAGCTT
TTATACTGGATTATTGCTGTTGGCACCTTCAAAAACAGACAATATCAAGT
CAAATTTCAAGCTTGATAAAGGCATGTAAAGTTTATATCAGAAAGTAAAT
GTCAGTATCGGATCTGAGGAGGAGGGCTCAAAATTTATATCGGAGAGTCT
TAATTTCCTTATAAGGAGTATGGATAAAAGAAACACTCTCCATCGTTGAT
TTTGAACCGCTTTTAGATCCGCTGCTGAATGTAAACAGAGGAAGACTTTT
TATACTCGATTTTCATAATATTCATGATGTACTCTTTTATATACGGAAAC
ATGTGCCATTTTTGGTTAAACTCTAAAGTGGTAATTTCACAGCAGATCTT
CAACAACACCCATCCCTGAAAAGTTTTAGCTCGGGGTTTCGGAAACACAT
CTTCTATATAGAAACTTGGAGAATAGACCTTTACATAAATTACGCCACGA
ACATAAAAATactgccatggtgattaactaccagaggattttattaaaac
tactttctattcataaaaaaatcatttaatctctcaagggacataatcat
cATGGTacttgtttgaatacgaggcaattgatgttcgtgacgtaatttaa
aaaattcttattaaTCTTGTAAAGACTCGATCCTTTTCAaatgtttccgt
ataaaagattacgtcatgtatttcatgaattttaggTCTTTTTCACACCA
TCAGTTTTTATAAATTCTTTTAAGCTGGActttttttgtatatatttttt
ctctgCATCCACAtatataaaataattcttttgtgtACCTATTGTAAATA
AAGAAAGCATTCATTCATATTGTAAATTTTCAATAGCTTTaggtgaaaaa
gttttttcgactGAAAATTAT
Run BLAST on NCBI

protein sequence of TCONS_00070671-protein

>TCONS_00070671-protein ID=TCONS_00070671-protein|Name=TCONS_00070671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MIRTTESSSSSPYLPQESPNEVPHLPKMLAMTSAESSKSENVPALIQADA
NSNYQAAQQAVQVTSSAVHAHQIIHPIVNSIPHPLPPPPSSVGPPGSHQQ
AQVEEDDDHVKRPMNAFMVWSRTERRKLALKFPNMLNCEISKLLGAEWSR
MSDEDKSPYVQESKRLRTIHSQKYPDYSYKPRRRKRKTQQSQPPYPSINF
QSASANIPPPYQYPPAAGFAKISSDAFKMSSFGGGESGFPVPPLNDPGKA
LSYLNSAAAIGLPDMKSYYSLAPPNPNLFPPSSSNSYTSLSLTGNTPTNL
YSSSNTYMPAMFKDGPSHY
Run BLAST on NCBI

transcript from alignment at scaffold_57:358062..365462-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070671 ID=TCONS_00070671|Name=TCONS_00070671|organism=Clytia hemisphaerica|type=transcript|length=7401bp|location=Sequence derived from alignment at scaffold_57:358062..365462- (Clytia hemisphaerica)
ATCAACGAAGCAATGCTTCCTTTAATGATCAAACAAGGGAAATTGGAGGA
TACGGCTTCAAATGGTATGACGTTTGTACAATATTAAACCCCCGTCTTTA
TATACTGAATATGAGGAAACCATAGGGTTGTTGGACATTTTATGGACATC
AGATGGATGTTAGACCGACCATTTCGAAATGAAAAACAAAACACTTATTC
ATAATTGAGACACTCTTTCTGTATAGAAATGTTTCCTCCCTTAAGCTTTT
TTTTTTTCATAAAAAATATAACAAACATTTTTAAAATAATGTGAAAAAAA
AATCAAGGAGGATATTGTGATGGGTTAAATAAGAACTATACACACTAAAT
TCTCAATTTGGTGAAAAGACGTGTTTCAATATCGAATTAAATAAATAGTT
ATACAGTTCATTCGATAAAGTTGGATTTTGACTGAAACGACAACAATAGA
GGATAGGATCCACTCGTCAATACCAAATTCAACTTATCCTACAGAGAACT
TGTTGAAACATTAGAATACAGTATTTAGAATAAAAGGTAACAATTTTATT
TTTAATAATTCTATATTCTTTCCTATTCTAACATCACCTTTTTTGTTTAA
