Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00067106-protein ID=TCONS_00067106-protein|Name=TCONS_00067106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR013087 Znf_C2H2_type
Vocabulary: Molecular Function
Term Definition
GO:0003676 nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
100 200 300 400 500 600 700 Score = Expect = 6.9E-5 / Score = 22.4 Expect = 1.6E-13 / Score = 50.2 Expect = 5.2E-21 / Score = 75.3 Expect = 5.6E-11 / Score = 42.0 Expect = 0.007 / Score = 16.7 Expect = 0.41 / Score = 10.2 Expect = 7.2E-9 / Score = 35.0 Expect = 34.0 / Score = 8.6 Expect = 5.0 / Score = 15.9 Expect = 0.0021 / Score = 27.3 Expect = 63.0 / Score = 6.2 Expect = 0.16 / Score = 21.0 Expect = 0.0054 / Score = 25.9 Expect = 0.026 / Score = 23.7 Expect = 0.023 / Score = 23.9 Expect = 0.061 / Score = 22.4 Score = Score = Score = Score = Score = Score = 8.58 Score = 9.162 Score = 8.58 Score = 9.681 Score = 12.715 Score = 10.803 Score = Score = Score = Sequence Coil G3DSA:3.30.160.60 G3DSA:2.60.260.40 G3DSA:2.40.155.10 G3DSA:2.10.69.10 PF00096 G3DSA:3.30.160.60 SM00355 PS00028 PS00028 PS00028 PS00028 PS00028 PS50157 PS50157 PS50157 PS50157 PS50157 PS50157 SSF57667 SSF57667 SSF57667
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 435..455 None No IPR available GENE3D 3.30.160.60 coord: 213..236 None No IPR available GENE3D 2.60.260.40 coord: 163..212 None No IPR available GENE3D 2.40.155.10 coord: 273..541 None No IPR available GENE3D 2.10.69.10 coord: 237..272 None No IPR available PFAM PF00096 zf-C2H2 coord: 257..279 None No IPR available GENE3D 3.30.160.60 coord: 102..130 IPR013087 Zinc finger C2H2-type SMART SM00355 c2h2final6 coord: 284..309 IPR013087 Zinc finger C2H2-type PROSITE PS00028 ZINC_FINGER_C2H2_1 coord: 104..126 IPR013087 Zinc finger C2H2-type PROSITE PS00028 ZINC_FINGER_C2H2_1 coord: 259..279 IPR013087 Zinc finger C2H2-type PROSITE PS00028 ZINC_FINGER_C2H2_1 coord: 204..224 IPR013087 Zinc finger C2H2-type PROSITE PS00028 ZINC_FINGER_C2H2_1 coord: 144..168 IPR013087 Zinc finger C2H2-type PROSITE PS00028 ZINC_FINGER_C2H2_1 coord: 318..339 IPR013087 Zinc finger C2H2-type PROSITE PS50157 ZINC_FINGER_C2H2_2 coord: 228..256 IPR013087 Zinc finger C2H2-type PROSITE PS50157 ZINC_FINGER_C2H2_2 coord: 284..314 IPR013087 Zinc finger C2H2-type PROSITE PS50157 ZINC_FINGER_C2H2_2 coord: 202..224 IPR013087 Zinc finger C2H2-type PROSITE PS50157 ZINC_FINGER_C2H2_2 coord: 316..344 IPR013087 Zinc finger C2H2-type PROSITE PS50157 ZINC_FINGER_C2H2_2 coord: 142..171 IPR013087 Zinc finger C2H2-type PROSITE PS50157 ZINC_FINGER_C2H2_2 coord: 257..284 IPR013087 Zinc finger C2H2-type SUPERFAMILY 57667 beta-beta-alpha zinc fingers coord: 228..279 IPR013087 Zinc finger C2H2-type SUPERFAMILY 57667 beta-beta-alpha zinc fingers coord: 146..191 IPR013087 Zinc finger C2H2-type SUPERFAMILY 57667 beta-beta-alpha zinc fingers coord: 265..324
Blast
BLAST of TCONS_00067106-protein vs. Swiss-Prot (Human)
Match:
HINFP (Histone H4 transcription factor OS=Homo sapiens GN=HINFP PE=1 SV=2)
HSP 1 Score: 321.627 bits (823), Expect = 3.738e-101
Identity = 161/359 (44.85%), Postives = 227/359 (63.23%), Query Frame = 0
Query: 40 CMWRGCSWEGCGEWTELLRHVMYHGYHVLLKALG-KIVQEKLQLATCRIEMEDPYNMLINATP--LLCQWSGCNTEFFCPNKFYRHVDKHGLETHPLPDEKTDLKFECSWEACNDRFRNKYKLKEHVRVHTHEKLIACPDCGGMFANRTKLKDHLSRQDPEGYENFQCSHCLKRCASERLLRDHMRHHVNYLKCPHCEMTCPNPGSLKYHIGYRHTDIRPFSCAMCEQSFKSHSDLVRHEESHLEK-SYICDVKDCFYSTKTQHCLRRHIRVVH-SSTEKRYICHICNTAYSRGFGLTKHLKKKHNFSWPSGHPRFRYIQYEDGFYRLQMVRFESVELTKRLHGNIEENNGISEPENDG 393
C+W+ C + +L+RHV +H YH LK G + +Q + L C ++ + +I P LC W C F P FYRHV+ H L K + C W+ C F+++ KL+EH+R HT EK++ACP CGGMFAN TK DH+ RQ ++FQCSHC KR A+ERLLRDHMR+HVN+ KCP C+MTCP P SL+ H+ +RH++ RPF C C+ S K+ DL +H ++H E+ +Y CD ++C +S ++ ++ H R VH +E RY CH+C+ ++RG LT HL+KKH F WPSGHPRFRY ++EDG+ RLQ+VR+ESVELT++L +E +G+ N+
Sbjct: 66 CLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQS--RNVIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTFKDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQKHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLGTSLNES 422
The following BLAST results are available for this feature:
