TCONS_00069262-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069262-protein
Unique Name	TCONS_00069262-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	514

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069262-protein ID=TCONS_00069262-protein|Name=TCONS_00069262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MTQWNIQDIEIRTRSVEKVLVPLIAQVGVLVNQGSNENYRDNVSEKVKTA
LPNLELSIFKFTSIGHEMGNANDNIRDDMVESCDATNKACNTIVSMLNTD
ENNNAQEPTSEKTLSDAAKILLSAITKILILADRTAILKLVKSAAKVNAR
LEELESVTNFTEFVNAFSQFGGDMVELAYVSGERQNDLRDELQRAEVCAA
RAILEKSTMMLLTTCKTCLRHPDSPLAKGIRGAVFQSMRDAMTTLKAVIE
NNECPGKAFCCGISLDLNNTKEGIEDLLKNPKDYQKMENLIDTVDNINID
MEDLINKENIEDSRKSLLKALIMQSKGLHKNLLEFVEDDQVTEDEENIYK
TLRELSDICDEMLEESSKASAEQVFHLVETCEYKEVLARLKESALSGELD
KVEETAERLESVLSEILQVTRLTKATSNIDACIITATRLEENLINLMPQA
IDAGKMLSAHPTSKITQENFEVFIDVWDTQVDELLTLLRNITEGHTENNE
WLTIYIPMASKINS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043153	XLOC_043153	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069262	TCONS_00069262	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001033	Alpha_catenin
IPR006077	Vinculin/catenin

Vocabulary: **Molecular Function**
Term	Definition
GO:0045296	cadherin binding
GO:0051015	actin filament binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007155	cell adhesion

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007155	cell adhesion
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0045296	cadherin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 392..419
None	No IPR available	COILS	Coil	Coil	coord: 287..307
None	No IPR available	GENE3D	1.20.120.230		coord: 308..492 e-value: 4.2E-11 score: 42.5
None	No IPR available	GENE3D	1.20.120.230		coord: 36..251 e-value: 5.0E-24 score: 84.6
IPR001033	Alpha-catenin	PRINTS	PR00805	ALPHACATENIN	coord: 3..27 score: 49.78 coord: 119..137 score: 52.63
IPR006077	Vinculin/alpha-catenin	PFAM	PF01044	Vinculin	coord: 10..255 e-value: 6.9E-29 score: 100.6
IPR006077	Vinculin/alpha-catenin	SUPERFAMILY	47220	alpha-catenin/vinculin-like	coord: 53..249
IPR006077	Vinculin/alpha-catenin	SUPERFAMILY	47220	alpha-catenin/vinculin-like	coord: 368..493

Blast

[Close]

BLAST of TCONS_00069262-protein vs. Swiss-Prot (Human)
Match: CTNL1 (Alpha-catulin OS=Homo sapiens GN=CTNNAL1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.712e-65
Identity = 166/520 (31.92%), Postives = 282/520 (54.23%), Query Frame = 0

Query:    9 IEIRTRSVEKVLVPLIAQVGVLVNQGSNENYRDNVSEKVKTALPNLELSIFKFTSIGHEMGNANDNIRDDMVESCDATNKACNTIVSM-----LNTDENNNAQEPTSEKT-LSDAAKILLSAITKILILADRTAILKLVKSAAKVNARLEELESVTNFTEFVNAFSQFGGDMVELAYVSGERQNDLRDELQRAEVCAARAILEKSTMMLLTTCKTCLRHPDSPLAKGIRGAVFQSMRDAMTTLKAVIENNECPGKAFCCGISL--DLNNTKEGIEDLLKNPKDYQKMENLIDTVDNINIDMEDLINKENIEDSRKSLLKALIMQSKGLHKNLLEF---VEDDQVTEDEENIYKTLRELSDICDEMLEESSKASAEQVFHLVETCEYKEVLARLKESALSGELDKVEETAERLESVLSEILQVTRLTKATSNIDACIITATRLEENLINLMPQAIDAGKMLSAHPTSKITQENFEVFIDVWDTQVDELLTLLRNIT---EG-HTENNEWLTIYIPMASKIN 513
            +EI+TRSVE+ L+PL++Q+  L+N   N    D   + ++     + L++ +F  +G  + N N ++++++  +C    +A  TI ++     LN  E++      ++KT +  AA++LLS++TK+L+LADR  I +++ S  KV A +E LE V +F EFV  FSQFG +MVE A++SG+RQNDL+DE ++A++ AARA+LEK TMMLLT  KTCLRHP+   A   +  VF  M+ A+  +  ++ + +  G+     IS+   +   K  IE L +N   +Q  ENL  T++ I   MED  +        +  +  L  Q++   + L+      +  +     E +  ++ ++S   +E+ +E    + +    L++      VL  LK + + G L+ + E A +L     ++++  RL +  S  +   IT    EE       Q I A + L+ HP+SKI +EN +VF + W++Q+ ++ TLLR I    EG   E   +L++  PM +  N
Sbjct:   30 LEIKTRSVEQTLLPLVSQITTLINHKDNTKKSDKTLQAIQRVGQAVNLAVGRFVKVGEAIANENWDLKEEINIACIEAKQAGETIAALTDITNLNHLESDGQITIFTDKTGVIKAARLLLSSVTKVLLLADRVVIKQIITSRNKVLATMERLEKVNSFQEFVQIFSQFGNEMVEFAHLSGDRQNDLKDEKKKAKMAAARAVLEKCTMMLLTASKTCLRHPNCESAHKNKEGVFDRMKVALDKVIEIVTDCKPNGETDISSISIFTGIKEFKMNIEALRENLY-FQSKENLSVTLEVILERMEDFTDSAYTSHEHRERILELSTQARMELQQLISVWIQAQSKKTKSIAEELELSILKISHSLNELKKELHSTATQLAADLLKYHADHVVLKALKLTGVEGNLEALAEYACKLSEQKEQLVETCRLLRHISGTEPLEITCIHAEETFQVTGQQIISAAETLTLHPSSKIAKENLDVFCEAWESQISDMSTLLREINDVFEGRRGEKYGYLSLPKPMKNNAN 548

The following BLAST results are available for this feature:

BLAST of TCONS_00069262-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069262-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTNL1	6.712e-65	31.92	Alpha-catulin OS=Homo sapiens GN=CTNNAL1 PE=1 SV=2	[more]

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TCONS_00069262-protein (polypeptide) - C. hemisphaerica