|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066879 ID=TCONS_00066879|Name=TCONS_00066879|organism=Clytia hemisphaerica|type=transcript|length=723bp
TAATAAAGTGGTACAGCAAGATCTGTTCtttacatttatttttattttgg
taaATTATGTGATATATAAAATTAGACTTTTCAAACGTACTGAcaatttc
tttaactttttgtgTTACAGGTAAACAATAAACAATTACAGGTAAACAAT
GCTTTAAATTATTGGAATAATATAAAAATGACTTCCATTATTCGATTCAC
ACCTTTGTCAGGTGCACAAGATGAGAAACCATTGTGTTATCTCCTTCAAG
TGGATGAATTCAGGTTTCTACTTGATTGTGGATGGGATGAAAATTTAGAC
TTGGAAGTGGTTGAAAATATACGAAAGCATTTGCATTCCATAGACGCTGT
TTTATTATCACATCCAGACATATACCATGTTGGTGCACTACCTTATCTTG
TTGGAAAATGTGGTCTGAATTGTCCTATTTATGCTACTATACCAGTTCAT
AAGATGGGTCAAATGTTTGTCTACGATTTTTACCAGTCTCATCATAATTA
CAAAAACTTTGAACATTATACTCTTGATGACGTCGACGCAGCTTTTGACA
AAATTGAGCAATTGAAATACTCACAACACGTCAGTTTGAAAGGGCGTGGT
CACGGGTTAAGCATCACCCCTTACCTTGCGGGACACATGATTGGTGGAAC
AATGTGGAAGATCAAGCAAGAAGGGGAAGAAGATATTATTTATGCTGTCG
ATTtcaatcataaaaaagaaatg Run BLAST on NCBI protein sequence of TCONS_00066879-protein >TCONS_00066879-protein ID=TCONS_00066879-protein|Name=TCONS_00066879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MTSIIRFTPLSGAQDEKPLCYLLQVDEFRFLLDCGWDENLDLEVVENIRK
HLHSIDAVLLSHPDIYHVGALPYLVGKCGLNCPIYATIPVHKMGQMFVYD
FYQSHHNYKNFEHYTLDDVDAAFDKIEQLKYSQHVSLKGRGHGLSITPYL
AGHMIGGTMWKIKQEGEEDIIYAVDFNHKKEM Run BLAST on NCBI transcript from alignment at scaffold_462:506839..511849+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066879 ID=TCONS_00066879|Name=TCONS_00066879|organism=Clytia hemisphaerica|type=transcript|length=5011bp|location=Sequence derived from alignment at scaffold_462:506839..511849+ (Clytia hemisphaerica)
TAATAAAGTGGTACAGCAAGATCTGTTCtttacatttatttttattttgg
taaATTATGTGATATATAAAATTAGACTTTTCAAACGTACTGAcaatttc
tttaactttttgtgTTACAGGTAAACAATAAACAATTACAGGTAAACAAT
GCTTTAAATTATTGGAATAATATAAAAATGACTTCCATTATTCGATTCAC
ACCTTTGTCAGGTGCACAAGATGAGAAACCATTGTGTTATCTCCTTCAAG
TGGATGAATTCAGGTTTCTACTTGATTGTGGATGGGATGAAAATTTAGAC
TTGGAAGTGGTTGAAAATATACGAAAGTGAGTATGAATCAACTTTGTTAT
GCTTTgttatgtttaatttttttcagtaaGGCGacaccaatttaatttgt
tgttctacgggcccaaCCGACcttattttgctaaaatcaaaaaaataata
atgaatttccactaaaatatatttcacacactagttatttgtaagaatta
aatttgaataaatctgaaaattaattcaagaaaatttagaaaatgaagca
agcattccatacactaaaattttattatgatcttcatcgaagataaaaaa
gtgaacttttgaatattttcagtaccttaccaaccctgataaataaaaaa
tttattcttactttaccgaccgaccgacccatatttttctaacgatctgc
ccgtagaaaacaaattaaattggtctcgcctaacttAACTTCGTCCGATT
