TCONS_00066879-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066879-protein
Unique Name	TCONS_00066879-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	182

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066879-protein ID=TCONS_00066879-protein|Name=TCONS_00066879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MTSIIRFTPLSGAQDEKPLCYLLQVDEFRFLLDCGWDENLDLEVVENIRK
HLHSIDAVLLSHPDIYHVGALPYLVGKCGLNCPIYATIPVHKMGQMFVYD
FYQSHHNYKNFEHYTLDDVDAAFDKIEQLKYSQHVSLKGRGHGLSITPYL
AGHMIGGTMWKIKQEGEEDIIYAVDFNHKKEM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041821	XLOC_041821	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066879	TCONS_00066879	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001279	Metallo-B-lactamas

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	GENE3D	3.60.15.10		coord: 2..182 e-value: 1.6E-30 score: 105.4
IPR001279	Metallo-beta-lactamase	PFAM	PF16661	Lactamase_B_6	coord: 22..181 e-value: 2.3E-61 score: 206.5
IPR001279	Metallo-beta-lactamase	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 4..181

Blast

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BLAST of TCONS_00066879-protein vs. Swiss-Prot (Human)
Match: CPSF2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.706e-95
Identity = 132/182 (72.53%), Postives = 160/182 (87.91%), Query Frame = 0

Query:    1 MTSIIRFTPLSGAQDEKPLCYLLQVDEFRFLLDCGWDENLDLEVVENIRKHLHSIDAVLLSHPDIYHVGALPYLVGKCGLNCPIYATIPVHKMGQMFVYDFYQSHHNYKNFEHYTLDDVDAAFDKIEQLKYSQHVSLKGRGHGLSITPYLAGHMIGGTMWKIKQEGEEDIIYAVDFNHKKEM 182
            MTSII+ T LSG Q+E  LCYLLQVDEFRFLLDCGWDE+  +++++++RKH+H IDAVLLSHPD  H+GALPY VGK GLNC IYATIPV+KMGQMF+YD YQS HN ++F  +TLDDVDAAFDKI+QLK+SQ V+LKG+GHGLSITP  AGHMIGGT+WKI ++GEE+I+YAVDFNHK+E+
Sbjct:    1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182

The following BLAST results are available for this feature:

BLAST of TCONS_00066879-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066879-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
CPSF2	1.706e-95	72.53	Cleavage and polyadenylation specificity factor su...	[more]

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TCONS_00066879-protein (polypeptide) - C. hemisphaerica

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