TCACTTATTGTTTTATCTTATTCTGTATAACTTGTATGGTACTAAGAAAG
GTCCATTTATACCCTATCAAACTCTTCTATATGATATTTACATATATCTT
ACTAGGGTTATTTTACTGTCCCAGTCAATAGGGAATTTTTAATTTCCCTT
AAAAGGAATGCACTTTGCAAAAATCCTTTTTTTTAGGAATCCTGTTTAAA
TTGTTTACTCACCTTGAGTATGACCTTAGCATATTTTTTTGCAGAAACTT
TACCGGCGTTTTAAACTATACTTGATAACGCCTCATTCAATTGGATGGCT
GACTTCTCTACTACCCCCTACCCCATAGAGTTGACTCTCACCAGTGAAAG
AGCTTTTGGCGCTAGCTTAATGTTACTTGAAAAGGGGGGGGGCGTACGGG
GTTTGCGATTTCCGAAATACCGAATAATTTTGCTAAAATTTCCGAAATTC
CGTAAAAAAATACTTGCAATTCCGATACCGATTTTTTGGGCATTTTTCCT
CGTTTTGACAAATTTTTCATCAAATTTGATTTTTCATGTATGAATTCCGA
AATACCGAATAATTTTGCTAAAATTTCCGAAATTCCGTAAAAAAATACTT
GCAATTCCGATACCGATTTTTTGGGTATTTTTCCTCGTTTTGACAAATTT
TTCATCAAATTTGATTTTTCATGTATGAATTCCGAAAAAAGGGGATAAAA
ACTTTATAATACCAAAATTTCGAAGCAAAAACTCATGGATTTCTGATACC
GAAACAATTTCAGAATTCCGAAATACCGAAGGAATTTTACCTAATTTCCA
AATTTCCGAAGAAAAAAGGGTCGATTTCGGCAATACCGAAAAACCGTACG
ATATCTCGACAAAGTTGTATAGTTTTTTTTTGGTGCACCCGGTAGAGAAG
ACAAGAAAAGATACTCTTAAGCACCCGATTTCTTAGAGAAAAGGACAAAA
ATACTCACAAAAAGGTGAAAATACAACCCTGCTTCGAAAATGTTTAGGCT
TATAAAGCTCAAAAAGTTAAACAACAAAGTTAAGAGCATCCGAAAATCTT
CAAAAATTTTGAATGGTCCTATTAAAAAAGGTAACTAATTGTAGCCAGTA
CCTTCCCACCAATTTTTTTCACTTTTTATAAGAACATCAAAAAACCTTTG
AAGCACTTTACAGCTTTACCCTATTAAATCAACCTAGACTTTTAGGGGCG
GTTCAGAACTAGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCT
AGTGGGTCTTTTTGGATGAAATTTGGCACACAAGATCCTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTT
CCTTTGTTCTTATAAATAGCTATTGTATTCTAACAAAGGCTTTAGAAAAA
AGTTGCCTGAGTTCAAAATGCTTATTTTTTCCTAAATATTCAATAAATGA
CGGTTTAAACGATATATTTGACATTAAAAATAGATTTGTACTGGAAAAGT
GTCAATTTTTGTGACACCTTACTGTCAGAAATGTCATCATGCTCAAGGTG
TGAAAATTTTTAGGTGTCAAATTTTTTTTTTTTTGAAGCTTAATAAAAGT
TAGGAATTTACAGAAAATCTCATGACAAAAGCTCTATTATTTTAGGAGCT
ATTACCAATAATTTGACCTCCGAACAGAAACAGCCCCCCCCCCTAGGCCG
AATAGGGTTAATCCTAAAAATATTCTTAACATGTTCTTATTTTCACCATT
TATATGAGTATTTTTGTCGATGTTCTTATATTGTTTGTTCTTATAAAAAG
AACGTATTCATTAATTGGAATGTTTACTTAAATTTGGTACGATTCTTCTA
ACTAGATGATCCGAACAACGGAAAGTAGCTCCAGTTCTCCATATCTTCCA
CAAGAATCACCAAATGAAGTGCCACATCTACCAAAAATGTTAGCAATGAC
AAGTGCTGAGTCATCAAAATCAGAAAACGTTCCAGCGCTTATTCAAGCAG
ATGCCAACTCGAATTATCAGGCAGCACAGCAAGCAGTACAGGTGACGTCA
TCAGCGGTTCACGCTCATCAGATCATTCATCCCATTGTTAACTCAATACC
ACACCCACTTCCACCACCACCATCCTCTGTAGGGCCACCGGGAAGCCACC
AACAAGCACAGGTGAATTGATCTTTTTTTCAAGGGTTTTGCTTTGTTTTT
TGATAGGCTGGAAAATGAGAAATTAACTCAAGCGAATTTTAGATCTTAGC