TCTATCCgtataaaattgtatttttatttctgataaaaatgttaattcga
aattcaaatttttaccgTTTTTAAAATACTCCTGGCACGAATGTTATTTA
ACTTAGCCCGTAACGTAATCataagtttaaaaaattcaattttaatttga
tttcaGGCATTTGCATTCCATAGACGCTGTTTTATTATCACATCCAGACA
TATACCATGTTGGTGCACTACCTTATCTTGTTGGAAAATGTGGTCTGAAT
TGTCCTATTTATGCTACTATACCAGTTCATAAGATGGGTCAAATGTTTGT
CTACGATTTTTACCAGGTATTGTGAAGCTTTATTTAGCTCTttatacttt
tttgtaattttgttcgGGTACAGACAGATTTGAATTGTTTAGCTGTACTT
TTGTTAAGTATAGATTACTGTAGTCCCTTTTtactggaaaaaaaatcttt
tgatccaCCACCCTGTGTTGACTAACTTCTTCCCTTGTCATTTATTTTTG
TGGGGAAACAGTCTTTTAAGGCAAGATAGGGGTCTGTACGTTAATCAAAT
AGTTTCATTTTTCTATTATACTTGCTTCACTTCAGTCTCATCATAATTAC
AAAAACTTTGAACATTATACTCTTGATGACGTCGACGCAGCTTTTGACAA
AATTGAGCAATTGAAATACTCACAACACGTCAGTTTGAAAGGTATGATTA
TGACCaccttataattttttttttttcatacttCAAGCCCGTTTTCTAAA
TGACAACTTTGAGCAATCCCAAATAGTGAACAGTCAATGGCAACAGAGAC
ACTCTacggaaaagaattttgaaattttgaaatattgggTCTGTTTACAG
ACAAAGTTTTTTTGGCAACTTCATTTTGTATAATGAAATTAATTTAGTGA
GTTttgagaaagaaacaaaagtctgacaaataaaattttctttgaacttT
TGCTCAagctaaataaaaaatcttatgAAATAGCTATTATTCGTTGGGtc
aaaaaccatttttgagatccTAGTGTGATTGGACTGCTTCTGGAGGTGCT
ATCAAACGGTGTAAAGGTCTTGACGCTCTTAGGTGCCTACACTGTGTTTC
CTGTGCACTGTGTAGGGTCGTAACCATAGTCTTATGGGGAAAGCTTCATC
TAGCAAGGGTAAGGGATTCAACTGAATAATTATTATTCTAGGGGTTACAC
TAAAAGAGTAAATCAGTTTTATTAACTATTTGCATGTTTTACATCTAAAT
ATATTTATATAGTTTAAAGAATTCAACCTGTTTTTTTTGAGACAGTAGAG
CATGTTTAAAACAAAGCTGGAAAATTCAGGAACAGTTTTGAAGTAGATGA
AAACTTTACCAATGCTGtttaaataaatcaatcctcTAGAAAACACCTCA
ATAATGAACAGGATTTGATAGGCTGATGATTAGACTGGGAGCTTAGCTAT
GTTCAATGCAATGGGAAATGCGATGTACAAGACTTTCCCCAAAACAATTG
ACACCGTAAATAAACCGATAAGGAGTTTTAACGTCGCCAAAGCTTTCTGG
TTTCGTTCTTTAGCTCTCCAGTGAGGTGCATTTGCAAGCGCCTTTGAAAT
TCTATAGTAAAACAAGCCAGTCAAGGTGAAGGATAGAACAACAGTAATGG
CCGTTGAAAAGTCAGAAATTATGAAATGGACAAGTTGGTGATCTTGGTTA
AACATTGGTAAAATAATATGTCCATGGAAAGAATAAATGATGCCACAGAA
ATGCCAAATAAAATGTTGCTTCTTCCATTTAGCTTTTACCAAAGGTTGCA
CTTTACGTGTCTATTTTCCGACTCTTTGTTTTACTTTGAGCATGTTCTTT
CTCACCGTGATAATGATTCACTAACCTTTTCTCTAAGTTCCAGTTGACGG
CCTTCACAATAAGACTCTTTTTTGCTATCTTAAATTAattcaaatttgat
taaaaatttggtttttatttacCTAATTACAATCGAATGAATATCGTTAG
ATTTGACGTCAAAGTATGATATATTAATAGATATTAATAGAAAATTAATT
ACtagaaatacaataaaaagcgATATGTTTTCCTTTTGAACGGTTTTTAA
gaggaaattttccaataaGAACTGCATGTGGTATAAAGGAAAataattgt
ttatttttcatcgATCAATATCAAGATGATATTTggatatcttcaaaaaa
atatcgagaaaaaaaggtgaagaaaagaacaaagaatCTGTTGTTGAGTC
GCGGAATTTCATCAGACTTTCCATgtcaaaatttattattttgttctgaa
