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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069262 ID=TCONS_00069262|Name=TCONS_00069262|organism=Clytia hemisphaerica|type=transcript|length=3283bpRun BLAST on NCBI protein sequence of TCONS_00069262-protein >TCONS_00069262-protein ID=TCONS_00069262-protein|Name=TCONS_00069262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp MTQWNIQDIEIRTRSVEKVLVPLIAQVGVLVNQGSNENYRDNVSEKVKTARun BLAST on NCBI transcript from alignment at scaffold_496:505753..517408- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069262 ID=TCONS_00069262|Name=TCONS_00069262|organism=Clytia hemisphaerica|type=transcript|length=11656bp|location=Sequence derived from alignment at scaffold_496:505753..517408- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_496:505753..517408- >TCONS_00069262 ID=TCONS_00069262|Name=TCONS_00069262|organism=Clytia hemisphaerica|type=CDS|length=18540bp|location=Sequence derived from alignment at scaffold_496:505753..517408- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069262 vs. Swiss-Prot (Human)
Match: CTNL1 (Alpha-catulin OS=Homo sapiens GN=CTNNAL1 PE=1 SV=2) HSP 1 Score: 199.134 bits (505), Expect = 7.319e-53 Identity = 166/520 (31.92%), Postives = 282/520 (54.23%), Query Frame = 2
Query: 767 IEIRTRSVEKVLVPLIAQVGVLVNQGSNENYRDNVSEKVKTALPNLELSIFKFTSIGHEMGNANDNIRDDMVESCDATNKACNTIVSM-----LNTDENNNAQEPTSEKT-LSDAAKILLSAITKILILADRTAILKLVKSAAKVNARLEELESVTNFTEFVNAFSQFGGDMVELAYVSGERQNDLRDELQRAEVCAARAILEKSXXXXXXXXXXXXRHPDSPLAKGIRGAVFQSMRDAMTTLKAVIENNECPGKAFCCGISL--DLNNTKEGIEDLLKNPKDYQKMENLIDTVDNINIDMEDLINKENIEDSRKSLLKALIMQSKGLHKNLLEF---VEDDQVTEDEENIYKTLRELSDICDEMLEESSKASAEQVFHLVETCEYKEVLARLKESALSGELDKVEETAERLESVLSEILQVTRLTKATSNIDACIITATRLEENLINLMPQAIDAGKMLSAHPTSKITQENFEVFIDVWDTQVDELLTLLRNIT---EG-HTENNEWLTIYIPMASKIN 2281
+EI+TRSVE+ L+PL++Q+ L+N N D + ++ + L++ +F +G + N N ++++++ +C +A TI ++ LN E++ ++KT + AA++LLS++TK+L+LADR I +++ S KV A +E LE V +F EFV FSQFG +MVE A++SG+RQNDL+DE ++A++ AARA+LEK TMMLLT KTCLRHP+ A + VF M+ A+ + ++ + + G+ IS+ + K IE L +N +Q ENL T++ I MED + + + L Q++ + L+ + + E + ++ ++S +E+ +E + + L++ VL LK + + G L+ + E A +L ++++ RL + S + IT EE Q I A + L+ HP+SKI +EN +VF + W++Q+ ++ TLLR I EG E +L++ PM + N
Sbjct: 30 LEIKTRSVEQTLLPLVSQITTLINHKDNTKKSDKTLQAIQRVGQAVNLAVGRFVKVGEAIANENWDLKEEINIACIEAKQAGETIAALTDITNLNHLESDGQITIFTDKTGVIKAARLLLSSVTKVLLLADRVVIKQIITSRNKVLATMERLEKVNSFQEFVQIFSQFGNEMVEFAHLSGDRQNDLKDEKKKAKMAAARAVLEKCTMMLLTASKTCLRHPNCESAHKNKEGVFDRMKVALDKVIEIVTDCKPNGETDISSISIFTGIKEFKMNIEALRENLY-FQSKENLSVTLEVILERMEDFTDSAYTSHEHRERILELSTQARMELQQLISVWIQAQSKKTKSIAEELELSILKISHSLNELKKELHSTATQLAADLLKYHADHVVLKALKLTGVEGNLEALAEYACKLSEQKEQLVETCRLLRHISGTEPLEITCIHAEETFQVTGQQIISAAETLTLHPSSKIAKENLDVFCEAWESQISDMSTLLREINDVFEGRRGEKYGYLSLPKPMKNNAN 548 The following BLAST results are available for this feature:
BLAST of TCONS_00069262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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