CTGGCGAATTCTTAGCAAGCCCATTGTATTTATCAGCGTGAGTATGTCGG
TNATGCCAACTCGAATTATCAGGCAGCACAGCAAGCAGTACAGGTGACGT
CATCAGTGGTTCACGCTCATCAGATTATTCATCCCCTTGTTAACTCAATA
CCACACCCACTTCCACCACCACCATCCTCTGTAGGGCCACCGGGAAGCCA
CCAACAAGCACAGGTGAATTGATCTTTTTTTCAAGGGTTTTGCTTTGTTT
TTTGATAGGCTGGAAAATGAGAAATTAACTCAAGCGAATTTTAGATCTTA
GCCTGGCGAATTCTTAGCAAGCCCATTGTATTTATCAGCGTGAGTATGTC
GGTACAAAAATATTGATAAAAAACGGGTTGTCCAAAACAATGTTTTAAAA
ACTAATGGATATTGTTTTGAGGATGAAAATTACATGAGTGTAATAGTAAA
GAGTGTATCTTTCAGAAAATAGCAATATATTCACCGAAAGAGTGGCATAG
GATGAAATACCACTTTTTATGTCACCCGAAATCGAAAATCGTGGAATTCT
TCATCCTTTTTGGACCTACCGGGAGGTCCTTTAATTTGACCGTTGTCCGT
TCGTCTGTTACAAGCTTTTCTCGGGATTGGCTCATTAGTTTTTTTTAATT
TTTTGCACAATGATACAAAATAGCAATGCCTGAAAAGTGACGGAGCCCGA
TTTTTGAAAAAAAAATTTGGGGTGCAAATTTGGGCCAAAATCTACCTAAA
AATAAGGTTTTTTGGACTTGGTGCAAAATTGCTTCATTAGTTTTTCCTGA
TTTTTGGCAGAAATATAGAGTGCAAGGTACCCNACATGTGCCAAAAAATG
GGGTTTTTTGGACTTTGTGTGAAATTGCTTCATTAGTTTTTTCAAATTAT
ATCTAAAACGTAACTCAAGCTTTTTTTTCCGGAAAAATTTTTTTGGCTGT
AAAAATCGGATTTTCTTATTTGGGGAAACTCCCTTTTGTCATATTTAGGG
AAAATGAGCATTTCTAGAGATTGGCTTGGTGTTTTTTTCTTATTTTTTGC
ATAGTGCTATAATATGGTAATATTTAATTTCTGATGGAGCCTGATTTTCG
AAAAAATAATTTTTTGAGCAAATTTGGGCAGAAAAGTTCCTATATTCAAG
CTGCTAATTACACTTTCTTACTCTCTTGCTATTTGTCCTACTTTTATCTG
ATTTTGATCACCAGGTAGGTCCATTCAGCATGTTGCTTGTTACTCCTTAA
ATTTAAATTTGAAAATTTATGGTATCAACAATAGATTTCCGAAGGGTTTA
GATGATAAAACCGTTTTAAAAATTGCTGTAGTAAAAATCAGAAAATCTTG
AATTTCTGGACTATTTCATCCCAAATTACTCCGAAACCTATATCATTGGA
ATCTTCGTGGAAAAATACTTCATTTTTGAAAATAAGGTCTCAAAATTCCT
AACATTAAAGTTCAAGAGTTCTTTTGATTTGGAGACGTACGATAAACCTC
CTCCAATCTGATCTTAAAAATGCCAAGAATTTTTGCAAAGAAATTAGGAT
TTTCCAGACAAAATCTGTGCACCCATGTTGAGGAGGCCCATTACCGTTCC
ATGGGGATAGGTTCTGAAATGCAGTGTCCATATGAGTAAAAATTGAAAAT
CTGTAAAGTTTCAGAATTCCAGAGAGTAATGATTCTGTAATTGCCTCAAA
TTCCAAGGCGGTAGGTCACAAAAAAGTAGACCTCGTCAACAGAGGGGGTA
CATGTTTTCTTTTGCTAGAAAAGCTAATTGGGCAGTCGACCCCCTGGACA
TTCAAAATTACCCTCAAACAGAGCAAGTTTACCCCCGGACAAGGCAAATT
TTGTAGATTTTTCACTACCCCCGGTAGACTGGAGCCGTTTATAATGCGTG
TAATACTAATAATACCAATACTAATAATAATAATAATACGGGATTTAGTT
TGTATAAACGACTGGAAGAATCCGGTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCGGCCACTATATCCTCCATCCACCCCC
CCATGTACGAACATTTTCTGGAAGAGCCTATTGTGTAATCTTTGAATTCT
TTAAAAACGTTTTCAGGTTGAGGAGGATGATGACCATGTGAAGCGACCAA
TGAATGCTTTCATGGTATGGTCACGAACAGAGCGACGAAAACTGGCACTC
AAATTCCCAAATATGTTAAATTGTGAAATCTCCAAATTATTGGGCGCTGA
ATGGTCTCGTATGTCTGACGAGGATAAATCACCTTATGTTCAAGAAAGCA
