TCONS_00066956-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066956-protein
Unique Name	TCONS_00066956-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	400

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066956-protein ID=TCONS_00066956-protein|Name=TCONS_00066956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MGLVSSVLSKLTKKKITTKERLEKIEEDIENIQNLLKRNREKQRSAVLFL
LVTSISIYLICAAVFYLFYMPKKLVDRLLFLVPFLLFPFLVIGLKKLLHY
VFVTRIAKNSRQLEDLKKEKQKILENVMETETYKVAKEILEKFDPNRKLV
EKDKNEKKTPQPQQANGTELRKRAGQQQQPHPRQMMTPRPMIASTPQMMN
NNGTPFPPRMPQQQFQGTPHFRGPHPGMPRPATPAPILPRDRSIVDKVAE
YFVGDGPSNRYALICKQCAGHNGMALAEEFMFIAYKCCYCGMLNPARKQR
LQAPKLEKPKQTLSRENSMSSLNQTQSSGAEEDEDDKEEGGEDETKQRRS
GIDEEENEESPIHSDDDNNDAQGNDEPVKEHSTSDSETNTKKSENEDMAE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041841	XLOC_041841	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066956	TCONS_00066956	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019273	Lunapark_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..133
None	No IPR available	COILS	Coil	Coil	coord: 8..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..400
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..189
IPR019273	Lunapark domain	PFAM	PF10058	zinc_ribbon_10	coord: 245..294 e-value: 1.1E-17 score: 63.4

Blast

[Close]

BLAST of TCONS_00066956-protein vs. Swiss-Prot (Human)
Match: LNP (Protein lunapark OS=Homo sapiens GN=LNP PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.733e-67
Identity = 119/309 (38.51%), Postives = 173/309 (55.99%), Query Frame = 0

Query:   13 KKKITTKERLEKIEEDIENIQNLLKRNREKQRSAVLFLLVTSISIYLICAAVFYLFYMPKKLVDRLLFLVPFLLFPFLVIGLKKLLHYVFVTRIAKNSRQLEDLKKEKQKILENVMETETYKVAKEILEKFDPNRKLVEKDKNEKKTPQPQQANGTELRKRAGQQQQPHPRQM---MTPRPMIASTPQMMNNNGTPFPP----RMPQQQFQGTP-HFRGPH---PGM----PRPATPAPILPRDRSIVDKVAEYFVGDGPSNRYALICKQCAGHNGMALAEEFMFIAYKCCYCGMLNPARKQRLQAPKL 306
            + K +T E LE I+++I+ ++   ++N+  Q+  V  L++ S  +YL    + YL+Y+P +   RL   +PF  FP ++  ++ ++ + F  R  +N+  L+DLK +++KILE VME ETYK AK ILE+FDP+ K  ++ +            G E+R+R   Q+   P        P P +  +P    ++  P  P      P       P H   P    PGM    P P    PILPR+R  +D++ EY VGDGP NRYALIC+QC  HNGMAL EEF +IA++C YC  LNPARK R QAP+L
Sbjct:    9 RTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLIVYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRL 317

The following BLAST results are available for this feature:

BLAST of TCONS_00066956-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066956-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
LNP	1.733e-67	38.51	Protein lunapark OS=Homo sapiens GN=LNP PE=1 SV=2	[more]

You are here

TCONS_00066956-protein (polypeptide) - C. hemisphaerica

ZOOM

x 1

POSITION

0

ZOOM

x 1

POSITION

0