|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066956 ID=TCONS_00066956|Name=TCONS_00066956|organism=Clytia hemisphaerica|type=transcript|length=3102bpRun BLAST on NCBI protein sequence of TCONS_00066956-protein >TCONS_00066956-protein ID=TCONS_00066956-protein|Name=TCONS_00066956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp MGLVSSVLSKLTKKKITTKERLEKIEEDIENIQNLLKRNREKQRSAVLFLRun BLAST on NCBI transcript from alignment at scaffold_462:124700..144989- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066956 ID=TCONS_00066956|Name=TCONS_00066956|organism=Clytia hemisphaerica|type=transcript|length=20290bp|location=Sequence derived from alignment at scaffold_462:124700..144989- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:124700..144989- >TCONS_00066956 ID=TCONS_00066956|Name=TCONS_00066956|organism=Clytia hemisphaerica|type=CDS|length=14436bp|location=Sequence derived from alignment at scaffold_462:124700..144989- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066956 vs. Swiss-Prot (Human)
Match: LNP (Protein lunapark OS=Homo sapiens GN=LNP PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 1.914e-51 Identity = 113/303 (37.29%), Postives = 166/303 (54.79%), Query Frame = 2
Query: 233 DIENIQNLLKRNREKQRSAVLFLLVTSISIYLICAAVFYLFYMPKKLVDRXXXXXXXXXXXXXXIGLKKLLHYVFVTRIAKNSRQLEDLKKEKQKILENVMETETYKVAKEILEKFDPNRKLVEKDKNEKKTPQPQQANGTELRKRAGQQ-----------QQPHPRQMMTPRPMIAS-----------TPQMMNNNGTXXXXXXXXXXXXGTPHFRGPHPGM--PRPATPAPILPRDRSIVDKVAEYFVGDGPSNRYALICKQCAGHNGMALAEEFMFIAYKCCYCGMLNPARKQRLQAPKL 1069
+I+ ++ ++N+ Q+ V L++ S +YL + YL+Y+P + RL +PF FP ++ ++ ++ + F R +N+ L+DLK +++KILE VME ETYK AK ILE+FDP+ K ++ + G E+R+R Q Q P P+ ++P P S TP + +N + G+P P G+ P P PILPR+R +D++ EY VGDGP NRYALIC+QC HNGMAL EEF +IA++C YC LNPARK R QAP+L
Sbjct: 24 EIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLIVYLWYLPDEFTARLAMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSN---------VLPRHLGSPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRL 317 The following BLAST results are available for this feature:
BLAST of TCONS_00066956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.