AAAGATTAAGGACAATTCACAGTCAAAAATATCCCGATTACTCTTACAAA
CCAAGACGGAGGAAACGAAAAACGCAACAAAGCCAACCGCCCTATCCATC
AATTAACTTCCAAAGTGCATCCGCCAACATCCCACCACCCTACCAATATC
CACCTGCAGCAGGATTCGCAAAAATCTCATCAGATGCATTTAAAATGTCC
AGCTTTGGTGGTGGTGAAAGTGGCTTTCCAGTACCGCCCCTTAACGATCC
AGGAAAAGCACTCAGCTATCTTAATTCAGCTGCCGCCATTGGATTACCAG
ATATGAAATCATACTATAGTCTCGCACCGCCCAATCCAAATCTCTTTCCG
CCCTCCTCGTCAAACAGCTATACCTCACTGTCATTGACTGGGAACACACC
AACTAACTTATATTCGTCCTCCAATACTTACATGCCAGCCATGTTTAAGG
ACGGACCAAGCCATTACTGAAAAAACGTCTCATTTGACTCTAAGAATAAG
ACTAAGTATTTTTAATCAAAAAAAAAATTTGAAGCACAGTTTTGGTCAAG
ATAATCCCTCATGAAAAATAAGTACAGTATGTCAATCGGTTGTGATAATT
ACAGTACTTCTTAACCAGAAGTTTAAACATCTTACGAAAGGTCAATCGTG
TACATAAACCAAACAGATTATATTTATTCTCAAGGTCATTGTGAATCAAA
ATTGATTTGAACCTGGGATTCTAATCGCAGATTATTGCTAATAAGGATGG
CTCTAATTCGTTGTTTCAAGATATTTATCATTTGCTGAAACCATGTTCTC
AATGCATGACCATGACTATTAATCTATGATATTATAAAATCAAACGTATT
TAAAATATTATTCAAATTGCACCAAAGCACTGGTTGTCACATGACCTAAA
AGCCAATTAGTTATGGTGCTTCAAAAGCTTTTATACTGGATTATTGCTGT
TGGCACCTTCAAAAACAGACAATATCAAGTCAAATTTCAAGCTTGATAAA
GGCATGTAAAGTTTATATCAGAAAGTAAATGTCAGTATCGGATCTGAGGA
GGAGGGCTCAAAATTTATATCGGAGAGTCTTAATTTCCTTATAAGGAGTA
TGGATAAAAGAAACACTCTCCATCGTTGATTTTGAACCGCTTTTAGATCC
GCTGCTGAATGTAAACAGAGGAAGACTTTTTATACTCGATTTTCATAATA
TTCATGATGTACTCTTTTATATACGGAAACATGTGCCATTTTTGGTTAAA
CTCTAAAGTGGTAATTTCACAGCAGATCTTCAACAACACCCATCCCTGAA
AAGTTTTAGCTCGGGGTTTCGGAAACACATCTTCTATATAGAAACTTGGA
GAATAGACCTTTACATAAATTACGCCACGAACATAAAAATACTGCCATGG
TGATTAACTACCAGAGGATTTTATTAAAACTACTTTCTATTCATAAAAAA
ATCATTTAATCTCTCAAGGGACATAATCATCATGGTACTTGTTTGAATAC
GAGGCAATTGATGTTCGTGACGTAATTTAAAAAATTCTTATTAATCTTGT
AAAGACTCGATCCTTTTCAAATGTTTCCGTATAAAAGATTACGTCATGTA
TTTCATGAATTTTAGGTCTTTTTCACACCATCAGTTTTTATAAATTCTTT
TAAGCTGGACTTTTTTTGTATATATTTTTTCTCTGCATCCACATATATAA
AATAATTCTTTTGTGTACCTATTGTAAATAAAGAAAGCATTCATTCATAT
TGTAAATTTTCAATAGCTTTAGGTGAAAAAGTTTTTTCGACTGAAAATTA
T

Coding sequence (CDS) from alignment at scaffold_57:358062..365462-

>TCONS_00070671 ID=TCONS_00070671|Name=TCONS_00070671|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_57:358062..365462- (Clytia hemisphaerica)
GTTGAGGAGGATGATGACCATGTGAAGCGACCAATGAATGCTTTCATGGT
ATGGTCACGAACAGAGCGACGAAAACTGGCACTCAAATTCCCAAATATGT
TAAATTGTGAAATCTCCAAATTATTGGGCGCTGAATGGTCTCGTATGTCT
GACGAGGATAAATCACCTTATGTTCAAGAAAGCAAAAGATTAAGGACAAT
TCACAGTCAAAAATATCCCGATTACTCTTACAAACCAAGACGGAGGAAAC
