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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067106 ID=TCONS_00067106|Name=TCONS_00067106|organism=Clytia hemisphaerica|type=transcript|length=3333bpRun BLAST on NCBI protein sequence of TCONS_00067106-protein >TCONS_00067106-protein ID=TCONS_00067106-protein|Name=TCONS_00067106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp MKSFVYTTLKAFLDYXADAFVAKMREDADWSEDKAMACCCMWRGCSWEGCRun BLAST on NCBI transcript from alignment at scaffold_463:143214..218049- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067106 ID=TCONS_00067106|Name=TCONS_00067106|organism=Clytia hemisphaerica|type=transcript|length=74836bp|location=Sequence derived from alignment at scaffold_463:143214..218049- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_463:143214..218049- >TCONS_00067106 ID=TCONS_00067106|Name=TCONS_00067106|organism=Clytia hemisphaerica|type=CDS|length=25443bp|location=Sequence derived from alignment at scaffold_463:143214..218049- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067106 vs. Swiss-Prot (Human)
Match: HINFP (Histone H4 transcription factor OS=Homo sapiens GN=HINFP PE=1 SV=2) HSP 1 Score: 318.161 bits (814), Expect = 6.243e-96 Identity = 158/351 (45.01%), Postives = 223/351 (63.53%), Query Frame = 1
Query: 496 CMWRGCSWEGCGEWTELLRHVMYHGYHVLLKALG-KIVQEKLQLATCRIEMEDPYNMLINATPLLCQWSGCNTEFFCPNKFYRHVDKHGLETHPLPDEKTDLKFECSWEACNDRFRNKYKLKEHVRVHTHEKLIACPDCGGMFANRTKLKDHLSRQDPEGYENFQCSHCLKRCASERLLRDHMRHHVNYLKCPHCEMTCPNPGSLKYHIGYRHTDIRPFSCAMCEQSFKSHSDLVRHEESHLEK-SYICDVKDCFYSTKTQHCLRRHIRVVH-SSTEKRYICHICNTAYSRGFGLTKHLKKKHNFSWPSGHPRFRYIQYEDGFYRLQMVRFESVELTKRLHGNIEENNGIS 1539
C+W+ C + +L+RHV +H YH LK G + +Q + L C ++ + + LC W C F P FYRHV+ H L K + C W+ C F+++ KL+EH+R HT EK++ACP CGGMFAN TK DH+ RQ ++FQCSHC KR A+ERLLRDHMR+HVN+ KCP C+MTCP P SL+ H+ +RH++ RPF C C+ S K+ DL +H ++H E+ +Y CD ++C +S ++ ++ H R VH +E RY CH+C+ ++RG LT HL+KKH F WPSGHPRFRY ++EDG+ RLQ+VR+ESVELT++L +E +G+
Sbjct: 66 CLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRNVIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTFKDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQKHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLG 416 The following BLAST results are available for this feature:
BLAST of TCONS_00067106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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