aaagaatttgttgaaagaattttgttttcAGTTTGCTTGACTCAACTTGA
CTCAGAATCAACCAAACAGAATTTCTATCAAATACAAAAAAGTTGGTATT
CTCTCATATCAAGCCATTAGTTATAGAGGAACATACTTATCAACGAATAA
AGAATTAAACGtctaaaaagctaaaaatggtATTCAAGGTACCCAATAAC
ACATTGAGAGACATTCTACAGAGCAGAAATGACGCACTGGATGTAGTTAT
CGTTCAGATGCATAAAGTCATCAGAGTTCTTGAAGTTTGCGTAGCGTTTG
TTGGTCTTGTCGGCAATTTGATCATTCTTTACTTCTTTATTCAAACGAAT
CGAAGAAAAATGAGAAGAATGACTTCCTACCATTTCCTATTGATTCAATT
GGCAATCATCGATTTTGTGATTTGTATCGGAGTTATTGGATCCTCCCGCT
ATTTATCTGATAGCTTTGGTGAAGTGTACAGTTCAGTGGTTATCAGCCTA
TTGAAGGTCTTCTCATTAGATTCCAACTTGGTATTGATCATAATCTCGTT
CTTGAGATTTCTGACTTCCTTGGCTATATTTATACCGTTGTTTAATAATA
ATCACCAAGCTGACCAATTCACAGCTTTCGACTTGTCTACTGTAATTGTG
ACCATATTTTCCCTCACCTTGACTTGCTTGTTTTACtatagaatttcaaa
agcccTTGCAAACGCACCTCACAGCAGAGCTAAAGAACGAAATCAGAAAG
CTTTGGCGACGTTGAAACTCCTTATTGGTTTATTTATGGTGTCAATTGTT
TTAGGGAAAGTTCTGTACATTGCTTTCTCGATTGCATTAGACAGAACAAA
TTTCACAGTCGATGCTATCGGCTATAAAACTCTTTCAATGCTGGAGAACT
TTTCTAgaggattgatttatttgaaCAGCGTTGGTAACGTTTTTATCTAC
CTCAAAACTGTTCCTGGATTTTCTCGATTCATTTTGAACAGATTCTTTTG
CCGTaaagaaaaacaatgaaaagtcagaagaaataaaaaaggatgtcaaa
cttcttttttttttgtaactAATGGAAATAATTATATTTATGTCTTACTC
TATGTGTCATTGTGTGAACTTAACTTTATGAATCACTTTGCCCCGTCCCT
CTCTTCTACTTCCTCCTTTCCTTCCCTCTTTTCTCCTCTCCTTTCTCCTC
TATTTCAGTGTTTTgcttaccttattggaactaatttttgcgggaactaa
ttttcgcggtcgaaaaaaatatccgaaaaattgcatttcgcgggttttaa
ttttcgcaattttgcatttttttggacaaatttttttcattttcctgggg
atttttcaaatttttcgataaaattggaaaaaattgtgtttcgcgggaat
taattttcgcggtttttaacTCCCAAAATTATTCGCGAGTTCAaattttt
cgcgattttgacgaaaaaccgcgaaaaacgctaaaattaattcctgcgaa
aattagttccaataaggtaaatCAAGGCTTGGAGTGAAAGACACAGGTTA
GATTCCCTCTCCACCCCTGCGGTGCAAATAACCAAAACAATCATGTTCTC
TTTTAGAGTTTGAGCATTTCTCCTTATCATGCGGGGTATATGATAACAGA
AACAACCATTTTCTCTTTCTAAGGGAGTGGTTATGGGTTAAAAACACAAC
CCTTTACCTAGCACGTTACATTTCTTACCTAATGCAGCaaataaactaaa
aatcaatGTTCTCTTGTCGGTTGTGTTGACGGGGTTGACTTGCAGACTAA
TATTAAATCTCAGTCACGGTTTCTTTTTAGGGCGTGGTCACGGGTTAAGC
ATCACCCCTTACCTTGCGGGACACATGATTGGTGGAACAATGTGGAAGAT
CAAGCAAGAAGGGGAAGAAGATATTATTTATGCTGTCGATTtcaatcata
aaaaagaaatg Coding sequence (CDS) from alignment at scaffold_462:506839..511849+ >TCONS_00066879 ID=TCONS_00066879|Name=TCONS_00066879|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_462:506839..511849+ (Clytia hemisphaerica)
ATGACTTCCATTATTCGATTCACACCTTTGTCAGGTGCACAAGATGAGAA
ACCATTGTGTTATCTCCTTCAAGTGGATGAATTCAGGTTTCTACTTGATT
GTGGATGGGATGAAAATTTAGACTTGGAAGTGGTTGAAAATATACGAAAG
CATTTGCATTCCATAGACGCTGTTTTATTATCACATCCAGACATATACCA
TGTTGGTGCACTACCTTATCTTGTTGGAAAATGTGGTCTGAATTGTCCTA
TTTATGCTACTATACCAGTTCATAAGATGGGTCAAATGTTTGTCTACGAT
TTTTACCAGTCTCATCATAATTACAAAAACTTTGAACATTATACTCTTGA
TGACGTCGACGCAGCTTTTGACAAAATTGAGCAATTGAAATACTCACAAC
ACGTCAGTTTGAAAGGGCGTGGTCACGGGTTAAGCATCACCCCTTACCTT
GCGGGACACATGATTGGTGGAACAATGTGGAAGATCAAGCAAGAAGGGGA
AGAAGATATTATTTATGCTGTCGATTtcaatcataaaaaagaaatgATGA
CTTCCATTATTCGATTCACACCTTTGTCAGGTGCACAAGATGAGAAACCA
TTGTGTTATCTCCTTCAAGTGGATGAATTCAGGTTTCTACTTGATTGTGG
ATGGGATGAAAATTTAGACTTGGAAGTGGTTGAAAATATACGAAAGCATT
TGCATTCCATAGACGCTGTTTTATTATCACATCCAGACATATACCATGTT
GGTGCACTACCTTATCTTGTTGGAAAATGTGGTCTGAATTGTCCTATTTA
TGCTACTATACCAGTTCATAAGATGGGTCAAATGTTTGTCTACGATTTTT
ACCAGTCTCATCATAATTACAAAAACTTTGAACATTATACTCTTGATGAC
GTCGACGCAGCTTTTGACAAAATTGAGCAATTGAAATACTCACAACACGT
CAGTTTGAAAGGGCGTGGTCACGGGTTAAGCATCACCCCTTACCTTGCGG
GACACATGATTGGTGGAACAATGTGGAAGATCAAGCAAGAAGGGGAAGAA
GATATTATTTATGCTGTCGATTtcaatcataaaaaagaaatgATGACTTC
CATTATTCGATTCACACCTTTGTCAGGTGCACAAGATGAGAAACCATTGT
GTTATCTCCTTCAAGTGGATGAATTCAGGTTTCTACTTGATTGTGGATGG
GATGAAAATTTAGACTTGGAAGTGGTTGAAAATATACGAAAGCATTTGCA
TTCCATAGACGCTGTTTTATTATCACATCCAGACATATACCATGTTGGTG
CACTACCTTATCTTGTTGGAAAATGTGGTCTGAATTGTCCTATTTATGCT
ACTATACCAGTTCATAAGATGGGTCAAATGTTTGTCTACGATTTTTACCA
GTCTCATCATAATTACAAAAACTTTGAACATTATACTCTTGATGACGTCG
ACGCAGCTTTTGACAAAATTGAGCAATTGAAATACTCACAACACGTCAGT
TTGAAAGGGCGTGGTCACGGGTTAAGCATCACCCCTTACCTTGCGGGACA
CATGATTGGTGGAACAATGTGGAAGATCAAGCAAGAAGGGGAAGAAGATA
TTATTTATGCTGTCGATTtcaatcataaaaaagaaatgATGACTTCCATT
ATTCGATTCACACCTTTGTCAGGTGCACAAGATGAGAAACCATTGTGTTA
TCTCCTTCAAGTGGATGAATTCAGGTTTCTACTTGATTGTGGATGGGATG
AAAATTTAGACTTGGAAGTGGTTGAAAATATACGAAAGCATTTGCATTCC
ATAGACGCTGTTTTATTATCACATCCAGACATATACCATGTTGGTGCACT
ACCTTATCTTGTTGGAAAATGTGGTCTGAATTGTCCTATTTATGCTACTA
TACCAGTTCATAAGATGGGTCAAATGTTTGTCTACGATTTTTACCAGTCT
CATCATAATTACAAAAACTTTGAACATTATACTCTTGATGACGTCGACGC
AGCTTTTGACAAAATTGAGCAATTGAAATACTCACAACACGTCAGTTTGA
AAGGGCGTGGTCACGGGTTAAGCATCACCCCTTACCTTGCGGGACACATG
ATTGGTGGAACAATGTGGAAGATCAAGCAAGAAGGGGAAGAAGATATTAT
TTATGCTGTCGATTtcaatcataaaaaagaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066879-exon-scaffold_462-1491911889:506839..507164 | TCONS_00066879-exon-scaffold_462-1491911889:506839..507164 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1510915933:506839..507164 | TCONS_00066879-exon-scaffold_462-1510915933:506839..507164 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1575043694:506839..507164 | TCONS_00066879-exon-scaffold_462-1575043694:506839..507164 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1491911889:507745..507904 | TCONS_00066879-exon-scaffold_462-1491911889:507745..507904 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1510915933:507745..507904 | TCONS_00066879-exon-scaffold_462-1510915933:507745..507904 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1575043694:507745..507904 | TCONS_00066879-exon-scaffold_462-1575043694:507745..507904 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1491911889:508174..508279 | TCONS_00066879-exon-scaffold_462-1491911889:508174..508279 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1510915933:508174..508279 | TCONS_00066879-exon-scaffold_462-1510915933:508174..508279 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1575043694:508174..508279 | TCONS_00066879-exon-scaffold_462-1575043694:508174..508279 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1491911889:511719..511849 | TCONS_00066879-exon-scaffold_462-1491911889:511719..511849 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1510915933:511719..511849 | TCONS_00066879-exon-scaffold_462-1510915933:511719..511849 | Clytia hemisphaerica | exon |
| TCONS_00066879-exon-scaffold_462-1575043694:511719..511849 | TCONS_00066879-exon-scaffold_462-1575043694:511719..511849 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:506839..511849 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001279 | Metallo-B-lactamas |
Blast
BLAST of TCONS_00066879 vs. Swiss-Prot (Human)
Match: CPSF2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2) HSP 1 Score: 293.123 bits (749), Expect = 4.779e-93 Identity = 132/182 (72.53%), Postives = 160/182 (87.91%), Query Frame = 1
Query: 178 MTSIIRFTPLSGAQDEKPLCYLLQVDEFRFLLDCGWDENLDLEVVENIRKHLHSIDAVLLSHPDIYHVGALPYLVGKCGLNCPIYATIPVHKMGQMFVYDFYQSHHNYKNFEHYTLDDVDAAFDKIEQLKYSQHVSLKGRGHGLSITPYLAGHMIGGTMWKIKQEGEEDIIYAVDFNHKKEM 723
MTSII+ T LSG Q+E LCYLLQVDEFRFLLDCGWDE+ +++++++RKH+H IDAVLLSHPD H+GALPY VGK GLNC IYATIPV+KMGQMF+YD YQS HN ++F +TLDDVDAAFDKI+QLK+SQ V+LKG+GHGLSITP AGHMIGGT+WKI ++GEE+I+YAVDFNHK+E+
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
The following BLAST results are available for this feature:
|