GAAAAACGCAACAAAGCCAACCGCCCTATCCATCAATTAACTTCCAAAGT
GCATCCGCCAACATCCCACCACCCTACCAATATCCACCTGCAGCAGGATT
CGCAAAAATCTCATCAGATGCATTTAAAATGTCCAGCTTTGGTGGTGGTG
AAAGTGGCTTTCCAGTACCGCCCCTTAACGATCCAGGAAAAGCACTCAGC
TATCTTAATTCAGCTGCCGCCATTGGATTACCAGATATGAAATCATACTA
TAGTCTCGCACCGCCCAATCCAAATCTCTTTCCGCCCTCCTCGTCAAACA
GCTATACCTCACTGTCATTGACTGGGAACACACCAACTAACTTATATTCG
TCCTCCAATACTTACATGCCAGCCATGTTTAAGGACGGACCAAGCCATTA
CTGAATGATCCGAACAACGGAAAGTAGCTCCAGTTCTCCATATCTTCCAC
AAGAATCACCAAATGAAGTGCCACATCTACCAAAAATGTTAGCAATGACA
AGTGCTGAGTCATCAAAATCAGAAAACGTTCCAGCGCTTATTCAAGCAGA
TGCCAACTCGAATTATCAGGCAGCACAGCAAGCAGTACAGGTGACGTCAT
CAGCGGTTCACGCTCATCAGATCATTCATCCCATTGTTAACTCAATACCA
CACCCACTTCCACCACCACCATCCTCTGTAGGGCCACCGGGAAGCCACCA
ACAAGCACAGGTTGAGGAGGATGATGACCATGTGAAGCGACCAATGAATG
CTTTCATGGTATGGTCACGAACAGAGCGACGAAAACTGGCACTCAAATTC
CCAAATATGTTAAATTGTGAAATCTCCAAATTATTGGGCGCTGAATGGTC
TCGTATGTCTGACGAGGATAAATCACCTTATGTTCAAGAAAGCAAAAGAT
TAAGGACAATTCACAGTCAAAAATATCCCGATTACTCTTACAAACCAAGA
CGGAGGAAACGAAAAACGCAACAAAGCCAACCGCCCTATCCATCAATTAA
CTTCCAAAGTGCATCCGCCAACATCCCACCACCCTACCAATATCCACCTG
CAGCAGGATTCGCAAAAATCTCATCAGATGCATTTAAAATGTCCAGCTTT
GGTGGTGGTGAAAGTGGCTTTCCAGTACCGCCCCTTAACGATCCAGGAAA
AGCACTCAGCTATCTTAATTCAGCTGCCGCCATTGGATTACCAGATATGA
AATCATACTATAGTCTCGCACCGCCCAATCCAAATCTCTTTCCGCCCTCC
TCGTCAAACAGCTATACCTCACTGTCATTGACTGGGAACACACCAACTAA
CTTATATTCGTCCTCCAATACTTACATGCCAGCCATGTTTAAGGACGGAC
CAAGCCATTACTGAATGATCCGAACAACGGAAAGTAGCTCCAGTTCTCCA
TATCTTCCACAAGAATCACCAAATGAAGTGCCACATCTACCAAAAATGTT
AGCAATGACAAGTGCTGAGTCATCAAAATCAGAAAACGTTCCAGCGCTTA
TTCAAGCAGATGCCAACTCGAATTATCAGGCAGCACAGCAAGCAGTACAG
GTGACGTCATCAGCGGTTCACGCTCATCAGATCATTCATCCCATTGTTAA
CTCAATACCACACCCACTTCCACCACCACCATCCTCTGTAGGGCCACCGG
GAAGCCACCAACAAGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043969XLOC_043969Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070671-proteinTCONS_00070671-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070671-exon-scaffold_57-1575043694:365399..365462TCONS_00070671-exon-scaffold_57-1575043694:365399..365462Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1575043694:364927..365042TCONS_00070671-exon-scaffold_57-1575043694:364927..365042Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1575043694:362552..362857TCONS_00070671-exon-scaffold_57-1575043694:362552..362857Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1575043694:358062..360046TCONS_00070671-exon-scaffold_57-1575043694:358062..360046Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1510915933:365399..365462TCONS_00070671-exon-scaffold_57-1510915933:365399..365462Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1510915933:364927..365042TCONS_00070671-exon-scaffold_57-1510915933:364927..365042Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1510915933:362552..362857TCONS_00070671-exon-scaffold_57-1510915933:362552..362857Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1510915933:358062..360046TCONS_00070671-exon-scaffold_57-1510915933:358062..360046Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1491911889:365399..365462TCONS_00070671-exon-scaffold_57-1491911889:365399..365462Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1491911889:364927..365042TCONS_00070671-exon-scaffold_57-1491911889:364927..365042Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1491911889:362552..362857TCONS_00070671-exon-scaffold_57-1491911889:362552..362857Clytia hemisphaericaexon
TCONS_00070671-exon-scaffold_57-1491911889:358062..360046TCONS_00070671-exon-scaffold_57-1491911889:358062..360046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:358062..365462 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44008e-05	0.210301	0.166638	0.295539	2.56457	3.00014	20.5861	23.5878	4.71576	4.88989	4.22333	3.87277	15.9926	15.7058	8.40682	27.8243	8.82499	10.8115	7.80202	9.48643	6.44729	6.48409	4.79929	3.38964	9.67007	13.71	2.60076	0.687339	0.617994	0.456709
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Blast
[Close]
BLAST of TCONS_00070671 vs. Swiss-Prot (Human)
Match: SOX3 (Transcription factor SOX-3 OS=Homo sapiens GN=SOX3 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.056e-26
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:  496 DDDHVKRPMNAFMVWSRTERRKLALKFPNMLNCEISKLLGAEWSRMSDEDKSPYVQESKRLRTIHSQKYPDYSYKPRR 729
            D D VKRPMNAFMVWSR +RRK+AL+ P M N EISK LGA+W  ++D +K P++ E+KRLR +H ++YPDY Y+PRR
Sbjct:  135 DQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRR 212
The following BLAST results are available for this feature:
BLAST of TCONS_00070671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX31.056e-2661.54Transcription factor SOX-3 OS=Homo sapiens GN=SOX3... [more]
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